RNA–Protein interactions for RNA: ENST00000567992.1

CLK3-220, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 603 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-220ENST00000567992 H7C1D1 291 aa12.15□□□□□ -0.46
CLK3-220ENST00000567992 USP17L8P0C7I0 530 aa12.15□□□□□ -0.46
CLK3-220ENST00000567992 HSPA6P17066 643 aa12.15□□□□□ -0.46
CLK3-220ENST00000567992 FKBP1AP62942 108 aaKnown RBP12.15□□□□□ -0.46
CLK3-220ENST00000567992 TBC1D10BQ4KMP7 808 aaPredicted RBP12.15□□□□□ -0.46
CLK3-220ENST00000567992 MAP1SQ66K74 1059 aaPredicted RBP12.15□□□□□ -0.46
CLK3-220ENST00000567992 IQSEC3Q9UPP2 1182 aaPredicted RBP12.15□□□□□ -0.46
CLK3-220ENST00000567992 POLR2AP24928 1970 aaKnown RBP12.14□□□□□ -0.47
CLK3-220ENST00000567992 A0A1B0GUL7 405 aa12.14□□□□□ -0.47
CLK3-220ENST00000567992 ZBTB22O15209 634 aa12.14□□□□□ -0.47
CLK3-220ENST00000567992 SURF6O75683 361 aaKnown RBP12.14□□□□□ -0.47
CLK3-220ENST00000567992 KIF4BQ2VIQ3 1234 aa12.14□□□□□ -0.47
CLK3-220ENST00000567992 CAVIN4Q5BKX8 364 aa12.14□□□□□ -0.47
CLK3-220ENST00000567992 KIAA0825Q8IV33 1275 aa12.14□□□□□ -0.47
CLK3-220ENST00000567992 RPAP2Q8IXW5 612 aaPredicted RBP12.14□□□□□ -0.47
CLK3-220ENST00000567992 CLEC11AQ9Y240 323 aa12.14□□□□□ -0.47
CLK3-220ENST00000567992 TRPM7Q96QT4 1865 aa12.14□□□□□ -0.47
CLK3-220ENST00000567992 ASTN2O75129 1339 aaPredicted RBP12.13□□□□□ -0.47
CLK3-220ENST00000567992 PHKA1P46020 1223 aa12.13□□□□□ -0.47
CLK3-220ENST00000567992 TIMM10P62072 90 aa12.13□□□□□ -0.47
CLK3-220ENST00000567992 G3BP1Q13283 466 aaKnown RBP eCLIP12.13□□□□□ -0.47
CLK3-220ENST00000567992 GRIK5Q16478 980 aa12.13□□□□□ -0.47
CLK3-220ENST00000567992 ZC3H15Q8WU90 426 aaKnown RBP12.13□□□□□ -0.47
CLK3-220ENST00000567992 ZBED3Q96IU2 234 aaPredicted RBP12.13□□□□□ -0.47
CLK3-220ENST00000567992 CHMP4BQ9H444 224 aaKnown RBP12.13□□□□□ -0.47
CLK3-220ENST00000567992 MYOZ2Q9NPC6 264 aa12.13□□□□□ -0.47
CLK3-220ENST00000567992 AKAP11Q9UKA4 1901 aa12.12□□□□□ -0.47
CLK3-220ENST00000567992 MFSD14BQ5SR56 506 aa12.12□□□□□ -0.47
CLK3-220ENST00000567992 RBM26Q5T8P6 1007 aaKnown RBP12.12□□□□□ -0.47
CLK3-220ENST00000567992 CCDC102BQ68D86 513 aa12.12□□□□□ -0.47
CLK3-220ENST00000567992 VPS37DQ86XT2 251 aa12.12□□□□□ -0.47
CLK3-220ENST00000567992 CNTROBQ8N137 903 aa12.12□□□□□ -0.47
CLK3-220ENST00000567992 XAGE2Q96GT9 111 aa12.12□□□□□ -0.47
CLK3-220ENST00000567992 GPR108Q9NPR9 543 aa12.12□□□□□ -0.47
CLK3-220ENST00000567992 EXOC6BQ9Y2D4 811 aa12.12□□□□□ -0.47
CLK3-220ENST00000567992 AKAP2Q9Y2D5 859 aa12.12□□□□□ -0.47
CLK3-220ENST00000567992 AOX1Q06278 1338 aa12.11□□□□□ -0.47
CLK3-220ENST00000567992 MMP14P50281 582 aa12.11□□□□□ -0.47
CLK3-220ENST00000567992 APLP1P51693 650 aa12.11□□□□□ -0.47
CLK3-220ENST00000567992 FMR1Q06787 632 aaKnown RBP eCLIP12.11□□□□□ -0.47
CLK3-220ENST00000567992 CHAF1AQ13111 956 aaPredicted RBP12.11□□□□□ -0.47
CLK3-220ENST00000567992 TNNI3KQ59H18 835 aa12.11□□□□□ -0.47
CLK3-220ENST00000567992 CRBNQ96SW2 442 aa12.11□□□□□ -0.47
CLK3-220ENST00000567992 GLIS2Q9BZE0 524 aaPredicted RBP12.11□□□□□ -0.47
CLK3-220ENST00000567992 PCDHAC2Q9Y5I4 1007 aa12.11□□□□□ -0.47
CLK3-220ENST00000567992 FPGT-TNNI3KV9GXZ4 949 aa12.11□□□□□ -0.47
CLK3-220ENST00000567992 F8W031 263 aaPredicted RBP12.1□□□□□ -0.47
CLK3-220ENST00000567992 TRAF5O00463 557 aa12.1□□□□□ -0.47
CLK3-220ENST00000567992 WNT10BO00744 389 aa12.1□□□□□ -0.47
CLK3-220ENST00000567992 HTRA3P83110 453 aa12.1□□□□□ -0.47
CLK3-220ENST00000567992 OS9Q13438 667 aaPredicted RBP12.1□□□□□ -0.47
CLK3-220ENST00000567992 RASGRF1Q13972 1273 aa12.1□□□□□ -0.47
CLK3-220ENST00000567992 SCARF1Q14162 830 aa12.1□□□□□ -0.47
CLK3-220ENST00000567992 NBPF9Q3BBW0 867 aa12.1□□□□□ -0.47
CLK3-220ENST00000567992 DLK2Q6UY11 383 aa12.1□□□□□ -0.47
CLK3-220ENST00000567992 OGFOD1Q8N543 542 aa12.1□□□□□ -0.47
CLK3-220ENST00000567992 MTMR14Q8NCE2 650 aa12.1□□□□□ -0.47
CLK3-220ENST00000567992 GGA3Q9NZ52 723 aa12.1□□□□□ -0.47
CLK3-220ENST00000567992 PDS5AQ29RF7 1337 aaKnown RBP12.1□□□□□ -0.47
CLK3-220ENST00000567992 PCNTO95613 3336 aa12.09□□□□□ -0.47
CLK3-220ENST00000567992 ADM5C9JUS6 153 aa12.09□□□□□ -0.47
CLK3-220ENST00000567992 SEMA3EO15041 775 aa12.09□□□□□ -0.47
CLK3-220ENST00000567992 HMMRO75330 724 aa12.09□□□□□ -0.47
CLK3-220ENST00000567992 ARID4AP29374 1257 aaPredicted RBP12.09□□□□□ -0.47
CLK3-220ENST00000567992 ANGEL2Q5VTE6 544 aaKnown RBP12.09□□□□□ -0.47
CLK3-220ENST00000567992 TBC1D22AQ8WUA7 517 aa12.09□□□□□ -0.47
CLK3-220ENST00000567992 EAF2Q96CJ1 260 aaPredicted RBP12.09□□□□□ -0.47
CLK3-220ENST00000567992 NEUROD6Q96NK8 337 aa12.09□□□□□ -0.47
CLK3-220ENST00000567992 DBNDD2Q9BQY9 259 aa12.09□□□□□ -0.47
CLK3-220ENST00000567992 TLR7Q9NYK1 1049 aaKnown RBP12.09□□□□□ -0.47
CLK3-220ENST00000567992 DBNLQ9UJU6 430 aaKnown RBP12.09□□□□□ -0.47
CLK3-220ENST00000567992 HDAC9Q9UKV0 1011 aa12.09□□□□□ -0.47
CLK3-220ENST00000567992 TTF2Q9UNY4 1162 aaKnown RBP12.09□□□□□ -0.47
CLK3-220ENST00000567992 PCDHB15Q9Y5E8 787 aa12.09□□□□□ -0.47
CLK3-220ENST00000567992 MAST2Q6P0Q8 1798 aa12.09□□□□□ -0.47
CLK3-220ENST00000567992 PITPNM2Q9BZ72 1349 aa12.09□□□□□ -0.47
CLK3-220ENST00000567992 SALL1Q9NSC2 1324 aa12.09□□□□□ -0.47
CLK3-220ENST00000567992 SPDYE2BA6NHP3 402 aa12.08□□□□□ -0.48
CLK3-220ENST00000567992 FRAT2O75474 233 aaPredicted RBP12.08□□□□□ -0.48
CLK3-220ENST00000567992 SPDYE6P0CI01 402 aa12.08□□□□□ -0.48
CLK3-220ENST00000567992 CFAP100Q494V2 611 aa12.08□□□□□ -0.48
CLK3-220ENST00000567992 ERC1Q8IUD2 1116 aa12.08□□□□□ -0.48
CLK3-220ENST00000567992 RHPN1Q8TCX5 695 aa12.08□□□□□ -0.48
CLK3-220ENST00000567992 GNL3LQ9NVN8 582 aaKnown RBP12.08□□□□□ -0.48
CLK3-220ENST00000567992 DENND2AQ9ULE3 1009 aa12.08□□□□□ -0.48
CLK3-220ENST00000567992 MYO5AQ9Y4I1 1855 aaKnown RBP12.08□□□□□ -0.48
CLK3-220ENST00000567992 DOCK2Q92608 1830 aa12.07□□□□□ -0.48
CLK3-220ENST00000567992 MCAMP43121 646 aa12.07□□□□□ -0.48
CLK3-220ENST00000567992 CST9Q5W186 159 aa12.07□□□□□ -0.48
CLK3-220ENST00000567992 PI16Q6UXB8 463 aa12.07□□□□□ -0.48
CLK3-220ENST00000567992 CDC37L1Q7L3B6 337 aa12.07□□□□□ -0.48
CLK3-220ENST00000567992 KRT26Q7Z3Y9 468 aa12.07□□□□□ -0.48
CLK3-220ENST00000567992 USP48Q86UV5 1035 aa12.07□□□□□ -0.48
CLK3-220ENST00000567992 WDR66Q8TBY9 1149 aa12.07□□□□□ -0.48
CLK3-220ENST00000567992 PRMT6Q96LA8 375 aaPredicted RBP12.07□□□□□ -0.48
CLK3-220ENST00000567992 CREBZFQ9NS37 354 aa12.07□□□□□ -0.48
CLK3-220ENST00000567992 HMG20BQ9P0W2 317 aa12.07□□□□□ -0.48
CLK3-220ENST00000567992 SERPINA10Q9UK55 444 aa12.07□□□□□ -0.48
CLK3-220ENST00000567992 SCAF8Q9UPN6 1271 aaKnown RBP12.07□□□□□ -0.48
CLK3-220ENST00000567992 SUGT1Q9Y2Z0 365 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms