RNA–Protein interactions for RNA: ENST00000563884.1

VPS35-204, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 759 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-204ENST00000563884 BCS1LQ9Y276 419 aa8.31□□□□□ -1.08
VPS35-204ENST00000563884 MROH1Q8NDA8 1641 aa8.31□□□□□ -1.08
VPS35-204ENST00000563884 SIPA1L2Q9P2F8 1722 aaPredicted RBP8.31□□□□□ -1.08
VPS35-204ENST00000563884 NCOA2Q15596 1464 aa8.31□□□□□ -1.08
VPS35-204ENST00000563884 CEP152O94986 1710 aa8.3□□□□□ -1.08
VPS35-204ENST00000563884 A0A0A0MRY4 1105 aa8.3□□□□□ -1.08
VPS35-204ENST00000563884 C9orf172C9J069 976 aa8.3□□□□□ -1.08
VPS35-204ENST00000563884 RGS9O75916 674 aaPredicted RBP8.3□□□□□ -1.08
VPS35-204ENST00000563884 ZMYM1Q5SVZ6 1142 aa8.3□□□□□ -1.08
VPS35-204ENST00000563884 ARXQ96QS3 562 aa8.3□□□□□ -1.08
VPS35-204ENST00000563884 DMGDHQ9UI17 866 aaKnown RBP8.3□□□□□ -1.08
VPS35-204ENST00000563884 NCOA3Q9Y6Q9 1424 aa8.29□□□□□ -1.08
VPS35-204ENST00000563884 MARF1Q9Y4F3 1742 aaKnown RBP8.29□□□□□ -1.08
VPS35-204ENST00000563884 IDH3AP50213 366 aa8.29□□□□□ -1.08
VPS35-204ENST00000563884 SF3B2Q13435 895 aaKnown RBP8.29□□□□□ -1.08
VPS35-204ENST00000563884 DGKZQ13574 1117 aa8.29□□□□□ -1.08
VPS35-204ENST00000563884 NKAPLQ5M9Q1 402 aa8.29□□□□□ -1.08
VPS35-204ENST00000563884 KRT25Q7Z3Z0 450 aa8.29□□□□□ -1.08
VPS35-204ENST00000563884 TXNDC2Q86VQ3 553 aa8.29□□□□□ -1.08
VPS35-204ENST00000563884 DHX29Q7Z478 1369 aaKnown RBP8.29□□□□□ -1.08
VPS35-204ENST00000563884 CHD4Q14839 1912 aa8.29□□□□□ -1.08
VPS35-204ENST00000563884 PIK3C2BO00750 1634 aa8.29□□□□□ -1.08
VPS35-204ENST00000563884 EIF2AK4Q9P2K8 1649 aaKnown RBP8.29□□□□□ -1.08
VPS35-204ENST00000563884 ELNP15502 786 aa8.28□□□□□ -1.08
VPS35-204ENST00000563884 AFF1P51825 1210 aaKnown RBP8.28□□□□□ -1.08
VPS35-204ENST00000563884 FAM35AQ86V20 835 aa8.28□□□□□ -1.08
VPS35-204ENST00000563884 C8orf37Q96NL8 207 aa8.28□□□□□ -1.08
VPS35-204ENST00000563884 NAGPAQ9UK23 515 aa8.28□□□□□ -1.08
VPS35-204ENST00000563884 TNKS1BP1Q9C0C2 1729 aaKnown RBP8.27□□□□□ -1.09
VPS35-204ENST00000563884 KIF3BO15066 747 aa8.27□□□□□ -1.09
VPS35-204ENST00000563884 DYRK3O43781 588 aa8.27□□□□□ -1.09
VPS35-204ENST00000563884 CPB1P15086 417 aa8.27□□□□□ -1.09
VPS35-204ENST00000563884 INPP5BP32019 993 aa8.27□□□□□ -1.09
VPS35-204ENST00000563884 ARSDP51689 593 aa8.27□□□□□ -1.09
VPS35-204ENST00000563884 PCSK7Q16549 785 aa8.27□□□□□ -1.09
VPS35-204ENST00000563884 DMRTC2Q8IXT2 367 aaPredicted RBP8.27□□□□□ -1.09
VPS35-204ENST00000563884 SETD5Q9C0A6 1442 aa8.27□□□□□ -1.09
VPS35-204ENST00000563884 TET3O43151 1660 aa8.27□□□□□ -1.09
VPS35-204ENST00000563884 BRWD3Q6RI45 1802 aa8.26□□□□□ -1.09
VPS35-204ENST00000563884 FOXO3O43524 673 aa8.26□□□□□ -1.09
VPS35-204ENST00000563884 SELPP16109 830 aa8.26□□□□□ -1.09
VPS35-204ENST00000563884 HNRNPMP52272 730 aaKnown RBP eCLIP8.26□□□□□ -1.09
VPS35-204ENST00000563884 FAM200AQ8TCP9 573 aa8.26□□□□□ -1.09
VPS35-204ENST00000563884 TRPC5Q9UL62 973 aaPredicted RBP8.26□□□□□ -1.09
VPS35-204ENST00000563884 EFCAB6Q5THR3 1501 aa8.25□□□□□ -1.09
VPS35-204ENST00000563884 SCO2A0A1W2PP80 73 aa8.25□□□□□ -1.09
VPS35-204ENST00000563884 MICAL2O94851 1124 aa8.25□□□□□ -1.09
VPS35-204ENST00000563884 RFX1P22670 979 aa8.25□□□□□ -1.09
VPS35-204ENST00000563884 GRNP28799 593 aaKnown RBP8.25□□□□□ -1.09
VPS35-204ENST00000563884 WEE1P30291 646 aa8.25□□□□□ -1.09
VPS35-204ENST00000563884 NRG1Q02297 640 aaPredicted RBP8.25□□□□□ -1.09
VPS35-204ENST00000563884 ELOAQ14241 798 aaKnown RBP8.25□□□□□ -1.09
VPS35-204ENST00000563884 ADGRE1Q14246 886 aa8.25□□□□□ -1.09
VPS35-204ENST00000563884 MBTPS1Q14703 1052 aa8.25□□□□□ -1.09
VPS35-204ENST00000563884 C11orf91Q3C1V1 193 aa8.25□□□□□ -1.09
VPS35-204ENST00000563884 SHISA2Q6UWI4 295 aa8.25□□□□□ -1.09
VPS35-204ENST00000563884 DHX32Q7L7V1 743 aaKnown RBP8.25□□□□□ -1.09
VPS35-204ENST00000563884 UTP3Q9NQZ2 479 aaKnown RBP eCLIP8.25□□□□□ -1.09
VPS35-204ENST00000563884 SERPINA10Q9UK55 444 aa8.25□□□□□ -1.09
VPS35-204ENST00000563884 USP21Q9UK80 565 aa8.25□□□□□ -1.09
VPS35-204ENST00000563884 RGPD1P0DJD0 1748 aa8.25□□□□□ -1.09
VPS35-204ENST00000563884 BCL9LQ86UU0 1499 aa8.25□□□□□ -1.09
VPS35-204ENST00000563884 ASXL1Q8IXJ9 1541 aa8.24□□□□□ -1.09
VPS35-204ENST00000563884 SASH3O75995 380 aa8.24□□□□□ -1.09
VPS35-204ENST00000563884 MAP3K6O95382 1288 aa8.24□□□□□ -1.09
VPS35-204ENST00000563884 RARAP10276 462 aa8.24□□□□□ -1.09
VPS35-204ENST00000563884 TARSP26639 723 aaKnown RBP8.24□□□□□ -1.09
VPS35-204ENST00000563884 LTKP29376 864 aa8.24□□□□□ -1.09
VPS35-204ENST00000563884 MLLT1Q03111 559 aaPredicted RBP8.24□□□□□ -1.09
VPS35-204ENST00000563884 CDCA8Q53HL2 280 aa8.24□□□□□ -1.09
VPS35-204ENST00000563884 ELMSAN1Q6PJG2 1045 aa8.24□□□□□ -1.09
VPS35-204ENST00000563884 TXNRD3Q86VQ6 643 aa8.24□□□□□ -1.09
VPS35-204ENST00000563884 FMR1NBQ8N0W7 255 aaPredicted RBP8.24□□□□□ -1.09
VPS35-204ENST00000563884 LENG1Q96BZ8 264 aaPredicted RBP8.24□□□□□ -1.09
VPS35-204ENST00000563884 ZFATQ9P243 1243 aa8.24□□□□□ -1.09
VPS35-204ENST00000563884 TMEM2Q9UHN6 1383 aa8.23□□□□□ -1.09
VPS35-204ENST00000563884 MAST1Q9Y2H9 1570 aa8.23□□□□□ -1.09
VPS35-204ENST00000563884 ATRNO75882 1429 aa8.23□□□□□ -1.09
VPS35-204ENST00000563884 EEA1Q15075 1411 aa8.23□□□□□ -1.09
VPS35-204ENST00000563884 ATF3P18847 181 aa8.23□□□□□ -1.09
VPS35-204ENST00000563884 MSL1Q68DK7 614 aa8.23□□□□□ -1.09
VPS35-204ENST00000563884 C14orf37Q86TY3 774 aa8.23□□□□□ -1.09
VPS35-204ENST00000563884 IFT43Q96FT9 208 aa8.23□□□□□ -1.09
VPS35-204ENST00000563884 PTCH1Q13635 1447 aa8.22□□□□□ -1.09
VPS35-204ENST00000563884 ARID4AP29374 1257 aaPredicted RBP8.22□□□□□ -1.09
VPS35-204ENST00000563884 PERM1Q5SV97 790 aa8.22□□□□□ -1.09
VPS35-204ENST00000563884 TRPM4Q8TD43 1214 aa8.22□□□□□ -1.09
VPS35-204ENST00000563884 LRRC59Q96AG4 307 aaKnown RBP8.22□□□□□ -1.09
VPS35-204ENST00000563884 MYO19Q96H55 970 aa8.22□□□□□ -1.09
VPS35-204ENST00000563884 LPIN3Q9BQK8 851 aa8.22□□□□□ -1.09
VPS35-204ENST00000563884 DCCP43146 1447 aa8.21□□□□□ -1.09
VPS35-204ENST00000563884 ZBTB42B2RXF5 422 aa8.21□□□□□ -1.1
VPS35-204ENST00000563884 ATG7O95352 703 aa8.21□□□□□ -1.1
VPS35-204ENST00000563884 PRSS36Q5K4E3 855 aa8.21□□□□□ -1.1
VPS35-204ENST00000563884 WFDC8Q8IUA0 241 aa8.21□□□□□ -1.1
VPS35-204ENST00000563884 C1orf115Q9H7X2 142 aa8.21□□□□□ -1.1
VPS35-204ENST00000563884 C11orf16Q9NQ32 467 aa8.21□□□□□ -1.1
VPS35-204ENST00000563884 FRRS1LQ9P0K9 344 aa8.21□□□□□ -1.1
VPS35-204ENST00000563884 CFDP1Q9UEE9 299 aaPredicted RBP8.21□□□□□ -1.1
VPS35-204ENST00000563884 USP20Q9Y2K6 914 aa8.21□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms