RNA–Protein interactions for RNA: ENST00000563448.1

SMG1-208, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 2

Gene SMG1, Length 2,016 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-208ENST00000563448 PPP1R1BQ9UD71 204 aaPredicted RBP12.3□□□□□ -0.44
SMG1-208ENST00000563448 DENND2AQ9ULE3 1009 aa12.3□□□□□ -0.44
SMG1-208ENST00000563448 A0A0D9SFI3 127 aa12.29□□□□□ -0.44
SMG1-208ENST00000563448 C21orf2O43822 256 aa12.29□□□□□ -0.44
SMG1-208ENST00000563448 SLFNL1Q499Z3 407 aa12.29□□□□□ -0.44
SMG1-208ENST00000563448 ZNF804AQ7Z570 1209 aa12.29□□□□□ -0.44
SMG1-208ENST00000563448 TICAM2Q86XR7 235 aa12.29□□□□□ -0.44
SMG1-208ENST00000563448 KLHL34Q8N239 644 aa12.29□□□□□ -0.44
SMG1-208ENST00000563448 TDRD7Q8NHU6 1098 aaKnown RBP12.29□□□□□ -0.44
SMG1-208ENST00000563448 PIM2Q9P1W9 311 aa12.29□□□□□ -0.44
SMG1-208ENST00000563448 RNF113AO15541 343 aaKnown RBP12.28□□□□□ -0.44
SMG1-208ENST00000563448 CC2D2BQ6DHV5 1058 aa12.28□□□□□ -0.44
SMG1-208ENST00000563448 RUFY2Q8WXA3 655 aa12.28□□□□□ -0.44
SMG1-208ENST00000563448 CD209Q9NNX6 404 aa12.28□□□□□ -0.44
SMG1-208ENST00000563448 PDS5AQ29RF7 1337 aaKnown RBP12.28□□□□□ -0.44
SMG1-208ENST00000563448 RIMBP2O15034 1052 aa12.28□□□□□ -0.44
SMG1-208ENST00000563448 EIF5BO60841 1220 aaKnown RBP12.28□□□□□ -0.44
SMG1-208ENST00000563448 USP26Q9BXU7 913 aa12.28□□□□□ -0.44
SMG1-208ENST00000563448 RTFDC1Q9BY42 306 aaPredicted RBP12.28□□□□□ -0.44
SMG1-208ENST00000563448 UPF2Q9HAU5 1272 aaKnown RBP12.28□□□□□ -0.44
SMG1-208ENST00000563448 FRAT2O75474 233 aaPredicted RBP12.27□□□□□ -0.44
SMG1-208ENST00000563448 IL1R1P14778 569 aa12.27□□□□□ -0.44
SMG1-208ENST00000563448 ZMYM1Q5SVZ6 1142 aa12.27□□□□□ -0.44
SMG1-208ENST00000563448 SEC62Q99442 399 aaKnown RBP12.27□□□□□ -0.44
SMG1-208ENST00000563448 C22orf23Q9BZE7 217 aa12.27□□□□□ -0.44
SMG1-208ENST00000563448 WWC3Q9ULE0 1092 aa12.27□□□□□ -0.44
SMG1-208ENST00000563448 CDK5RAP2Q96SN8 1893 aa12.27□□□□□ -0.45
SMG1-208ENST00000563448 RAD50Q92878 1312 aa12.27□□□□□ -0.45
SMG1-208ENST00000563448 IDH1O75874 414 aaKnown RBP12.27□□□□□ -0.45
SMG1-208ENST00000563448 REC8O95072 547 aa12.27□□□□□ -0.45
SMG1-208ENST00000563448 ADD2P35612 726 aa12.27□□□□□ -0.45
SMG1-208ENST00000563448 WASHC4Q2M389 1173 aa12.27□□□□□ -0.45
SMG1-208ENST00000563448 TBC1D32Q96NH3 1257 aa12.27□□□□□ -0.45
SMG1-208ENST00000563448 EYA3Q99504 573 aa12.27□□□□□ -0.45
SMG1-208ENST00000563448 ZC3H12CQ9C0D7 883 aaKnown RBP12.27□□□□□ -0.45
SMG1-208ENST00000563448 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.27□□□□□ -0.459e-7■■□□□ 13.1
SMG1-208ENST00000563448 ZFYP08048 801 aaPredicted RBP12.26□□□□□ -0.45
SMG1-208ENST00000563448 CHAF1AQ13111 956 aaPredicted RBP12.26□□□□□ -0.45
SMG1-208ENST00000563448 LRRFIP1Q32MZ4 808 aaKnown RBP12.26□□□□□ -0.45
SMG1-208ENST00000563448 MCMDC2Q4G0Z9 681 aa12.26□□□□□ -0.45
SMG1-208ENST00000563448 CCDC93Q567U6 631 aa12.26□□□□□ -0.45
SMG1-208ENST00000563448 DALRD3Q5D0E6 543 aaKnown RBP12.26□□□□□ -0.45
SMG1-208ENST00000563448 ZNF589Q86UQ0 364 aaPredicted RBP12.26□□□□□ -0.45
SMG1-208ENST00000563448 NLGN2Q8NFZ4 835 aa12.26□□□□□ -0.45
SMG1-208ENST00000563448 LSG1Q9H089 658 aaKnown RBP12.26□□□□□ -0.45
SMG1-208ENST00000563448 HELLSQ9NRZ9 838 aa12.26□□□□□ -0.45
SMG1-208ENST00000563448 JAG2Q9Y219 1238 aa12.26□□□□□ -0.45
SMG1-208ENST00000563448 LAMA4Q16363 1823 aa12.26□□□□□ -0.45
SMG1-208ENST00000563448 TCRBV5S4A2TA0A5A2 114 aa12.25□□□□□ -0.45
SMG1-208ENST00000563448 PDE6AP16499 860 aa12.25□□□□□ -0.45
SMG1-208ENST00000563448 GRIPAP1Q4V328 841 aa12.25□□□□□ -0.45
SMG1-208ENST00000563448 SLC9C2Q5TAH2 1124 aa12.25□□□□□ -0.45
SMG1-208ENST00000563448 ZSCAN25Q6NSZ9 544 aa12.25□□□□□ -0.45
SMG1-208ENST00000563448 CCDC129Q6ZRS4 1044 aa12.25□□□□□ -0.45
SMG1-208ENST00000563448 COA1Q9GZY4 146 aa12.25□□□□□ -0.45
SMG1-208ENST00000563448 ANO2Q9NQ90 1003 aa12.25□□□□□ -0.45
SMG1-208ENST00000563448 ABCF2Q9UG63 623 aa12.25□□□□□ -0.45
SMG1-208ENST00000563448 M0R2C6 588 aa12.25□□□□□ -0.45
SMG1-208ENST00000563448 RBM25P49756 843 aaKnown RBP12.25□□□□□ -0.45
SMG1-208ENST00000563448 MAP3K12Q12852 859 aa12.25□□□□□ -0.45
SMG1-208ENST00000563448 UBE3CQ15386 1083 aa12.25□□□□□ -0.45
SMG1-208ENST00000563448 DOK7Q18PE1 504 aa12.25□□□□□ -0.45
SMG1-208ENST00000563448 RTKN2Q8IZC4 609 aa12.25□□□□□ -0.45
SMG1-208ENST00000563448 OSBP2Q969R2 916 aa12.25□□□□□ -0.45
SMG1-208ENST00000563448 LRP2BPQ9P2M1 347 aa12.25□□□□□ -0.45
SMG1-208ENST00000563448 SBF1O95248 1867 aa12.25□□□□□ -0.45
SMG1-208ENST00000563448 MAST3O60307 1309 aa12.24□□□□□ -0.45
SMG1-208ENST00000563448 ZNF532Q9HCE3 1301 aa12.24□□□□□ -0.45
SMG1-208ENST00000563448 SALL1Q9NSC2 1324 aa12.24□□□□□ -0.45
SMG1-208ENST00000563448 DICER1Q9UPY3 1922 aaKnown RBP12.24□□□□□ -0.45
SMG1-208ENST00000563448 PTH1RQ03431 593 aa12.24□□□□□ -0.45
SMG1-208ENST00000563448 MAGEB6Q8N7X4 407 aa12.24□□□□□ -0.45
SMG1-208ENST00000563448 SUPT20HQ8NEM7 779 aa12.24□□□□□ -0.45
SMG1-208ENST00000563448 APPBP2Q92624 585 aa12.24□□□□□ -0.45
SMG1-208ENST00000563448 PSMD1Q99460 953 aa12.24□□□□□ -0.45
SMG1-208ENST00000563448 BAZ2AQ9UIF9 1905 aaKnown RBP12.24□□□□□ -0.45
SMG1-208ENST00000563448 ADAMTSL1Q8N6G6 1762 aa12.23□□□□□ -0.45
SMG1-208ENST00000563448 EPB41L2O43491 1005 aaKnown RBP12.23□□□□□ -0.45
SMG1-208ENST00000563448 AOC3Q16853 763 aa12.23□□□□□ -0.45
SMG1-208ENST00000563448 SOGA3Q5TF21 947 aa12.23□□□□□ -0.45
SMG1-208ENST00000563448 WDR66Q8TBY9 1149 aa12.23□□□□□ -0.45
SMG1-208ENST00000563448 PUS7LQ9H0K6 701 aaKnown RBP12.23□□□□□ -0.45
SMG1-208ENST00000563448 CCDC171Q6TFL3 1326 aa12.23□□□□□ -0.45
SMG1-208ENST00000563448 FAM205AQ6ZU69 1335 aa12.23□□□□□ -0.45
SMG1-208ENST00000563448 COL4A5P29400 1685 aa12.23□□□□□ -0.45
SMG1-208ENST00000563448 ECM29Q5VYK3 1845 aa12.23□□□□□ -0.45
SMG1-208ENST00000563448 KIAA2012Q0VF49 1180 aa12.23□□□□□ -0.45
SMG1-208ENST00000563448 KIAA1211Q6ZU35 1233 aa12.23□□□□□ -0.45
SMG1-208ENST00000563448 ERICH6Q7L0X2 663 aa12.23□□□□□ -0.45
SMG1-208ENST00000563448 ZNF384Q8TF68 577 aa12.23□□□□□ -0.45
SMG1-208ENST00000563448 DBNDD1Q9H9R9 158 aa12.23□□□□□ -0.45
SMG1-208ENST00000563448 RAI14Q9P0K7 980 aa12.23□□□□□ -0.45
SMG1-208ENST00000563448 FOCADQ5VW36 1801 aa12.22□□□□□ -0.45
SMG1-208ENST00000563448 PRDX5P30044 214 aa12.22□□□□□ -0.45
SMG1-208ENST00000563448 GRIK5Q16478 980 aa12.22□□□□□ -0.45
SMG1-208ENST00000563448 FHDC1Q9C0D6 1143 aaPredicted RBP12.22□□□□□ -0.45
SMG1-208ENST00000563448 BCS1LQ9Y276 419 aa12.22□□□□□ -0.45
SMG1-208ENST00000563448 G3V3G9 751 aa12.21□□□□□ -0.45
SMG1-208ENST00000563448 GTF2IP78347 998 aa12.21□□□□□ -0.45
SMG1-208ENST00000563448 MECOMQ03112 1051 aa12.21□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms