RNA–Protein interactions for RNA: ENST00000564678.1

HERPUD1-209, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, humanhuman

TSL 1 (best)

Gene HERPUD1, Length 2,199 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD1-209ENST00000564678 SPEF2Q9C093 1822 aa8.63□□□□□ -1.03
HERPUD1-209ENST00000564678 PRPF40AO75400 957 aaKnown RBP8.63□□□□□ -1.03
HERPUD1-209ENST00000564678 ZNF445P59923 1031 aa8.63□□□□□ -1.03
HERPUD1-209ENST00000564678 IFIT5Q13325 482 aaKnown RBP8.63□□□□□ -1.03
HERPUD1-209ENST00000564678 TAF7LQ5H9L4 462 aa8.63□□□□□ -1.03
HERPUD1-209ENST00000564678 BLOC1S2Q6QNY1 142 aa8.63□□□□□ -1.03
HERPUD1-209ENST00000564678 SMC3Q9UQE7 1217 aa8.63□□□□□ -1.03
HERPUD1-209ENST00000564678 COL16A1Q07092 1604 aaPredicted RBP8.62□□□□□ -1.03
HERPUD1-209ENST00000564678 A0A1B0GUL7 405 aa8.62□□□□□ -1.03
HERPUD1-209ENST00000564678 RECKO95980 971 aa8.62□□□□□ -1.03
HERPUD1-209ENST00000564678 TIMM10P62072 90 aa8.62□□□□□ -1.03
HERPUD1-209ENST00000564678 LRRC24Q50LG9 513 aa8.62□□□□□ -1.03
HERPUD1-209ENST00000564678 CCDC158Q5M9N0 1113 aa8.62□□□□□ -1.03
HERPUD1-209ENST00000564678 ZNF589Q86UQ0 364 aaPredicted RBP8.62□□□□□ -1.03
HERPUD1-209ENST00000564678 DNAJC2Q99543 621 aaKnown RBP8.62□□□□□ -1.03
HERPUD1-209ENST00000564678 PAG1Q9NWQ8 432 aa8.62□□□□□ -1.03
HERPUD1-209ENST00000564678 ABCC12Q96J65 1359 aa8.62□□□□□ -1.03
HERPUD1-209ENST00000564678 KAT6BQ8WYB5 2073 aa8.62□□□□□ -1.03
HERPUD1-209ENST00000564678 ZNF609O15014 1411 aa8.62□□□□□ -1.03
HERPUD1-209ENST00000564678 STX6O43752 255 aa8.62□□□□□ -1.03
HERPUD1-209ENST00000564678 IFIT1P09914 478 aaKnown RBP8.62□□□□□ -1.03
HERPUD1-209ENST00000564678 RPS6KB1P23443 525 aa8.62□□□□□ -1.03
HERPUD1-209ENST00000564678 QPCTQ16769 361 aa8.62□□□□□ -1.03
HERPUD1-209ENST00000564678 CSPP1Q1MSJ5 1256 aa8.62□□□□□ -1.03
HERPUD1-209ENST00000564678 NLRP10Q86W26 655 aa8.62□□□□□ -1.03
HERPUD1-209ENST00000564678 EDC3Q96F86 508 aaKnown RBP8.62□□□□□ -1.03
HERPUD1-209ENST00000564678 DSCC1Q9BVC3 393 aa8.62□□□□□ -1.03
HERPUD1-209ENST00000564678 SPATA31A1Q5TZJ5 1347 aa8.61□□□□□ -1.03
HERPUD1-209ENST00000564678 MAP3K13O43283 966 aa8.61□□□□□ -1.03
HERPUD1-209ENST00000564678 ZSCAN22P10073 491 aaPredicted RBP8.61□□□□□ -1.03
HERPUD1-209ENST00000564678 CC2D2BQ6DHV5 1058 aa8.61□□□□□ -1.03
HERPUD1-209ENST00000564678 STK32AQ8WU08 396 aa8.61□□□□□ -1.03
HERPUD1-209ENST00000564678 FAM89AQ96GI7 184 aa8.61□□□□□ -1.03
HERPUD1-209ENST00000564678 GJD4Q96KN9 370 aaPredicted RBP8.61□□□□□ -1.03
HERPUD1-209ENST00000564678 SLC4A9Q96Q91 983 aa8.61□□□□□ -1.03
HERPUD1-209ENST00000564678 GTF3C5Q9Y5Q8 519 aaPredicted RBP8.61□□□□□ -1.03
HERPUD1-209ENST00000564678 ZFYP08048 801 aaPredicted RBP8.61□□□□□ -1.03
HERPUD1-209ENST00000564678 SYT1P21579 422 aa8.61□□□□□ -1.03
HERPUD1-209ENST00000564678 DDB1Q16531 1140 aa8.61□□□□□ -1.03
HERPUD1-209ENST00000564678 ME3Q16798 604 aa8.61□□□□□ -1.03
HERPUD1-209ENST00000564678 ZMYM1Q5SVZ6 1142 aa8.61□□□□□ -1.03
HERPUD1-209ENST00000564678 GAS2L3Q86XJ1 694 aa8.61□□□□□ -1.03
HERPUD1-209ENST00000564678 NPAS4Q8IUM7 802 aa8.61□□□□□ -1.03
HERPUD1-209ENST00000564678 TMEM87AQ8NBN3 555 aa8.61□□□□□ -1.03
HERPUD1-209ENST00000564678 TTLL11Q8NHH1 800 aa8.61□□□□□ -1.03
HERPUD1-209ENST00000564678 ZNF594Q96JF6 807 aaPredicted RBP8.61□□□□□ -1.03
HERPUD1-209ENST00000564678 PUS3Q9BZE2 481 aaKnown RBP8.61□□□□□ -1.03
HERPUD1-209ENST00000564678 NPDC1Q9NQX5 325 aaPredicted RBP8.61□□□□□ -1.03
HERPUD1-209ENST00000564678 WNK3Q9BYP7 1800 aa8.6□□□□□ -1.03
HERPUD1-209ENST00000564678 PDE8AO60658 829 aa8.6□□□□□ -1.03
HERPUD1-209ENST00000564678 AP1G2O75843 785 aa8.6□□□□□ -1.03
HERPUD1-209ENST00000564678 CPA1P15085 419 aa8.6□□□□□ -1.03
HERPUD1-209ENST00000564678 PDCP20941 246 aa8.6□□□□□ -1.03
HERPUD1-209ENST00000564678 HLFQ16534 295 aa8.6□□□□□ -1.03
HERPUD1-209ENST00000564678 TMEM164Q5U3C3 297 aa8.6□□□□□ -1.03
HERPUD1-209ENST00000564678 DDX46Q7L014 1031 aaKnown RBP8.6□□□□□ -1.03
HERPUD1-209ENST00000564678 DPH6Q7L8W6 267 aa8.6□□□□□ -1.03
HERPUD1-209ENST00000564678 ZNF512BQ96KM6 892 aaPredicted RBP8.6□□□□□ -1.03
HERPUD1-209ENST00000564678 NEK1Q96PY6 1258 aa8.6□□□□□ -1.03
HERPUD1-209ENST00000564678 ZMIZ1Q9ULJ6 1067 aa8.6□□□□□ -1.03
HERPUD1-209ENST00000564678 ZBTB1Q9Y2K1 713 aa8.6□□□□□ -1.03
HERPUD1-209ENST00000564678 RIPOR2Q9Y4F9 1068 aa8.6□□□□□ -1.03
HERPUD1-209ENST00000564678 LTBP4Q8N2S1 1624 aa8.6□□□□□ -1.03
HERPUD1-209ENST00000564678 ANKRD36CQ5JPF3 1778 aa8.59□□□□□ -1.03
HERPUD1-209ENST00000564678 ANKRD18BA2A2Z9 1011 aa8.59□□□□□ -1.03
HERPUD1-209ENST00000564678 GOLIM4O00461 696 aa8.59□□□□□ -1.03
HERPUD1-209ENST00000564678 RNF113AO15541 343 aaKnown RBP8.59□□□□□ -1.03
HERPUD1-209ENST00000564678 GJB2P29033 226 aa8.59□□□□□ -1.03
HERPUD1-209ENST00000564678 EIF5P55010 431 aaKnown RBP8.59□□□□□ -1.03
HERPUD1-209ENST00000564678 CTSWP56202 376 aa8.59□□□□□ -1.03
HERPUD1-209ENST00000564678 MAP3K9P80192 1104 aa8.59□□□□□ -1.03
HERPUD1-209ENST00000564678 ZSCAN23Q3MJ62 389 aa8.59□□□□□ -1.03
HERPUD1-209ENST00000564678 GORABQ5T7V8 394 aa8.59□□□□□ -1.03
HERPUD1-209ENST00000564678 CAVIN1Q6NZI2 390 aaKnown RBP8.59□□□□□ -1.03
HERPUD1-209ENST00000564678 DZIP3Q86Y13 1208 aaKnown RBP8.59□□□□□ -1.03
HERPUD1-209ENST00000564678 CCDC83Q8IWF9 413 aa8.59□□□□□ -1.03
HERPUD1-209ENST00000564678 ZNF34Q8IZ26 560 aa8.59□□□□□ -1.03
HERPUD1-209ENST00000564678 GPT2Q8TD30 523 aa8.59□□□□□ -1.03
HERPUD1-209ENST00000564678 SYAP1Q96A49 352 aaPredicted RBP8.59□□□□□ -1.03
HERPUD1-209ENST00000564678 SYTL4Q96C24 671 aaPredicted RBP8.59□□□□□ -1.03
HERPUD1-209ENST00000564678 CHMP4CQ96CF2 233 aa8.59□□□□□ -1.03
HERPUD1-209ENST00000564678 XAGE2Q96GT9 111 aa8.59□□□□□ -1.03
HERPUD1-209ENST00000564678 PRDM16Q9HAZ2 1276 aa8.59□□□□□ -1.03
HERPUD1-209ENST00000564678 TPCN1Q9ULQ1 816 aa8.59□□□□□ -1.03
HERPUD1-209ENST00000564678 NUP98P52948 1817 aa8.59□□□□□ -1.03
HERPUD1-209ENST00000564678 IRS4O14654 1257 aaPredicted RBP8.59□□□□□ -1.03
HERPUD1-209ENST00000564678 LARGE1O95461 756 aa8.59□□□□□ -1.03
HERPUD1-209ENST00000564678 F13A1P00488 732 aa8.59□□□□□ -1.03
HERPUD1-209ENST00000564678 ERCC3P19447 782 aa8.59□□□□□ -1.03
HERPUD1-209ENST00000564678 ITGA6P23229 1130 aa8.59□□□□□ -1.03
HERPUD1-209ENST00000564678 SERPINB4P48594 390 aa8.59□□□□□ -1.03
HERPUD1-209ENST00000564678 TTC39AQ5SRH9 613 aa8.59□□□□□ -1.03
HERPUD1-209ENST00000564678 LDHAL6AQ6ZMR3 332 aa8.59□□□□□ -1.03
HERPUD1-209ENST00000564678 UPF1Q92900 1129 aaKnown RBP eCLIP8.59□□□□□ -1.03
HERPUD1-209ENST00000564678 ALG2Q9H553 416 aa8.59□□□□□ -1.03
HERPUD1-209ENST00000564678 TRMT112Q9UI30 125 aaKnown RBP8.59□□□□□ -1.03
HERPUD1-209ENST00000564678 MAFBQ9Y5Q3 323 aaPredicted RBP8.59□□□□□ -1.03
HERPUD1-209ENST00000564678 MYH3P11055 1940 aa8.58□□□□□ -1.04
HERPUD1-209ENST00000564678 ANKRD33BA6NCL7 494 aa8.58□□□□□ -1.04
HERPUD1-209ENST00000564678 CYP21A2P08686 494 aa8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms