RNA–Protein interactions for RNA: ENST00000560444.1

PIF1-208, Transcript of PIF1 5'-to-3' DNA helicase, human

TSL 2

Gene PIF1, Length 1,631 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PIF1-208	ENST00000560444	ZNF532	Q9HCE3	1301 aa		28.3	■■■□□ 2.12
PIF1-208	ENST00000560444	PRR5L	Q6MZQ0	368 aa		28.29	■■■□□ 2.12
PIF1-208	ENST00000560444	CCDC24	Q8N4L8	307 aa		28.29	■■■□□ 2.12
PIF1-208	ENST00000560444	RGPD3	A6NKT7	1758 aa	Predicted RBP	28.29	■■■□□ 2.12
PIF1-208	ENST00000560444	RGPD4	Q7Z3J3	1758 aa		28.29	■■■□□ 2.12
PIF1-208	ENST00000560444	ZBTB22	O15209	634 aa		28.29	■■■□□ 2.12
PIF1-208	ENST00000560444	ST5	P78524	1137 aa		28.29	■■■□□ 2.12
PIF1-208	ENST00000560444	SEMA3E	O15041	775 aa		28.28	■■■□□ 2.12
PIF1-208	ENST00000560444	SERPINB2	P05120	415 aa		28.28	■■■□□ 2.12
PIF1-208	ENST00000560444	IMMT	Q16891	758 aa	Known RBP	28.28	■■■□□ 2.12
PIF1-208	ENST00000560444	AKT1S1	Q96B36	256 aa		28.28	■■■□□ 2.12
PIF1-208	ENST00000560444	TFCP2L1	Q9NZI6	479 aa		28.28	■■■□□ 2.12
PIF1-208	ENST00000560444	CASZ1	Q86V15	1759 aa		28.28	■■■□□ 2.12
PIF1-208	ENST00000560444	GRAP	Q13588	217 aa		28.27	■■■□□ 2.12
PIF1-208	ENST00000560444	DHX32	Q7L7V1	743 aa	Known RBP	28.27	■■■□□ 2.12
PIF1-208	ENST00000560444	GRAPL	Q8TC17	118 aa	Predicted RBP	28.27	■■■□□ 2.12
PIF1-208	ENST00000560444	WWC3	Q9ULE0	1092 aa		28.27	■■■□□ 2.12
PIF1-208	ENST00000560444	GOLGA6L22	H0YM25	854 aa		28.26	■■■□□ 2.11
PIF1-208	ENST00000560444	FOXP2	O15409	715 aa		28.26	■■■□□ 2.11
PIF1-208	ENST00000560444	FGA	P02671	866 aa		28.26	■■■□□ 2.11
PIF1-208	ENST00000560444	BAG6	P46379	1132 aa		28.26	■■■□□ 2.11
PIF1-208	ENST00000560444	ME3	Q16798	604 aa		28.26	■■■□□ 2.11
PIF1-208	ENST00000560444	FBXO33	Q7Z6M2	555 aa		28.26	■■■□□ 2.11
PIF1-208	ENST00000560444	DENND2A	Q9ULE3	1009 aa		28.26	■■■□□ 2.11
PIF1-208	ENST00000560444	TPCN1	Q9ULQ1	816 aa		28.26	■■■□□ 2.11
PIF1-208	ENST00000560444	ZDHHC9	Q9Y397	364 aa		28.26	■■■□□ 2.11
PIF1-208	ENST00000560444	MYH7	P12883	1935 aa		28.26	■■■□□ 2.11
PIF1-208	ENST00000560444		E7EWF7	191 aa		28.25	■■■□□ 2.11
PIF1-208	ENST00000560444	BRD1	O95696	1058 aa		28.25	■■■□□ 2.11
PIF1-208	ENST00000560444	PKP1	Q13835	747 aa		28.25	■■■□□ 2.11
PIF1-208	ENST00000560444	TOB2	Q14106	344 aa	Predicted RBP	28.25	■■■□□ 2.11
PIF1-208	ENST00000560444	DEFB132	Q7Z7B7	95 aa		28.25	■■■□□ 2.11
PIF1-208	ENST00000560444	VPS37D	Q86XT2	251 aa		28.25	■■■□□ 2.11
PIF1-208	ENST00000560444	FAM84B	Q96KN1	310 aa	Predicted RBP	28.25	■■■□□ 2.11
PIF1-208	ENST00000560444	LARP6	Q9BRS8	491 aa	Known RBP	28.25	■■■□□ 2.11
PIF1-208	ENST00000560444	BAG4	O95429	457 aa	Known RBP	28.25	■■■□□ 2.11
PIF1-208	ENST00000560444	GYG1	P46976	350 aa		28.25	■■■□□ 2.11
PIF1-208	ENST00000560444	STOX1	Q6ZVD7	989 aa		28.25	■■■□□ 2.11
PIF1-208	ENST00000560444	FLAD1	Q8NFF5	587 aa		28.25	■■■□□ 2.11
PIF1-208	ENST00000560444	SMC3	Q9UQE7	1217 aa		28.25	■■■□□ 2.11
PIF1-208	ENST00000560444	CRY2	Q49AN0	593 aa		28.24	■■■□□ 2.11
PIF1-208	ENST00000560444	MAGEB6	Q8N7X4	407 aa		28.24	■■■□□ 2.11
PIF1-208	ENST00000560444	PDS5A	Q29RF7	1337 aa	Known RBP	28.24	■■■□□ 2.11
PIF1-208	ENST00000560444		A0A1B0GUL6	1792 aa		28.24	■■■□□ 2.11
PIF1-208	ENST00000560444	LARGE1	O95461	756 aa		28.23	■■■□□ 2.11
PIF1-208	ENST00000560444	PDIA4	P13667	645 aa	Known RBP	28.23	■■■□□ 2.11
PIF1-208	ENST00000560444	EXOSC10	Q01780	885 aa	Known RBP	28.23	■■■□□ 2.11
PIF1-208	ENST00000560444	AIDA	Q96BJ3	306 aa		28.23	■■■□□ 2.11
PIF1-208	ENST00000560444	STRBP	Q96SI9	672 aa	Known RBP	28.23	■■■□□ 2.11
PIF1-208	ENST00000560444	COL9A3	Q14050	684 aa	Predicted RBP	28.22	■■■□□ 2.11
PIF1-208	ENST00000560444	ALX1	Q15699	326 aa		28.22	■■■□□ 2.11
PIF1-208	ENST00000560444	LRP2BP	Q9P2M1	347 aa		28.22	■■■□□ 2.11
PIF1-208	ENST00000560444	ZNF213	O14771	459 aa		28.21	■■■□□ 2.11
PIF1-208	ENST00000560444	SKOR2	Q2VWA4	1001 aa	Predicted RBP	28.21	■■■□□ 2.11
PIF1-208	ENST00000560444	TTLL5	Q6EMB2	1281 aa		28.21	■■■□□ 2.11
PIF1-208	ENST00000560444		Q6ZUG5	572 aa		28.21	■■■□□ 2.11
PIF1-208	ENST00000560444	CCDC83	Q8IWF9	413 aa		28.21	■■■□□ 2.11
PIF1-208	ENST00000560444	NLGN1	Q8N2Q7	840 aa		28.21	■■■□□ 2.11
PIF1-208	ENST00000560444	RPGR	Q92834	1020 aa	Known RBP	28.21	■■■□□ 2.11
PIF1-208	ENST00000560444	LEMD3	Q9Y2U8	911 aa		28.21	■■■□□ 2.11
PIF1-208	ENST00000560444	TNRC6C	Q9HCJ0	1690 aa	Known RBP	28.21	■■■□□ 2.11
PIF1-208	ENST00000560444	ZMYM6	O95789	1325 aa		28.21	■■■□□ 2.11
PIF1-208	ENST00000560444	WDR33	Q9C0J8	1336 aa	Known RBP	28.21	■■■□□ 2.11
PIF1-208	ENST00000560444	FBXL16	Q8N461	479 aa		28.21	■■■□□ 2.11
PIF1-208	ENST00000560444	DOCK2	Q92608	1830 aa		28.2	■■■□□ 2.11
PIF1-208	ENST00000560444	PATL2	C9JE40	543 aa	Known RBP	28.2	■■■□□ 2.1
PIF1-208	ENST00000560444	POLRMT	O00411	1230 aa	Known RBP	28.2	■■■□□ 2.1
PIF1-208	ENST00000560444	TRAK2	O60296	914 aa		28.2	■■■□□ 2.1
PIF1-208	ENST00000560444	GNAT2	P19087	354 aa		28.2	■■■□□ 2.1
PIF1-208	ENST00000560444	HIBADH	P31937	336 aa	Known RBP	28.2	■■■□□ 2.1
PIF1-208	ENST00000560444	GSE1	Q14687	1217 aa		28.2	■■■□□ 2.1
PIF1-208	ENST00000560444	RBM17	Q96I25	401 aa	Known RBP	28.2	■■■□□ 2.1
PIF1-208	ENST00000560444	TCEANC2	Q96MN5	208 aa		28.2	■■■□□ 2.1
PIF1-208	ENST00000560444	AGXT2	Q9BYV1	514 aa		28.2	■■■□□ 2.1
PIF1-208	ENST00000560444	TAF1	P21675	1872 aa		28.2	■■■□□ 2.1
PIF1-208	ENST00000560444	WTIP	A6NIX2	430 aa	Predicted RBP	28.19	■■■□□ 2.1
PIF1-208	ENST00000560444	KLRG2	A4D1S0	409 aa	Predicted RBP	28.18	■■■□□ 2.1
PIF1-208	ENST00000560444	TMED8	Q6PL24	325 aa	Predicted RBP	28.18	■■■□□ 2.1
PIF1-208	ENST00000560444	COL23A1	Q86Y22	540 aa	Predicted RBP	28.18	■■■□□ 2.1
PIF1-208	ENST00000560444	PNPLA7	Q6ZV29	1317 aa		28.18	■■■□□ 2.1
PIF1-208	ENST00000560444	DDR1	Q08345	913 aa		28.18	■■■□□ 2.1
PIF1-208	ENST00000560444	ANO8	Q9HCE9	1232 aa	Predicted RBP	28.18	■■■□□ 2.1
PIF1-208	ENST00000560444	IGSF3	O75054	1194 aa		28.17	■■■□□ 2.1
PIF1-208	ENST00000560444	HOXA10	P31260	410 aa	Predicted RBP	28.17	■■■□□ 2.1
PIF1-208	ENST00000560444	FGD1	P98174	961 aa		28.17	■■■□□ 2.1
PIF1-208	ENST00000560444		A0A0G2JLW4	131 aa		28.16	■■■□□ 2.1
PIF1-208	ENST00000560444	BBOX1	O75936	387 aa		28.16	■■■□□ 2.1
PIF1-208	ENST00000560444	APP	P05067	770 aa		28.16	■■■□□ 2.1
PIF1-208	ENST00000560444	ST3GAL1	Q11201	340 aa		28.16	■■■□□ 2.1
PIF1-208	ENST00000560444	NECAB1	Q8N987	351 aa		28.16	■■■□□ 2.1
PIF1-208	ENST00000560444	CHMP4C	Q96CF2	233 aa		28.16	■■■□□ 2.1
PIF1-208	ENST00000560444	IQSEC3	Q9UPP2	1182 aa	Predicted RBP	28.16	■■■□□ 2.1
PIF1-208	ENST00000560444	XDH	P47989	1333 aa		28.15	■■■□□ 2.1
PIF1-208	ENST00000560444	MBD4	O95243	580 aa		28.15	■■■□□ 2.1
PIF1-208	ENST00000560444	GJB2	P29033	226 aa		28.15	■■■□□ 2.1
PIF1-208	ENST00000560444	C15orf52	Q6ZUT6	534 aa	Known RBP	28.15	■■■□□ 2.1
PIF1-208	ENST00000560444	NCOA7	Q8NI08	942 aa		28.15	■■■□□ 2.1
PIF1-208	ENST00000560444	CRAMP1	Q96RY5	1269 aa		28.15	■■■□□ 2.1
PIF1-208	ENST00000560444	ANKIB1	Q9P2G1	1089 aa		28.15	■■■□□ 2.1
PIF1-208	ENST00000560444	WDR19	Q8NEZ3	1342 aa		28.15	■■■□□ 2.1

Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms