RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 PDE3BQ13370 1112 aa7.71□□□□□ -1.18
VPS35-205ENST00000563984 SETDB1Q15047 1291 aa7.71□□□□□ -1.18
VPS35-205ENST00000563984 OGFOD2Q6N063 350 aa7.71□□□□□ -1.18
VPS35-205ENST00000563984 FAM9AQ8IZU1 332 aaPredicted RBP7.71□□□□□ -1.18
VPS35-205ENST00000563984 AGGF1Q8N302 714 aaeCLIP7.71□□□□□ -1.18
VPS35-205ENST00000563984 TMEM130Q8N3G9 435 aa7.71□□□□□ -1.18
VPS35-205ENST00000563984 DZANK1Q9NVP4 752 aa7.71□□□□□ -1.18
VPS35-205ENST00000563984 FOXD3Q9UJU5 478 aaPredicted RBP7.71□□□□□ -1.18
VPS35-205ENST00000563984 RAXQ9Y2V3 346 aa7.71□□□□□ -1.18
VPS35-205ENST00000563984 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP7.71□□□□□ -1.18
VPS35-205ENST00000563984 EREGO14944 169 aa7.7□□□□□ -1.18
VPS35-205ENST00000563984 GSC2O15499 205 aa7.7□□□□□ -1.18
VPS35-205ENST00000563984 ZDHHC13Q8IUH4 622 aa7.7□□□□□ -1.18
VPS35-205ENST00000563984 POP1Q99575 1024 aaKnown RBP7.7□□□□□ -1.18
VPS35-205ENST00000563984 KRTAP17-1Q9BYP8 105 aa7.7□□□□□ -1.18
VPS35-205ENST00000563984 ADAM19Q9H013 955 aa7.7□□□□□ -1.18
VPS35-205ENST00000563984 ZFYVE28Q9HCC9 887 aa7.7□□□□□ -1.18
VPS35-205ENST00000563984 AMOTL2Q9Y2J4 779 aa7.7□□□□□ -1.18
VPS35-205ENST00000563984 SOWAHDA6NJG2 315 aa7.69□□□□□ -1.18
VPS35-205ENST00000563984 F8W735 103 aaPredicted RBP7.69□□□□□ -1.18
VPS35-205ENST00000563984 NFKBIEO00221 500 aa7.69□□□□□ -1.18
VPS35-205ENST00000563984 ACPPP15309 386 aa7.69□□□□□ -1.18
VPS35-205ENST00000563984 FAM117BQ6P1L5 589 aa7.69□□□□□ -1.18
VPS35-205ENST00000563984 DTX1Q86Y01 620 aa7.69□□□□□ -1.18
VPS35-205ENST00000563984 CARD10Q9BWT7 1032 aa7.69□□□□□ -1.18
VPS35-205ENST00000563984 PDE2AO00408 941 aaPredicted RBP7.68□□□□□ -1.18
VPS35-205ENST00000563984 C8AP07357 584 aa7.68□□□□□ -1.18
VPS35-205ENST00000563984 INTS5Q6P9B9 1019 aaKnown RBP7.68□□□□□ -1.18
VPS35-205ENST00000563984 Q6ZS46 218 aa7.68□□□□□ -1.18
VPS35-205ENST00000563984 TMEM102Q8N9M5 508 aaPredicted RBP7.68□□□□□ -1.18
VPS35-205ENST00000563984 GALNT11Q8NCW6 608 aa7.68□□□□□ -1.18
VPS35-205ENST00000563984 FAM129BQ96TA1 746 aa7.68□□□□□ -1.18
VPS35-205ENST00000563984 OSMRQ99650 979 aa7.68□□□□□ -1.18
VPS35-205ENST00000563984 CABP4P57796 275 aa7.67□□□□□ -1.18
VPS35-205ENST00000563984 MRPL18Q9H0U6 180 aaKnown RBP7.67□□□□□ -1.18
VPS35-205ENST00000563984 SH2B1Q9NRF2 756 aaPredicted RBP7.67□□□□□ -1.18
VPS35-205ENST00000563984 TRPA1O75762 1119 aa7.66□□□□□ -1.18
VPS35-205ENST00000563984 WISP1O95388 367 aa7.66□□□□□ -1.18
VPS35-205ENST00000563984 WNT11O96014 354 aa7.66□□□□□ -1.18
VPS35-205ENST00000563984 GLB1P16278 677 aa7.66□□□□□ -1.18
VPS35-205ENST00000563984 EPHA1P21709 976 aa7.66□□□□□ -1.18
VPS35-205ENST00000563984 KLHL23Q8NBE8 558 aa7.66□□□□□ -1.18
VPS35-205ENST00000563984 NXPE3Q969Y0 559 aa7.66□□□□□ -1.18
VPS35-205ENST00000563984 ZKSCAN3Q9BRR0 538 aa7.66□□□□□ -1.18
VPS35-205ENST00000563984 KCNK4Q9NYG8 393 aa7.66□□□□□ -1.18
VPS35-205ENST00000563984 STOML1Q9UBI4 398 aa7.66□□□□□ -1.18
VPS35-205ENST00000563984 PRR19A6NJB7 356 aa7.65□□□□□ -1.18
VPS35-205ENST00000563984 H3BRJ5 948 aa7.65□□□□□ -1.18
VPS35-205ENST00000563984 FSCN2O14926 492 aa7.65□□□□□ -1.18
VPS35-205ENST00000563984 PDIA4P13667 645 aaKnown RBP7.65□□□□□ -1.18
VPS35-205ENST00000563984 KCNA1Q09470 495 aa7.65□□□□□ -1.18
VPS35-205ENST00000563984 UBE2Q2Q8WVN8 375 aa7.65□□□□□ -1.18
VPS35-205ENST00000563984 WNT8BQ93098 351 aa7.65□□□□□ -1.18
VPS35-205ENST00000563984 DMRTB1Q96MA1 342 aa7.65□□□□□ -1.18
VPS35-205ENST00000563984 TRAIPQ9BWF2 469 aa7.65□□□□□ -1.18
VPS35-205ENST00000563984 RBCK1Q9BYM8 510 aa7.65□□□□□ -1.18
VPS35-205ENST00000563984 DDX3YO15523 660 aaKnown RBP7.64□□□□□ -1.19
VPS35-205ENST00000563984 CD68P34810 354 aaPredicted RBP7.64□□□□□ -1.19
VPS35-205ENST00000563984 PIP4K2BP78356 416 aa7.64□□□□□ -1.19
VPS35-205ENST00000563984 PEAR1Q5VY43 1037 aaPredicted RBP7.64□□□□□ -1.19
VPS35-205ENST00000563984 ACAD11Q709F0 780 aa7.64□□□□□ -1.19
VPS35-205ENST00000563984 GALNT12Q8IXK2 581 aa7.64□□□□□ -1.19
VPS35-205ENST00000563984 TMC1Q8TDI8 760 aa7.64□□□□□ -1.19
VPS35-205ENST00000563984 BSNDQ8WZ55 320 aa7.64□□□□□ -1.19
VPS35-205ENST00000563984 BHLHE41Q9C0J9 482 aaPredicted RBP7.64□□□□□ -1.19
VPS35-205ENST00000563984 OSGEPQ9NPF4 335 aa7.64□□□□□ -1.19
VPS35-205ENST00000563984 SOX13Q9UN79 622 aa7.64□□□□□ -1.19
VPS35-205ENST00000563984 PATL2C9JE40 543 aaKnown RBP7.63□□□□□ -1.19
VPS35-205ENST00000563984 CPNE3O75131 537 aaKnown RBP7.63□□□□□ -1.19
VPS35-205ENST00000563984 IGHA2P01877 340 aa7.63□□□□□ -1.19
VPS35-205ENST00000563984 GRIK1P39086 918 aa7.63□□□□□ -1.19
VPS35-205ENST00000563984 ZC3HAV1Q7Z2W4 902 aaKnown RBP7.63□□□□□ -1.19
VPS35-205ENST00000563984 POU5F2Q8N7G0 328 aa7.63□□□□□ -1.19
VPS35-205ENST00000563984 ALKBH8Q96BT7 664 aaKnown RBP7.63□□□□□ -1.19
VPS35-205ENST00000563984 HHIPQ96QV1 700 aa7.63□□□□□ -1.19
VPS35-205ENST00000563984 UBL7Q96S82 380 aaPredicted RBP7.63□□□□□ -1.19
VPS35-205ENST00000563984 DNAJC25Q9H1X3 360 aa7.63□□□□□ -1.19
VPS35-205ENST00000563984 SEC31BQ9NQW1 1179 aa7.63□□□□□ -1.19
VPS35-205ENST00000563984 BIN2Q9UBW5 565 aaPredicted RBP7.63□□□□□ -1.19
VPS35-205ENST00000563984 TM4SF5O14894 197 aa7.62□□□□□ -1.19
VPS35-205ENST00000563984 NFIAQ12857 509 aa7.62□□□□□ -1.19
VPS35-205ENST00000563984 LATS2Q9NRM7 1088 aa7.62□□□□□ -1.19
VPS35-205ENST00000563984 DCTN4Q9UJW0 460 aa7.62□□□□□ -1.19
VPS35-205ENST00000563984 GPR182O15218 404 aa7.61□□□□□ -1.19
VPS35-205ENST00000563984 POLR3DP05423 398 aaPredicted RBP7.61□□□□□ -1.19
VPS35-205ENST00000563984 ARL4DP49703 201 aa7.61□□□□□ -1.19
VPS35-205ENST00000563984 ARMC10Q8N2F6 343 aa7.61□□□□□ -1.19
VPS35-205ENST00000563984 UBASH3BQ8TF42 649 aa7.61□□□□□ -1.19
VPS35-205ENST00000563984 NIF3L1Q9GZT8 377 aa7.61□□□□□ -1.19
VPS35-205ENST00000563984 IVNS1ABPQ9Y6Y0 642 aa7.61□□□□□ -1.19
VPS35-205ENST00000563984 A0A1W2PP55 124 aa7.6□□□□□ -1.19
VPS35-205ENST00000563984 ORC1Q13415 861 aa7.6□□□□□ -1.19
VPS35-205ENST00000563984 KIAA0319Q5VV43 1072 aa7.6□□□□□ -1.19
VPS35-205ENST00000563984 ASAP3Q8TDY4 903 aa7.6□□□□□ -1.19
VPS35-205ENST00000563984 KLHDC7BQ96G42 594 aa7.6□□□□□ -1.19
VPS35-205ENST00000563984 EIF1AYO14602 144 aaKnown RBP7.59□□□□□ -1.19
VPS35-205ENST00000563984 EIF4EBP3O60516 100 aaPredicted RBP7.59□□□□□ -1.19
VPS35-205ENST00000563984 ADAM11O75078 769 aa7.59□□□□□ -1.19
VPS35-205ENST00000563984 C19orf57Q0VDD7 668 aa7.59□□□□□ -1.19
VPS35-205ENST00000563984 DUOXA2Q1HG44 320 aa7.59□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms