RNA–Protein interactions for RNA: ENST00000568539.1

SF3B3-212, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-212ENST00000568539 CCDC102BQ68D86 513 aa10.36□□□□□ -0.75
SF3B3-212ENST00000568539 FBXO33Q7Z6M2 555 aa10.36□□□□□ -0.75
SF3B3-212ENST00000568539 FAM84BQ96KN1 310 aaPredicted RBP10.36□□□□□ -0.75
SF3B3-212ENST00000568539 ZC3H12CQ9C0D7 883 aaKnown RBP10.36□□□□□ -0.75
SF3B3-212ENST00000568539 VPS33BQ9H267 617 aa10.36□□□□□ -0.75
SF3B3-212ENST00000568539 TAOK3Q9H2K8 898 aa10.36□□□□□ -0.75
SF3B3-212ENST00000568539 STAP2Q9UGK3 403 aa10.36□□□□□ -0.75
SF3B3-212ENST00000568539 A0A1B0GUL6 1792 aa10.35□□□□□ -0.75
SF3B3-212ENST00000568539 RIMBP2O15034 1052 aa10.35□□□□□ -0.75
SF3B3-212ENST00000568539 HIBADHP31937 336 aaKnown RBP10.35□□□□□ -0.75
SF3B3-212ENST00000568539 PHKA1P46020 1223 aa10.35□□□□□ -0.75
SF3B3-212ENST00000568539 BCAMP50895 628 aa10.35□□□□□ -0.75
SF3B3-212ENST00000568539 PDE1AP54750 535 aa10.35□□□□□ -0.75
SF3B3-212ENST00000568539 RASSF7Q02833 373 aa10.35□□□□□ -0.75
SF3B3-212ENST00000568539 AOC3Q16853 763 aa10.35□□□□□ -0.75
SF3B3-212ENST00000568539 GORABQ5T7V8 394 aa10.35□□□□□ -0.75
SF3B3-212ENST00000568539 ARHGAP27Q6ZUM4 889 aa10.35□□□□□ -0.75
SF3B3-212ENST00000568539 PLEKHM2Q8IWE5 1019 aa10.35□□□□□ -0.75
SF3B3-212ENST00000568539 ZNF512BQ96KM6 892 aaPredicted RBP10.35□□□□□ -0.75
SF3B3-212ENST00000568539 ZNF277Q9NRM2 450 aaPredicted RBP10.35□□□□□ -0.75
SF3B3-212ENST00000568539 ECHDC1Q9NTX5 307 aa10.35□□□□□ -0.75
SF3B3-212ENST00000568539 PCNTO95613 3336 aa10.35□□□□□ -0.75
SF3B3-212ENST00000568539 TTC41PQ6P2S7 1318 aa10.34□□□□□ -0.75
SF3B3-212ENST00000568539 PPIP5K2O43314 1243 aa10.34□□□□□ -0.75
SF3B3-212ENST00000568539 HSPA6P17066 643 aa10.34□□□□□ -0.75
SF3B3-212ENST00000568539 ATP5JP18859 108 aa10.34□□□□□ -0.75
SF3B3-212ENST00000568539 ARID4AP29374 1257 aaPredicted RBP10.34□□□□□ -0.75
SF3B3-212ENST00000568539 IARSP41252 1262 aaKnown RBP10.34□□□□□ -0.75
SF3B3-212ENST00000568539 PRELPP51888 382 aa10.34□□□□□ -0.75
SF3B3-212ENST00000568539 CCDC158Q5M9N0 1113 aa10.34□□□□□ -0.75
SF3B3-212ENST00000568539 TSHZ3Q63HK5 1081 aa10.34□□□□□ -0.75
SF3B3-212ENST00000568539 ZNF804AQ7Z570 1209 aa10.34□□□□□ -0.75
SF3B3-212ENST00000568539 PI4K2BQ8TCG2 481 aa10.34□□□□□ -0.75
SF3B3-212ENST00000568539 ZNF526Q8TF50 670 aaPredicted RBP10.34□□□□□ -0.75
SF3B3-212ENST00000568539 GPATCH3Q96I76 525 aa10.34□□□□□ -0.75
SF3B3-212ENST00000568539 COA1Q9GZY4 146 aa10.34□□□□□ -0.75
SF3B3-212ENST00000568539 OSBPL3Q9H4L5 887 aa10.34□□□□□ -0.75
SF3B3-212ENST00000568539 CD209Q9NNX6 404 aa10.34□□□□□ -0.75
SF3B3-212ENST00000568539 AOX1Q06278 1338 aa10.33□□□□□ -0.76
SF3B3-212ENST00000568539 UQCRFS1P1P0C7P4 283 aa10.33□□□□□ -0.76
SF3B3-212ENST00000568539 IL1R1P14778 569 aa10.33□□□□□ -0.76
SF3B3-212ENST00000568539 SCARF1Q14162 830 aa10.33□□□□□ -0.76
SF3B3-212ENST00000568539 DOK7Q18PE1 504 aa10.33□□□□□ -0.76
SF3B3-212ENST00000568539 TTC39AQ5SRH9 613 aa10.33□□□□□ -0.76
SF3B3-212ENST00000568539 VPS37DQ86XT2 251 aa10.33□□□□□ -0.76
SF3B3-212ENST00000568539 TDRD7Q8NHU6 1098 aaKnown RBP10.33□□□□□ -0.76
SF3B3-212ENST00000568539 PPIL4Q8WUA2 492 aaKnown RBP eCLIP10.33□□□□□ -0.76
SF3B3-212ENST00000568539 GNL3LQ9NVN8 582 aaKnown RBP10.33□□□□□ -0.76
SF3B3-212ENST00000568539 ARAP2Q8WZ64 1704 aa10.33□□□□□ -0.76
SF3B3-212ENST00000568539 COL4A5P29400 1685 aa10.32□□□□□ -0.76
SF3B3-212ENST00000568539 SEMA3EO15041 775 aa10.32□□□□□ -0.76
SF3B3-212ENST00000568539 GRIN3BO60391 1043 aa10.32□□□□□ -0.76
SF3B3-212ENST00000568539 GLRX3O76003 335 aaKnown RBP10.32□□□□□ -0.76
SF3B3-212ENST00000568539 MCAMP43121 646 aa10.32□□□□□ -0.76
SF3B3-212ENST00000568539 RASGRF1Q13972 1273 aa10.32□□□□□ -0.76
SF3B3-212ENST00000568539 PODNQ7Z5L7 613 aa10.32□□□□□ -0.76
SF3B3-212ENST00000568539 LARGE2Q8N3Y3 721 aa10.32□□□□□ -0.76
SF3B3-212ENST00000568539 DBNDD1Q9H9R9 158 aa10.32□□□□□ -0.76
SF3B3-212ENST00000568539 HMG20BQ9P0W2 317 aa10.32□□□□□ -0.76
SF3B3-212ENST00000568539 IQSEC3Q9UPP2 1182 aaPredicted RBP10.32□□□□□ -0.76
SF3B3-212ENST00000568539 CACNA1SQ13698 1873 aa10.32□□□□□ -0.76
SF3B3-212ENST00000568539 PDS5AQ29RF7 1337 aaKnown RBP10.32□□□□□ -0.76
SF3B3-212ENST00000568539 COL1A1P02452 1464 aaPredicted RBP10.31□□□□□ -0.76
SF3B3-212ENST00000568539 ARFGEF1Q9Y6D6 1849 aa10.31□□□□□ -0.76
SF3B3-212ENST00000568539 G3V3G9 751 aa10.31□□□□□ -0.76
SF3B3-212ENST00000568539 ERC2O15083 957 aa10.31□□□□□ -0.76
SF3B3-212ENST00000568539 ECE2O60344 883 aa10.31□□□□□ -0.76
SF3B3-212ENST00000568539 PRKAR2AP13861 404 aaKnown RBP10.31□□□□□ -0.76
SF3B3-212ENST00000568539 LMNB1P20700 586 aa10.31□□□□□ -0.76
SF3B3-212ENST00000568539 RGS3P49796 1198 aa10.31□□□□□ -0.76
SF3B3-212ENST00000568539 PI16Q6UXB8 463 aa10.31□□□□□ -0.76
SF3B3-212ENST00000568539 NIM1KQ8IY84 436 aa10.31□□□□□ -0.76
SF3B3-212ENST00000568539 SPATA5Q8NB90 893 aa10.31□□□□□ -0.76
SF3B3-212ENST00000568539 HAUS7Q99871 368 aa10.31□□□□□ -0.76
SF3B3-212ENST00000568539 BOLA2Q9H3K6 86 aa10.31□□□□□ -0.76
SF3B3-212ENST00000568539 DENND2AQ9ULE3 1009 aa10.31□□□□□ -0.76
SF3B3-212ENST00000568539 YDJCA8MPS7 323 aa10.3□□□□□ -0.76
SF3B3-212ENST00000568539 FRAT2O75474 233 aaPredicted RBP10.3□□□□□ -0.76
SF3B3-212ENST00000568539 GSPT1P15170 499 aaKnown RBP10.3□□□□□ -0.76
SF3B3-212ENST00000568539 ZAP70P43403 619 aa10.3□□□□□ -0.76
SF3B3-212ENST00000568539 TTC22Q5TAA0 569 aa10.3□□□□□ -0.76
SF3B3-212ENST00000568539 COL13A1Q5TAT6 717 aaPredicted RBP10.3□□□□□ -0.76
SF3B3-212ENST00000568539 ZNF467Q7Z7K2 595 aaPredicted RBP10.3□□□□□ -0.76
SF3B3-212ENST00000568539 JDP2Q8WYK2 163 aa10.3□□□□□ -0.76
SF3B3-212ENST00000568539 SNRKQ9NRH2 765 aa10.3□□□□□ -0.76
SF3B3-212ENST00000568539 ZNRF3Q9ULT6 936 aa10.3□□□□□ -0.76
SF3B3-212ENST00000568539 NDUFB9Q9Y6M9 179 aa10.3□□□□□ -0.76
SF3B3-212ENST00000568539 FAM205AQ6ZU69 1335 aa10.3□□□□□ -0.76
SF3B3-212ENST00000568539 CYP2E1P05181 493 aaPredicted RBP10.29□□□□□ -0.76
SF3B3-212ENST00000568539 DNAJC2Q99543 621 aaKnown RBP10.29□□□□□ -0.76
SF3B3-212ENST00000568539 TSPYL2Q9H2G4 693 aaPredicted RBP10.29□□□□□ -0.76
SF3B3-212ENST00000568539 KCNQ5Q9NR82 932 aa10.29□□□□□ -0.76
SF3B3-212ENST00000568539 STK24Q9Y6E0 443 aa10.29□□□□□ -0.76
SF3B3-212ENST00000568539 FER1L6Q2WGJ9 1857 aa10.29□□□□□ -0.76
SF3B3-212ENST00000568539 USP17L3A6NCW0 530 aa10.28□□□□□ -0.76
SF3B3-212ENST00000568539 USP17L4A6NCW7 530 aa10.28□□□□□ -0.76
SF3B3-212ENST00000568539 FZD9O00144 591 aa10.28□□□□□ -0.76
SF3B3-212ENST00000568539 GOLIM4O00461 696 aa10.28□□□□□ -0.76
SF3B3-212ENST00000568539 MAP4K4O95819 1239 aaPredicted RBP10.28□□□□□ -0.76
SF3B3-212ENST00000568539 GTF2IP78347 998 aa10.28□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms