RNA–Protein interactions for RNA: ENST00000563455.1

SMPD3-205, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 4

Gene SMPD3, Length 546 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-205ENST00000563455 KCNB2Q92953 911 aa16.64■□□□□ 0.25
SMPD3-205ENST00000563455 CCDC85AQ96PX6 553 aaPredicted RBP16.64■□□□□ 0.25
SMPD3-205ENST00000563455 DNAJC2Q99543 621 aaKnown RBP16.64■□□□□ 0.25
SMPD3-205ENST00000563455 CCDC171Q6TFL3 1326 aa16.64■□□□□ 0.25
SMPD3-205ENST00000563455 RNF113AO15541 343 aaKnown RBP16.63■□□□□ 0.25
SMPD3-205ENST00000563455 NMIQ13287 307 aaPredicted RBP16.63■□□□□ 0.25
SMPD3-205ENST00000563455 TSGA10IPQ3SY00 556 aa16.63■□□□□ 0.25
SMPD3-205ENST00000563455 RPGRQ92834 1020 aaKnown RBP16.63■□□□□ 0.25
SMPD3-205ENST00000563455 TNRC6CQ9HCJ0 1690 aaKnown RBP16.62■□□□□ 0.25
SMPD3-205ENST00000563455 SEMA3EO15041 775 aa16.62■□□□□ 0.25
SMPD3-205ENST00000563455 CHADLQ6NUI6 762 aa16.62■□□□□ 0.25
SMPD3-205ENST00000563455 JDP2Q8WYK2 163 aa16.62■□□□□ 0.25
SMPD3-205ENST00000563455 CWC22Q9HCG8 908 aaKnown RBP16.62■□□□□ 0.25
SMPD3-205ENST00000563455 U3KPZ7 1027 aaPredicted RBP16.62■□□□□ 0.25
SMPD3-205ENST00000563455 MED23Q9ULK4 1368 aa16.62■□□□□ 0.25
SMPD3-205ENST00000563455 DLEC1Q9Y238 1755 aa16.61■□□□□ 0.25
SMPD3-205ENST00000563455 AK9Q5TCS8 1911 aa16.61■□□□□ 0.25
SMPD3-205ENST00000563455 POTECB2RU33 542 aa16.61■□□□□ 0.25
SMPD3-205ENST00000563455 GOLIM4O00461 696 aa16.61■□□□□ 0.25
SMPD3-205ENST00000563455 DDNO94850 711 aaPredicted RBP16.61■□□□□ 0.25
SMPD3-205ENST00000563455 HSP90AA1P07900 732 aaKnown RBP16.61■□□□□ 0.25
SMPD3-205ENST00000563455 KCNJ4P48050 445 aa16.61■□□□□ 0.25
SMPD3-205ENST00000563455 CRY2Q49AN0 593 aa16.61■□□□□ 0.25
SMPD3-205ENST00000563455 CAVIN4Q5BKX8 364 aa16.61■□□□□ 0.25
SMPD3-205ENST00000563455 ZMYM1Q5SVZ6 1142 aa16.61■□□□□ 0.25
SMPD3-205ENST00000563455 RBM17Q96I25 401 aaKnown RBP16.61■□□□□ 0.25
SMPD3-205ENST00000563455 SBF1O95248 1867 aa16.61■□□□□ 0.25
SMPD3-205ENST00000563455 CHRNDQ07001 517 aa16.6■□□□□ 0.25
SMPD3-205ENST00000563455 CCDC102BQ68D86 513 aa16.6■□□□□ 0.25
SMPD3-205ENST00000563455 PNMA8AQ86V59 439 aaPredicted RBP16.6■□□□□ 0.25
SMPD3-205ENST00000563455 DSCC1Q9BVC3 393 aa16.6■□□□□ 0.25
SMPD3-205ENST00000563455 SEC31BQ9NQW1 1179 aa16.6■□□□□ 0.25
SMPD3-205ENST00000563455 CTNNA3Q9UI47 895 aa16.6■□□□□ 0.25
SMPD3-205ENST00000563455 PDS5AQ29RF7 1337 aaKnown RBP16.6■□□□□ 0.25
SMPD3-205ENST00000563455 BBOX1O75936 387 aa16.59■□□□□ 0.25
SMPD3-205ENST00000563455 HMGB1P09429 215 aaKnown RBP16.59■□□□□ 0.25
SMPD3-205ENST00000563455 PDIA4P13667 645 aaKnown RBP16.59■□□□□ 0.25
SMPD3-205ENST00000563455 HOXA10P31260 410 aaPredicted RBP16.59■□□□□ 0.25
SMPD3-205ENST00000563455 NECTIN1Q15223 517 aa16.59■□□□□ 0.25
SMPD3-205ENST00000563455 UBE3CQ15386 1083 aa16.59■□□□□ 0.25
SMPD3-205ENST00000563455 CHMP4CQ96CF2 233 aa16.59■□□□□ 0.25
SMPD3-205ENST00000563455 L3MBTL3Q96JM7 780 aaPredicted RBP16.59■□□□□ 0.25
SMPD3-205ENST00000563455 PSMD1Q99460 953 aa16.59■□□□□ 0.25
SMPD3-205ENST00000563455 CHMP5Q9NZZ3 219 aa16.59■□□□□ 0.25
SMPD3-205ENST00000563455 DDX60Q8IY21 1712 aaKnown RBP16.59■□□□□ 0.25
SMPD3-205ENST00000563455 TAF5LO75529 589 aa16.58■□□□□ 0.24
SMPD3-205ENST00000563455 IARSP41252 1262 aaKnown RBP16.58■□□□□ 0.24
SMPD3-205ENST00000563455 NEK4P51957 841 aa16.58■□□□□ 0.24
SMPD3-205ENST00000563455 HTRA3P83110 453 aa16.58■□□□□ 0.24
SMPD3-205ENST00000563455 ANKRD1Q15327 319 aa16.58■□□□□ 0.24
SMPD3-205ENST00000563455 LDHDQ86WU2 507 aa16.58■□□□□ 0.24
SMPD3-205ENST00000563455 APPBP2Q92624 585 aa16.58■□□□□ 0.24
SMPD3-205ENST00000563455 CRAMP1Q96RY5 1269 aa16.58■□□□□ 0.24
SMPD3-205ENST00000563455 ALDH8A1Q9H2A2 487 aaPredicted RBP16.58■□□□□ 0.24
SMPD3-205ENST00000563455 MINPP1Q9UNW1 487 aa16.58■□□□□ 0.24
SMPD3-205ENST00000563455 LEMD3Q9Y2U8 911 aa16.58■□□□□ 0.24
SMPD3-205ENST00000563455 A0A0D9SFI3 127 aa16.57■□□□□ 0.24
SMPD3-205ENST00000563455 EIF6P56537 245 aaKnown RBP16.57■□□□□ 0.24
SMPD3-205ENST00000563455 MAP3K12Q12852 859 aa16.57■□□□□ 0.24
SMPD3-205ENST00000563455 GRAPQ13588 217 aa16.57■□□□□ 0.24
SMPD3-205ENST00000563455 GRAPLQ8TC17 118 aaPredicted RBP16.57■□□□□ 0.24
SMPD3-205ENST00000563455 INTS4Q96HW7 963 aaKnown RBP16.57■□□□□ 0.24
SMPD3-205ENST00000563455 FAM227BQ96M60 508 aa16.57■□□□□ 0.24
SMPD3-205ENST00000563455 VPS33BQ9H267 617 aa16.57■□□□□ 0.24
SMPD3-205ENST00000563455 ZNF277Q9NRM2 450 aaPredicted RBP16.57■□□□□ 0.24
SMPD3-205ENST00000563455 CREBZFQ9NS37 354 aa16.57■□□□□ 0.24
SMPD3-205ENST00000563455 HACL1Q9UJ83 578 aa16.57■□□□□ 0.24
SMPD3-205ENST00000563455 ADORA1P30542 326 aa16.56■□□□□ 0.24
SMPD3-205ENST00000563455 GPC2Q8N158 579 aa16.56■□□□□ 0.24
SMPD3-205ENST00000563455 SPATA5Q8NB90 893 aa16.56■□□□□ 0.24
SMPD3-205ENST00000563455 ZSCAN31Q96LW9 406 aaPredicted RBP16.56■□□□□ 0.24
SMPD3-205ENST00000563455 DENND2AQ9ULE3 1009 aa16.56■□□□□ 0.24
SMPD3-205ENST00000563455 RBM8AQ9Y5S9 174 aaKnown RBP16.56■□□□□ 0.24
SMPD3-205ENST00000563455 SNX14Q9Y5W7 946 aa16.56■□□□□ 0.24
SMPD3-205ENST00000563455 CYP46A1Q9Y6A2 500 aa16.56■□□□□ 0.24
SMPD3-205ENST00000563455 ANKRD31Q8N7Z5 1873 aa16.55■□□□□ 0.24
SMPD3-205ENST00000563455 ZNF804BA4D1E1 1349 aa16.55■□□□□ 0.24
SMPD3-205ENST00000563455 FZD9O00144 591 aa16.55■□□□□ 0.24
SMPD3-205ENST00000563455 SLC4A3P48751 1232 aa16.55■□□□□ 0.24
SMPD3-205ENST00000563455 VPS53Q5VIR6 699 aa16.55■□□□□ 0.24
SMPD3-205ENST00000563455 TAF1DQ9H5J8 278 aaPredicted RBP16.55■□□□□ 0.24
SMPD3-205ENST00000563455 CLEC11AQ9Y240 323 aa16.55■□□□□ 0.24
SMPD3-205ENST00000563455 WDR90Q96KV7 1748 aa16.54■□□□□ 0.24
SMPD3-205ENST00000563455 MCAMP43121 646 aa16.54■□□□□ 0.24
SMPD3-205ENST00000563455 ZAP70P43403 619 aa16.54■□□□□ 0.24
SMPD3-205ENST00000563455 CREB3L3Q68CJ9 461 aa16.54■□□□□ 0.24
SMPD3-205ENST00000563455 C15orf52Q6ZUT6 534 aaKnown RBP16.54■□□□□ 0.24
SMPD3-205ENST00000563455 VPS37DQ86XT2 251 aa16.54■□□□□ 0.24
SMPD3-205ENST00000563455 SUPT20HQ8NEM7 779 aa16.54■□□□□ 0.24
SMPD3-205ENST00000563455 ANTXR1Q9H6X2 564 aa16.54■□□□□ 0.24
SMPD3-205ENST00000563455 ZSWIM6Q9HCJ5 1215 aa16.54■□□□□ 0.24
SMPD3-205ENST00000563455 RPAP1Q9BWH6 1393 aaPredicted RBP16.53■□□□□ 0.24
SMPD3-205ENST00000563455 GNAT2P19087 354 aa16.53■□□□□ 0.24
SMPD3-205ENST00000563455 LMOD1P29536 600 aaPredicted RBP16.53■□□□□ 0.24
SMPD3-205ENST00000563455 EPHX2P34913 555 aa16.53■□□□□ 0.24
SMPD3-205ENST00000563455 PTH1RQ03431 593 aa16.53■□□□□ 0.24
SMPD3-205ENST00000563455 EAPPQ56P03 285 aaPredicted RBP16.53■□□□□ 0.24
SMPD3-205ENST00000563455 ZGPATQ8N5A5 531 aaKnown RBP16.53■□□□□ 0.24
SMPD3-205ENST00000563455 ANP32EQ9BTT0 268 aa16.53■□□□□ 0.24
SMPD3-205ENST00000563455 XDHP47989 1333 aa16.52■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms