RNA–Protein interactions for RNA: ENST00000565452.1

VPS9D1-205, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 178 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-205ENST00000565452 UBXN2AP68543 259 aa11.77□□□□□ -0.53
VPS9D1-205ENST00000565452 GTF2IP78347 998 aa11.77□□□□□ -0.53
VPS9D1-205ENST00000565452 RAET1EQ8TD07 263 aa11.77□□□□□ -0.53
VPS9D1-205ENST00000565452 CDC5LQ99459 802 aaKnown RBP11.77□□□□□ -0.53
VPS9D1-205ENST00000565452 BSDC1Q9NW68 430 aaPredicted RBP11.77□□□□□ -0.53
VPS9D1-205ENST00000565452 MINPP1Q9UNW1 487 aa11.77□□□□□ -0.53
VPS9D1-205ENST00000565452 LEMD3Q9Y2U8 911 aa11.77□□□□□ -0.53
VPS9D1-205ENST00000565452 SCN9AQ15858 1988 aa11.77□□□□□ -0.53
VPS9D1-205ENST00000565452 MED23Q9ULK4 1368 aa11.77□□□□□ -0.53
VPS9D1-205ENST00000565452 LAMB4A4D0S4 1761 aa11.77□□□□□ -0.53
VPS9D1-205ENST00000565452 TAF1P21675 1872 aa11.76□□□□□ -0.53
VPS9D1-205ENST00000565452 FARP2O94887 1054 aaPredicted RBP11.76□□□□□ -0.53
VPS9D1-205ENST00000565452 BMP8BP34820 402 aa11.76□□□□□ -0.53
VPS9D1-205ENST00000565452 MAP3K9P80192 1104 aa11.76□□□□□ -0.53
VPS9D1-205ENST00000565452 PHF6Q8IWS0 365 aaKnown RBP eCLIP11.76□□□□□ -0.53
VPS9D1-205ENST00000565452 FAM43AQ8N2R8 423 aa11.76□□□□□ -0.53
VPS9D1-205ENST00000565452 CCDC85AQ96PX6 553 aaPredicted RBP11.76□□□□□ -0.53
VPS9D1-205ENST00000565452 PLEKHF1Q96S99 279 aa11.76□□□□□ -0.53
VPS9D1-205ENST00000565452 ARHGAP39Q9C0H5 1083 aa11.76□□□□□ -0.53
VPS9D1-205ENST00000565452 VEZTQ9HBM0 779 aa11.76□□□□□ -0.53
VPS9D1-205ENST00000565452 ZCCHC17Q9NP64 241 aaKnown RBP11.76□□□□□ -0.53
VPS9D1-205ENST00000565452 HYPKQ9NX55 129 aa11.76□□□□□ -0.53
VPS9D1-205ENST00000565452 MTMR10Q9NXD2 777 aa11.76□□□□□ -0.53
VPS9D1-205ENST00000565452 CHPF2Q9P2E5 772 aa11.76□□□□□ -0.53
VPS9D1-205ENST00000565452 DBF4Q9UBU7 674 aaPredicted RBP11.76□□□□□ -0.53
VPS9D1-205ENST00000565452 SRRDQ9UH36 339 aa11.76□□□□□ -0.53
VPS9D1-205ENST00000565452 ZNF804BA4D1E1 1349 aa11.76□□□□□ -0.53
VPS9D1-205ENST00000565452 FMNL1O95466 1100 aaPredicted RBP11.75□□□□□ -0.53
VPS9D1-205ENST00000565452 CETPP11597 493 aa11.75□□□□□ -0.53
VPS9D1-205ENST00000565452 PSMC4P43686 418 aa11.75□□□□□ -0.53
VPS9D1-205ENST00000565452 RASA3Q14644 834 aa11.75□□□□□ -0.53
VPS9D1-205ENST00000565452 RIC3Q7Z5B4 369 aa11.75□□□□□ -0.53
VPS9D1-205ENST00000565452 PRDM6Q9NQX0 595 aa11.75□□□□□ -0.53
VPS9D1-205ENST00000565452 RIPOR2Q9Y4F9 1068 aa11.75□□□□□ -0.53
VPS9D1-205ENST00000565452 CLRN2A0PK11 232 aa11.74□□□□□ -0.53
VPS9D1-205ENST00000565452 SGPL1O95470 568 aa11.74□□□□□ -0.53
VPS9D1-205ENST00000565452 TFRCP02786 760 aaKnown RBP11.74□□□□□ -0.53
VPS9D1-205ENST00000565452 PCCAP05165 728 aaPredicted RBP11.74□□□□□ -0.53
VPS9D1-205ENST00000565452 LRIT3Q3SXY7 679 aa11.74□□□□□ -0.53
VPS9D1-205ENST00000565452 CFAP100Q494V2 611 aa11.74□□□□□ -0.53
VPS9D1-205ENST00000565452 Q7L0L9 218 aa11.74□□□□□ -0.53
VPS9D1-205ENST00000565452 CCDC191Q8NCU4 936 aa11.74□□□□□ -0.53
VPS9D1-205ENST00000565452 U2AF1L4Q8WU68 220 aaKnown RBP11.74□□□□□ -0.53
VPS9D1-205ENST00000565452 PRMT6Q96LA8 375 aaPredicted RBP11.74□□□□□ -0.53
VPS9D1-205ENST00000565452 CSADQ9Y600 493 aa11.74□□□□□ -0.53
VPS9D1-205ENST00000565452 MAPK8IP3Q9UPT6 1336 aa11.74□□□□□ -0.53
VPS9D1-205ENST00000565452 DDX60Q8IY21 1712 aaKnown RBP11.74□□□□□ -0.53
VPS9D1-205ENST00000565452 LAMB2P55268 1798 aa11.74□□□□□ -0.53
VPS9D1-205ENST00000565452 SPDYE2BA6NHP3 402 aa11.73□□□□□ -0.53
VPS9D1-205ENST00000565452 SPDYE6P0CI01 402 aa11.73□□□□□ -0.53
VPS9D1-205ENST00000565452 RIPK4P57078 832 aa11.73□□□□□ -0.53
VPS9D1-205ENST00000565452 TNFAIP1Q13829 316 aa11.73□□□□□ -0.53
VPS9D1-205ENST00000565452 HDGFL1Q5TGJ6 251 aa11.73□□□□□ -0.53
VPS9D1-205ENST00000565452 ANKRD2Q9GZV1 360 aa11.73□□□□□ -0.53
VPS9D1-205ENST00000565452 RBM5P52756 815 aaKnown RBP eCLIP11.72□□□□□ -0.53
VPS9D1-205ENST00000565452 GOLGA2Q08379 1002 aa11.72□□□□□ -0.53
VPS9D1-205ENST00000565452 PPP1R3FQ6ZSY5 799 aaPredicted RBP11.72□□□□□ -0.53
VPS9D1-205ENST00000565452 TXNRD3Q86VQ6 643 aa11.72□□□□□ -0.53
VPS9D1-205ENST00000565452 GDF15Q99988 308 aa11.72□□□□□ -0.53
VPS9D1-205ENST00000565452 BTBD19C9JJ37 291 aa11.71□□□□□ -0.53
VPS9D1-205ENST00000565452 F8W031 263 aaPredicted RBP11.71□□□□□ -0.53
VPS9D1-205ENST00000565452 ECM2O94769 699 aaPredicted RBP11.71□□□□□ -0.53
VPS9D1-205ENST00000565452 OSBPP22059 807 aa11.71□□□□□ -0.53
VPS9D1-205ENST00000565452 LMOD3Q0VAK6 560 aa11.71□□□□□ -0.53
VPS9D1-205ENST00000565452 SNAPC2Q13487 334 aa11.71□□□□□ -0.53
VPS9D1-205ENST00000565452 VGLL4Q14135 290 aa11.71□□□□□ -0.53
VPS9D1-205ENST00000565452 C17orf99Q6UX52 265 aa11.71□□□□□ -0.53
VPS9D1-205ENST00000565452 CNKSR2Q8WXI2 1034 aa11.71□□□□□ -0.53
VPS9D1-205ENST00000565452 JARID2Q92833 1246 aaPredicted RBP11.71□□□□□ -0.53
VPS9D1-205ENST00000565452 CWC25Q9NXE8 425 aaPredicted RBP11.71□□□□□ -0.53
VPS9D1-205ENST00000565452 KDM3BQ7LBC6 1761 aa11.71□□□□□ -0.54
VPS9D1-205ENST00000565452 CHL1O00533 1208 aa11.7□□□□□ -0.54
VPS9D1-205ENST00000565452 HOXB7P09629 217 aa11.7□□□□□ -0.54
VPS9D1-205ENST00000565452 IGHMBP2P38935 993 aaKnown RBP11.7□□□□□ -0.54
VPS9D1-205ENST00000565452 KCNJ4P48050 445 aa11.7□□□□□ -0.54
VPS9D1-205ENST00000565452 SLAIN1Q8ND83 568 aa11.7□□□□□ -0.54
VPS9D1-205ENST00000565452 TTLL11Q8NHH1 800 aa11.7□□□□□ -0.54
VPS9D1-205ENST00000565452 MYD88Q99836 296 aa11.7□□□□□ -0.54
VPS9D1-205ENST00000565452 CD209Q9NNX6 404 aa11.7□□□□□ -0.54
VPS9D1-205ENST00000565452 PCDHAC2Q9Y5I4 1007 aa11.7□□□□□ -0.54
VPS9D1-205ENST00000565452 MYPNQ86TC9 1320 aa11.69□□□□□ -0.54
VPS9D1-205ENST00000565452 TNNI2P48788 182 aa11.69□□□□□ -0.54
VPS9D1-205ENST00000565452 BCAMP50895 628 aa11.69□□□□□ -0.54
VPS9D1-205ENST00000565452 CTSWP56202 376 aa11.69□□□□□ -0.54
VPS9D1-205ENST00000565452 FKBP1AP62942 108 aaKnown RBP11.69□□□□□ -0.54
VPS9D1-205ENST00000565452 KRT24Q2M2I5 525 aa11.69□□□□□ -0.54
VPS9D1-205ENST00000565452 NECAB2Q7Z6G3 386 aa11.69□□□□□ -0.54
VPS9D1-205ENST00000565452 ERO1BQ86YB8 467 aa11.69□□□□□ -0.54
VPS9D1-205ENST00000565452 UNC93B1Q9H1C4 597 aa11.69□□□□□ -0.54
VPS9D1-205ENST00000565452 CPA4Q9UI42 421 aa11.69□□□□□ -0.54
VPS9D1-205ENST00000565452 LAS1LQ9Y4W2 734 aaKnown RBP11.69□□□□□ -0.54
VPS9D1-205ENST00000565452 SSC5DA1L4H1 1573 aa11.69□□□□□ -0.54
VPS9D1-205ENST00000565452 SPDYE5A6NIY4 337 aa11.68□□□□□ -0.54
VPS9D1-205ENST00000565452 TDHQ8IZJ6 230 aa11.68□□□□□ -0.54
VPS9D1-205ENST00000565452 CERS5Q8N5B7 392 aa11.68□□□□□ -0.54
VPS9D1-205ENST00000565452 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.68□□□□□ -0.54
VPS9D1-205ENST00000565452 PAWRQ96IZ0 340 aaKnown RBP11.68□□□□□ -0.54
VPS9D1-205ENST00000565452 MPHOSPH8Q99549 860 aa11.68□□□□□ -0.54
VPS9D1-205ENST00000565452 COL4A1P02462 1669 aa11.68□□□□□ -0.54
VPS9D1-205ENST00000565452 LAMA3Q16787 3333 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms