RNA–Protein interactions for RNA: ENST00000560959.5

TPM1-226, Transcript of tropomyosin 1, humanhuman

TSL 2 BASIC

Gene TPM1, Length 925 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-226ENST00000560959 TESPA1A2RU30 521 aaPredicted RBP23.74■■□□□ 1.39
TPM1-226ENST00000560959 CERS5Q8N5B7 392 aa23.74■■□□□ 1.39
TPM1-226ENST00000560959 ARMC5Q96C12 935 aa23.74■■□□□ 1.39
TPM1-226ENST00000560959 FZD1Q9UP38 647 aa23.74■■□□□ 1.39
TPM1-226ENST00000560959 IRS2Q9Y4H2 1338 aa23.74■■□□□ 1.39
TPM1-226ENST00000560959 MYH3P11055 1940 aa23.74■■□□□ 1.39
TPM1-226ENST00000560959 IREB2P48200 963 aaKnown RBP23.73■■□□□ 1.39
TPM1-226ENST00000560959 CASP7P55210 303 aa23.73■■□□□ 1.39
TPM1-226ENST00000560959 CLMNQ96JQ2 1002 aa23.73■■□□□ 1.39
TPM1-226ENST00000560959 SPDYE2BA6NHP3 402 aa23.72■■□□□ 1.39
TPM1-226ENST00000560959 SPDYE6P0CI01 402 aa23.72■■□□□ 1.39
TPM1-226ENST00000560959 IL1R1P14778 569 aa23.72■■□□□ 1.39
TPM1-226ENST00000560959 ANKRD13AQ8IZ07 590 aa23.72■■□□□ 1.39
TPM1-226ENST00000560959 MYH16Q9H6N6 1097 aa23.72■■□□□ 1.39
TPM1-226ENST00000560959 CENPFP49454 3210 aa23.72■■□□□ 1.39
TPM1-226ENST00000560959 SSC5DA1L4H1 1573 aa23.71■■□□□ 1.39
TPM1-226ENST00000560959 USP2O75604 605 aaPredicted RBP23.71■■□□□ 1.39
TPM1-226ENST00000560959 CFAP100Q494V2 611 aa23.71■■□□□ 1.39
TPM1-226ENST00000560959 PRMT6Q96LA8 375 aaPredicted RBP23.71■■□□□ 1.39
TPM1-226ENST00000560959 EFCC1Q9HA90 598 aa23.71■■□□□ 1.39
TPM1-226ENST00000560959 ANKRD18BA2A2Z9 1011 aa23.7■■□□□ 1.38
TPM1-226ENST00000560959 SLC4A2P04920 1241 aa23.7■■□□□ 1.38
TPM1-226ENST00000560959 SP3Q02447 781 aa23.7■■□□□ 1.38
TPM1-226ENST00000560959 CRHR2Q13324 411 aa23.7■■□□□ 1.38
TPM1-226ENST00000560959 NBPF12Q5TAG4 269 aaPredicted RBP23.69■■□□□ 1.38
TPM1-226ENST00000560959 G2E3Q7L622 706 aa23.69■■□□□ 1.38
TPM1-226ENST00000560959 ZNF804AQ7Z570 1209 aa23.69■■□□□ 1.38
TPM1-226ENST00000560959 LINS1Q8NG48 757 aa23.69■■□□□ 1.38
TPM1-226ENST00000560959 CD99L2Q8TCZ2 262 aa23.69■■□□□ 1.38
TPM1-226ENST00000560959 PRKRIP1Q9H875 184 aaPredicted RBP23.69■■□□□ 1.38
TPM1-226ENST00000560959 LAMB1P07942 1786 aa23.68■■□□□ 1.38
TPM1-226ENST00000560959 GJA5P36382 358 aa23.68■■□□□ 1.38
TPM1-226ENST00000560959 ARHGEF6Q15052 776 aa23.68■■□□□ 1.38
TPM1-226ENST00000560959 PTPN18Q99952 460 aa23.68■■□□□ 1.38
TPM1-226ENST00000560959 SPEF2Q9C093 1822 aa23.68■■□□□ 1.38
TPM1-226ENST00000560959 CLRN2A0PK11 232 aa23.67■■□□□ 1.38
TPM1-226ENST00000560959 RASA3Q14644 834 aa23.67■■□□□ 1.38
TPM1-226ENST00000560959 TWISTNBQ3B726 338 aaPredicted RBP23.67■■□□□ 1.38
TPM1-226ENST00000560959 PCDHAC2Q9Y5I4 1007 aa23.67■■□□□ 1.38
TPM1-226ENST00000560959 BRCA2P51587 3418 aa23.66■■□□□ 1.38
TPM1-226ENST00000560959 TAF5LO75529 589 aa23.66■■□□□ 1.38
TPM1-226ENST00000560959 FLIIQ13045 1269 aa23.66■■□□□ 1.38
TPM1-226ENST00000560959 IFIT5Q13325 482 aaKnown RBP23.66■■□□□ 1.38
TPM1-226ENST00000560959 TNFAIP1Q13829 316 aa23.66■■□□□ 1.38
TPM1-226ENST00000560959 CCDC27Q2M243 656 aa23.66■■□□□ 1.38
TPM1-226ENST00000560959 DNAAF4Q8WXU2 420 aa23.66■■□□□ 1.38
TPM1-226ENST00000560959 VEZTQ9HBM0 779 aa23.66■■□□□ 1.38
TPM1-226ENST00000560959 F8W031 263 aaPredicted RBP23.65■■□□□ 1.38
TPM1-226ENST00000560959 SNAP23O00161 211 aa23.65■■□□□ 1.38
TPM1-226ENST00000560959 EN2P19622 333 aaPredicted RBP23.65■■□□□ 1.38
TPM1-226ENST00000560959 TSR2Q969E8 191 aaKnown RBP23.65■■□□□ 1.38
TPM1-226ENST00000560959 MS4A4AQ96JQ5 239 aa23.65■■□□□ 1.38
TPM1-226ENST00000560959 TMEM106CQ9BVX2 250 aa23.65■■□□□ 1.38
TPM1-226ENST00000560959 NBPF11Q86T75 865 aa23.64■■□□□ 1.37
TPM1-226ENST00000560959 ZBTB4Q9P1Z0 1013 aaPredicted RBP23.64■■□□□ 1.37
TPM1-226ENST00000560959 RBBP6Q7Z6E9 1792 aaKnown RBP23.64■■□□□ 1.37
TPM1-226ENST00000560959 FOXO4P98177 505 aa23.63■■□□□ 1.37
TPM1-226ENST00000560959 HELBQ8NG08 1087 aaPredicted RBP23.63■■□□□ 1.37
TPM1-226ENST00000560959 OPTNQ96CV9 577 aa23.63■■□□□ 1.37
TPM1-226ENST00000560959 ZNF333Q96JL9 665 aa23.63■■□□□ 1.37
TPM1-226ENST00000560959 SERPINA10Q9UK55 444 aa23.63■■□□□ 1.37
TPM1-226ENST00000560959 KIAA0100Q14667 2235 aaKnown RBP23.63■■□□□ 1.37
TPM1-226ENST00000560959 FAM205AQ6ZU69 1335 aa23.62■■□□□ 1.37
TPM1-226ENST00000560959 RBM5P52756 815 aaKnown RBP eCLIP23.62■■□□□ 1.37
TPM1-226ENST00000560959 FKBP5Q13451 457 aaPredicted RBP23.62■■□□□ 1.37
TPM1-226ENST00000560959 ECM29Q5VYK3 1845 aa23.61■■□□□ 1.37
TPM1-226ENST00000560959 SPDYE2Q495Y8 402 aa23.61■■□□□ 1.37
TPM1-226ENST00000560959 NCBP3Q53F19 620 aaKnown RBP23.61■■□□□ 1.37
TPM1-226ENST00000560959 ZFYVE28Q9HCC9 887 aa23.61■■□□□ 1.37
TPM1-226ENST00000560959 AOX1Q06278 1338 aa23.6■■□□□ 1.37
TPM1-226ENST00000560959 IL16Q14005 1332 aa23.6■■□□□ 1.37
TPM1-226ENST00000560959 FXR1P51114 621 aaKnown RBP eCLIP23.6■■□□□ 1.37
TPM1-226ENST00000560959 GTF2A2P52657 109 aa23.6■■□□□ 1.37
TPM1-226ENST00000560959 CAP1Q01518 475 aa23.6■■□□□ 1.37
TPM1-226ENST00000560959 ELP3Q9H9T3 547 aa23.6■■□□□ 1.37
TPM1-226ENST00000560959 ZNF70Q9UC06 446 aaPredicted RBP23.6■■□□□ 1.37
TPM1-226ENST00000560959 PPP1R3FQ6ZSY5 799 aaPredicted RBP23.59■■□□□ 1.37
TPM1-226ENST00000560959 WWC1Q8IX03 1113 aa23.59■■□□□ 1.37
TPM1-226ENST00000560959 TDRD7Q8NHU6 1098 aaKnown RBP23.59■■□□□ 1.37
TPM1-226ENST00000560959 TEPSINQ96N21 525 aa23.59■■□□□ 1.37
TPM1-226ENST00000560959 MAP3K9P80192 1104 aa23.58■■□□□ 1.37
TPM1-226ENST00000560959 SLC9C1Q4G0N8 1177 aa23.58■■□□□ 1.37
TPM1-226ENST00000560959 LDHAL6AQ6ZMR3 332 aa23.58■■□□□ 1.37
TPM1-226ENST00000560959 BRI3BPQ8WY22 251 aa23.58■■□□□ 1.37
TPM1-226ENST00000560959 UBE4AQ14139 1066 aa23.57■■□□□ 1.36
TPM1-226ENST00000560959 TAF1CQ15572 869 aaPredicted RBP23.57■■□□□ 1.36
TPM1-226ENST00000560959 CCDC57Q2TAC2 916 aa23.57■■□□□ 1.36
TPM1-226ENST00000560959 MFSD14BQ5SR56 506 aa23.57■■□□□ 1.36
TPM1-226ENST00000560959 CCL15-CCL14A0A0B4J2E2 113 aa23.56■■□□□ 1.36
TPM1-226ENST00000560959 WDHD1O75717 1129 aaPredicted RBP23.56■■□□□ 1.36
TPM1-226ENST00000560959 TNNI2P48788 182 aa23.56■■□□□ 1.36
TPM1-226ENST00000560959 CCL15Q16663 113 aa23.56■■□□□ 1.36
TPM1-226ENST00000560959 LMBR1LQ6UX01 489 aa23.56■■□□□ 1.36
TPM1-226ENST00000560959 DZIP1LQ8IYY4 767 aaKnown RBP23.56■■□□□ 1.36
TPM1-226ENST00000560959 DDX55Q8NHQ9 600 aaKnown RBP eCLIP23.56■■□□□ 1.36
TPM1-226ENST00000560959 TDRD3Q9H7E2 651 aaKnown RBP23.56■■□□□ 1.36
TPM1-226ENST00000560959 ZCCHC17Q9NP64 241 aaKnown RBP23.56■■□□□ 1.36
TPM1-226ENST00000560959 TTF2Q9UNY4 1162 aaKnown RBP23.56■■□□□ 1.36
TPM1-226ENST00000560959 PTCH2Q9Y6C5 1203 aa23.56■■□□□ 1.36
TPM1-226ENST00000560959 GNRH1P01148 92 aa23.55■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms