RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 HAUS7Q99871 368 aa20.24■□□□□ 0.83
VPS4A-202ENST00000562754 VPS33BQ9H267 617 aa20.24■□□□□ 0.83
VPS4A-202ENST00000562754 SNRKQ9NRH2 765 aa20.24■□□□□ 0.83
VPS4A-202ENST00000562754 MYO5AQ9Y4I1 1855 aaKnown RBP20.24■□□□□ 0.83
VPS4A-202ENST00000562754 DOCK2Q92608 1830 aa20.23■□□□□ 0.83
VPS4A-202ENST00000562754 SEMA3EO15041 775 aa20.23■□□□□ 0.83
VPS4A-202ENST00000562754 ECE2O60344 883 aa20.23■□□□□ 0.83
VPS4A-202ENST00000562754 ZAP70P43403 619 aa20.23■□□□□ 0.83
VPS4A-202ENST00000562754 TIAM2Q8IVF5 1701 aa20.23■□□□□ 0.83
VPS4A-202ENST00000562754 EDC3Q96F86 508 aaKnown RBP20.23■□□□□ 0.83
VPS4A-202ENST00000562754 YDJCA8MPS7 323 aa20.22■□□□□ 0.83
VPS4A-202ENST00000562754 MAP4K4O95819 1239 aaPredicted RBP20.22■□□□□ 0.83
VPS4A-202ENST00000562754 SPATA5Q8NB90 893 aa20.22■□□□□ 0.83
VPS4A-202ENST00000562754 DNAJC2Q99543 621 aaKnown RBP20.22■□□□□ 0.83
VPS4A-202ENST00000562754 PDS5AQ29RF7 1337 aaKnown RBP20.22■□□□□ 0.83
VPS4A-202ENST00000562754 DENND2AQ9ULE3 1009 aa20.21■□□□□ 0.83
VPS4A-202ENST00000562754 JAG2Q9Y219 1238 aa20.21■□□□□ 0.83
VPS4A-202ENST00000562754 G3V3G9 751 aa20.2■□□□□ 0.82
VPS4A-202ENST00000562754 CHAF1AQ13111 956 aaPredicted RBP20.2■□□□□ 0.82
VPS4A-202ENST00000562754 DCAF8Q5TAQ9 597 aa20.2■□□□□ 0.82
VPS4A-202ENST00000562754 PODNQ7Z5L7 613 aa20.2■□□□□ 0.82
VPS4A-202ENST00000562754 NIM1KQ8IY84 436 aa20.2■□□□□ 0.82
VPS4A-202ENST00000562754 ANTXR1Q9H6X2 564 aa20.2■□□□□ 0.82
VPS4A-202ENST00000562754 KCNQ5Q9NR82 932 aa20.2■□□□□ 0.82
VPS4A-202ENST00000562754 FAM205AQ6ZU69 1335 aa20.2■□□□□ 0.82
VPS4A-202ENST00000562754 MYH7P12883 1935 aa20.19■□□□□ 0.82
VPS4A-202ENST00000562754 GOLGB1Q14789 3259 aaKnown RBP20.19■□□□□ 0.82
VPS4A-202ENST00000562754 GOLIM4O00461 696 aa20.19■□□□□ 0.82
VPS4A-202ENST00000562754 FRAT2O75474 233 aaPredicted RBP20.19■□□□□ 0.82
VPS4A-202ENST00000562754 CYP2E1P05181 493 aaPredicted RBP20.19■□□□□ 0.82
VPS4A-202ENST00000562754 LMNB1P20700 586 aa20.19■□□□□ 0.82
VPS4A-202ENST00000562754 BMP2KLQ5H9B9 411 aa20.19■□□□□ 0.82
VPS4A-202ENST00000562754 PIH1D3Q9NQM4 214 aaKnown RBP20.19■□□□□ 0.82
VPS4A-202ENST00000562754 PAG1Q9NWQ8 432 aa20.19■□□□□ 0.82
VPS4A-202ENST00000562754 MAST2Q6P0Q8 1798 aa20.18■□□□□ 0.82
VPS4A-202ENST00000562754 GRIN3BO60391 1043 aa20.18■□□□□ 0.82
VPS4A-202ENST00000562754 ZNRF3Q9ULT6 936 aa20.18■□□□□ 0.82
VPS4A-202ENST00000562754 SDSP20132 328 aa20.17■□□□□ 0.82
VPS4A-202ENST00000562754 GTF2IP78347 998 aa20.17■□□□□ 0.82
VPS4A-202ENST00000562754 TBC1D9Q6ZT07 1266 aa20.17■□□□□ 0.82
VPS4A-202ENST00000562754 JDP2Q8WYK2 163 aa20.16■□□□□ 0.82
VPS4A-202ENST00000562754 SALL1Q9NSC2 1324 aa20.16■□□□□ 0.82
VPS4A-202ENST00000562754 TRIM6-TRIM34B2RNG4 842 aa20.15■□□□□ 0.82
VPS4A-202ENST00000562754 GRIK5Q16478 980 aa20.15■□□□□ 0.82
VPS4A-202ENST00000562754 DACT2Q5SW24 774 aa20.15■□□□□ 0.82
VPS4A-202ENST00000562754 CERS5Q8N5B7 392 aa20.15■□□□□ 0.82
VPS4A-202ENST00000562754 WDR66Q8TBY9 1149 aa20.15■□□□□ 0.82
VPS4A-202ENST00000562754 FBXW7Q969H0 707 aa20.15■□□□□ 0.82
VPS4A-202ENST00000562754 EVI5LQ96CN4 794 aa20.15■□□□□ 0.82
VPS4A-202ENST00000562754 MXD3Q9BW11 206 aa20.15■□□□□ 0.82
VPS4A-202ENST00000562754 RNF181Q9P0P0 153 aa20.15■□□□□ 0.82
VPS4A-202ENST00000562754 USP17L3A6NCW0 530 aa20.14■□□□□ 0.81
VPS4A-202ENST00000562754 USP17L4A6NCW7 530 aa20.14■□□□□ 0.81
VPS4A-202ENST00000562754 FZD9O00144 591 aa20.14■□□□□ 0.81
VPS4A-202ENST00000562754 RAD17O75943 681 aa20.14■□□□□ 0.81
VPS4A-202ENST00000562754 STRIP1Q5VSL9 837 aa20.14■□□□□ 0.81
VPS4A-202ENST00000562754 C9orf131Q5VYM1 1079 aa20.14■□□□□ 0.81
VPS4A-202ENST00000562754 TTLL5Q6EMB2 1281 aa20.14■□□□□ 0.81
VPS4A-202ENST00000562754 USP17L1Q7RTZ2 530 aa20.14■□□□□ 0.81
VPS4A-202ENST00000562754 CNTROBQ8N137 903 aa20.14■□□□□ 0.81
VPS4A-202ENST00000562754 KBTBD3Q8NAB2 608 aa20.14■□□□□ 0.81
VPS4A-202ENST00000562754 RILPL2Q969X0 211 aa20.14■□□□□ 0.81
VPS4A-202ENST00000562754 ZNF541Q9H0D2 1346 aa20.13■□□□□ 0.81
VPS4A-202ENST00000562754 PRDX5P30044 214 aa20.13■□□□□ 0.81
VPS4A-202ENST00000562754 CXCL9Q07325 125 aa20.13■□□□□ 0.81
VPS4A-202ENST00000562754 TTF1Q15361 905 aaPredicted RBP20.13■□□□□ 0.81
VPS4A-202ENST00000562754 MFSD14BQ5SR56 506 aa20.13■□□□□ 0.81
VPS4A-202ENST00000562754 ABCF2Q9UG63 623 aa20.13■□□□□ 0.81
VPS4A-202ENST00000562754 RFX7Q2KHR2 1363 aa20.12■□□□□ 0.81
VPS4A-202ENST00000562754 PSMD14O00487 310 aa20.12■□□□□ 0.81
VPS4A-202ENST00000562754 TBC1D22AQ8WUA7 517 aa20.12■□□□□ 0.81
VPS4A-202ENST00000562754 FSD1Q9BTV5 496 aa20.12■□□□□ 0.81
VPS4A-202ENST00000562754 ADAMTSL1Q8N6G6 1762 aa20.12■□□□□ 0.81
VPS4A-202ENST00000562754 IDH1O75874 414 aaKnown RBP20.11■□□□□ 0.81
VPS4A-202ENST00000562754 CHGBP05060 677 aa20.11■□□□□ 0.81
VPS4A-202ENST00000562754 FKBP1AP62942 108 aaKnown RBP20.11■□□□□ 0.81
VPS4A-202ENST00000562754 VIL1P09327 827 aaKnown RBP20.1■□□□□ 0.81
VPS4A-202ENST00000562754 CIAPIN1Q6FI81 312 aa20.1■□□□□ 0.81
VPS4A-202ENST00000562754 ZGPATQ8N5A5 531 aaKnown RBP20.1■□□□□ 0.81
VPS4A-202ENST00000562754 ZNF384Q8TF68 577 aa20.1■□□□□ 0.81
VPS4A-202ENST00000562754 LRP2BPQ9P2M1 347 aa20.1■□□□□ 0.81
VPS4A-202ENST00000562754 EIF6P56537 245 aaKnown RBP20.09■□□□□ 0.81
VPS4A-202ENST00000562754 SLFNL1Q499Z3 407 aa20.09■□□□□ 0.81
VPS4A-202ENST00000562754 RSBN1LQ6PCB5 846 aaPredicted RBP20.09■□□□□ 0.81
VPS4A-202ENST00000562754 ERICH6Q7L0X2 663 aa20.09■□□□□ 0.81
VPS4A-202ENST00000562754 RAI14Q9P0K7 980 aa20.09■□□□□ 0.81
VPS4A-202ENST00000562754 MYH2Q9UKX2 1941 aa20.08■□□□□ 0.81
VPS4A-202ENST00000562754 LDHBP07195 334 aaKnown RBP20.08■□□□□ 0.81
VPS4A-202ENST00000562754 PDE6AP16499 860 aa20.08■□□□□ 0.81
VPS4A-202ENST00000562754 SPTY2D1Q68D10 685 aaPredicted RBP20.08■□□□□ 0.81
VPS4A-202ENST00000562754 GMLQ99445 158 aa20.08■□□□□ 0.81
VPS4A-202ENST00000562754 ADD2P35612 726 aa20.07■□□□□ 0.8
VPS4A-202ENST00000562754 MECOMQ03112 1051 aa20.07■□□□□ 0.8
VPS4A-202ENST00000562754 MAP3K12Q12852 859 aa20.07■□□□□ 0.8
VPS4A-202ENST00000562754 NSUN4Q96CB9 384 aaKnown RBP20.07■□□□□ 0.8
VPS4A-202ENST00000562754 DDX24Q9GZR7 859 aaKnown RBP eCLIP20.07■□□□□ 0.82e-7■□□□□ 9.3
VPS4A-202ENST00000562754 SUGT1Q9Y2Z0 365 aa20.07■□□□□ 0.8
VPS4A-202ENST00000562754 ZBTB12Q9Y330 459 aaPredicted RBP20.07■□□□□ 0.8
VPS4A-202ENST00000562754 MYO3BQ8WXR4 1341 aa20.06■□□□□ 0.8
VPS4A-202ENST00000562754 TCRBV5S4A2TA0A5A2 114 aa20.06■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms