RNA–Protein interactions for RNA: ENST00000568029.5

VPS39-209, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 5

Gene VPS39, Length 791 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-209ENST00000568029 KLK14Q9P0G3 267 aa8.18□□□□□ -1.1
VPS39-209ENST00000568029 DCTN4Q9UJW0 460 aa8.18□□□□□ -1.1
VPS39-209ENST00000568029 MARSP56192 900 aaKnown RBP8.17□□□□□ -1.1
VPS39-209ENST00000568029 PTSQ03393 145 aa8.17□□□□□ -1.1
VPS39-209ENST00000568029 BICDL1Q6ZP65 573 aa8.17□□□□□ -1.1
VPS39-209ENST00000568029 PGBD3Q8N328 593 aa8.17□□□□□ -1.1
VPS39-209ENST00000568029 DMGDHQ9UI17 866 aaKnown RBP8.17□□□□□ -1.1
VPS39-209ENST00000568029 BCS1LQ9Y276 419 aa8.17□□□□□ -1.1
VPS39-209ENST00000568029 DISP2A7MBM2 1401 aa8.17□□□□□ -1.1
VPS39-209ENST00000568029 RGPD8O14715 1765 aaPredicted RBP8.17□□□□□ -1.1
VPS39-209ENST00000568029 A0A1W2PNR3 127 aa8.16□□□□□ -1.1
VPS39-209ENST00000568029 ADGRB2O60241 1585 aa8.16□□□□□ -1.1
VPS39-209ENST00000568029 ARSJQ5FYB0 599 aaPredicted RBP8.16□□□□□ -1.1
VPS39-209ENST00000568029 DNAJC14Q6Y2X3 702 aaPredicted RBP8.16□□□□□ -1.1
VPS39-209ENST00000568029 CASZ1Q86V15 1759 aa8.16□□□□□ -1.1
VPS39-209ENST00000568029 RBCK1Q9BYM8 510 aa8.16□□□□□ -1.1
VPS39-209ENST00000568029 C11orf16Q9NQ32 467 aa8.16□□□□□ -1.1
VPS39-209ENST00000568029 FMN2Q9NZ56 1722 aa8.16□□□□□ -1.1
VPS39-209ENST00000568029 GMPR2Q9P2T1 348 aaKnown RBP8.16□□□□□ -1.1
VPS39-209ENST00000568029 ANKRD50Q9ULJ7 1429 aa8.16□□□□□ -1.1
VPS39-209ENST00000568029 ANKRD30BQ9BXX2 1392 aa8.15□□□□□ -1.1
VPS39-209ENST00000568029 H7C1W4 665 aa8.15□□□□□ -1.1
VPS39-209ENST00000568029 NDUFB5O43674 189 aa8.15□□□□□ -1.1
VPS39-209ENST00000568029 MICAL2O94851 1124 aa8.15□□□□□ -1.1
VPS39-209ENST00000568029 VPS72Q15906 364 aa8.15□□□□□ -1.1
VPS39-209ENST00000568029 EFHC2Q5JST6 749 aa8.15□□□□□ -1.1
VPS39-209ENST00000568029 FIGNL1Q6PIW4 674 aa8.15□□□□□ -1.1
VPS39-209ENST00000568029 TREML1Q86YW5 311 aa8.15□□□□□ -1.1
VPS39-209ENST00000568029 RGS22Q8NE09 1264 aa8.15□□□□□ -1.1
VPS39-209ENST00000568029 NEUROD4Q9HD90 331 aa8.15□□□□□ -1.1
VPS39-209ENST00000568029 CRYBG1Q9Y4K1 1723 aa8.15□□□□□ -1.11
VPS39-209ENST00000568029 ZBTB39O15060 712 aa8.14□□□□□ -1.11
VPS39-209ENST00000568029 FZD6O60353 706 aa8.14□□□□□ -1.11
VPS39-209ENST00000568029 RPLP1P05386 114 aaKnown RBP8.14□□□□□ -1.11
VPS39-209ENST00000568029 MZF1P28698 734 aaPredicted RBP8.14□□□□□ -1.11
VPS39-209ENST00000568029 ZAP70P43403 619 aa8.14□□□□□ -1.11
VPS39-209ENST00000568029 USP5P45974 858 aa8.14□□□□□ -1.11
VPS39-209ENST00000568029 FAM26DQ5JW98 314 aa8.14□□□□□ -1.11
VPS39-209ENST00000568029 ASB16Q96NS5 453 aa8.14□□□□□ -1.11
VPS39-209ENST00000568029 BRPF3Q9ULD4 1205 aa8.14□□□□□ -1.11
VPS39-209ENST00000568029 KIF1AQ12756 1690 aa8.14□□□□□ -1.11
VPS39-209ENST00000568029 NPHP3Q7Z494 1330 aa8.13□□□□□ -1.11
VPS39-209ENST00000568029 IFT172Q9UG01 1749 aa8.13□□□□□ -1.11
VPS39-209ENST00000568029 INPP5BP32019 993 aa8.13□□□□□ -1.11
VPS39-209ENST00000568029 DDX10Q13206 875 aaKnown RBP8.13□□□□□ -1.11
VPS39-209ENST00000568029 COL19A1Q14993 1142 aa8.13□□□□□ -1.11
VPS39-209ENST00000568029 BTLAQ7Z6A9 289 aa8.13□□□□□ -1.11
VPS39-209ENST00000568029 RGL4Q8IZJ4 473 aa8.13□□□□□ -1.11
VPS39-209ENST00000568029 CCDC155Q8N6L0 562 aa8.13□□□□□ -1.11
VPS39-209ENST00000568029 ZNF280CQ8ND82 737 aa8.13□□□□□ -1.11
VPS39-209ENST00000568029 YTHDC1Q96MU7 727 aaKnown RBP8.13□□□□□ -1.11
VPS39-209ENST00000568029 CAMKK2Q96RR4 588 aa8.13□□□□□ -1.11
VPS39-209ENST00000568029 GAS2L1Q99501 681 aaPredicted RBP8.13□□□□□ -1.11
VPS39-209ENST00000568029 RUBCNLQ9H714 662 aa8.13□□□□□ -1.11
VPS39-209ENST00000568029 GPAMQ9HCL2 828 aa8.13□□□□□ -1.11
VPS39-209ENST00000568029 PRAG1Q86YV5 1406 aa8.12□□□□□ -1.11
VPS39-209ENST00000568029 SPATA31A3Q5VYP0 1347 aa8.12□□□□□ -1.11
VPS39-209ENST00000568029 GOLGB1Q14789 3259 aaKnown RBP8.12□□□□□ -1.11
VPS39-209ENST00000568029 SOBPA7XYQ1 873 aa8.12□□□□□ -1.11
VPS39-209ENST00000568029 FAM157BP0CG42 384 aa8.12□□□□□ -1.11
VPS39-209ENST00000568029 ARSDP51689 593 aa8.12□□□□□ -1.11
VPS39-209ENST00000568029 C1QTNF8P60827 252 aa8.12□□□□□ -1.11
VPS39-209ENST00000568029 LRRC69Q6ZNQ3 347 aa8.12□□□□□ -1.11
VPS39-209ENST00000568029 ZSCAN29Q8IWY8 852 aaPredicted RBP8.12□□□□□ -1.11
VPS39-209ENST00000568029 TRIM22Q8IYM9 498 aa8.12□□□□□ -1.11
VPS39-209ENST00000568029 KLRG1Q96E93 195 aa8.12□□□□□ -1.11
VPS39-209ENST00000568029 HSH2DQ96JZ2 352 aa8.12□□□□□ -1.11
VPS39-209ENST00000568029 PDGFDQ9GZP0 370 aaPredicted RBP8.12□□□□□ -1.11
VPS39-209ENST00000568029 GJA3Q9Y6H8 435 aa8.12□□□□□ -1.11
VPS39-209ENST00000568029 NUP155O75694 1391 aa8.11□□□□□ -1.11
VPS39-209ENST00000568029 PLEKHH1Q9ULM0 1364 aa8.11□□□□□ -1.11
VPS39-209ENST00000568029 NINLQ9Y2I6 1382 aa8.11□□□□□ -1.11
VPS39-209ENST00000568029 C11orf95C9JLR9 678 aaPredicted RBP8.11□□□□□ -1.11
VPS39-209ENST00000568029 OPLAHO14841 1288 aa8.11□□□□□ -1.11
VPS39-209ENST00000568029 TRIM37O94972 964 aa8.11□□□□□ -1.11
VPS39-209ENST00000568029 SNRPBP14678 240 aaKnown RBP8.11□□□□□ -1.11
VPS39-209ENST00000568029 EPB42P16452 691 aa8.11□□□□□ -1.11
VPS39-209ENST00000568029 PCSK2P16519 638 aa8.11□□□□□ -1.11
VPS39-209ENST00000568029 MAPK1P28482 360 aa8.11□□□□□ -1.11
VPS39-209ENST00000568029 IDH3AP50213 366 aa8.11□□□□□ -1.11
VPS39-209ENST00000568029 KCNQ4P56696 695 aa8.11□□□□□ -1.11
VPS39-209ENST00000568029 TYRO3Q06418 890 aa8.11□□□□□ -1.11
VPS39-209ENST00000568029 PDE3BQ13370 1112 aa8.11□□□□□ -1.11
VPS39-209ENST00000568029 GJD3Q8N144 294 aa8.11□□□□□ -1.11
VPS39-209ENST00000568029 PIK3R5Q8WYR1 880 aa8.11□□□□□ -1.11
VPS39-209ENST00000568029 FAM129BQ96TA1 746 aa8.11□□□□□ -1.11
VPS39-209ENST00000568029 TRPM3Q9HCF6 1732 aaPredicted RBP8.11□□□□□ -1.11
VPS39-209ENST00000568029 TNS3Q68CZ2 1445 aa8.11□□□□□ -1.11
VPS39-209ENST00000568029 PPLO60437 1756 aa8.1□□□□□ -1.11
VPS39-209ENST00000568029 COL14A1Q05707 1796 aaKnown RBP8.1□□□□□ -1.11
VPS39-209ENST00000568029 SHANK3Q9BYB0 1731 aa8.1□□□□□ -1.11
VPS39-209ENST00000568029 ANP32CO43423 234 aa8.1□□□□□ -1.11
VPS39-209ENST00000568029 PDGFAP04085 211 aa8.1□□□□□ -1.11
VPS39-209ENST00000568029 ITGA6P23229 1130 aa8.1□□□□□ -1.11
VPS39-209ENST00000568029 EHHADHQ08426 723 aa8.1□□□□□ -1.11
VPS39-209ENST00000568029 LAMC2Q13753 1193 aa8.1□□□□□ -1.11
VPS39-209ENST00000568029 UBAP2LQ14157 1087 aaKnown RBP8.1□□□□□ -1.11
VPS39-209ENST00000568029 ZNF326Q5BKZ1 582 aaKnown RBP8.1□□□□□ -1.11
VPS39-209ENST00000568029 ZNF775Q96BV0 537 aaPredicted RBP8.1□□□□□ -1.11
VPS39-209ENST00000568029 DMRTB1Q96MA1 342 aa8.1□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms