RNA–Protein interactions for RNA: ENST00000560349.1

CARMIL3-203, Transcript of capping protein regulator and myosin 1 linker 3, humanhuman

TSL 1 (best)

Gene CARMIL3, Length 2,664 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CARMIL3-203ENST00000560349 NPHP1O15259 732 aa16.72■□□□□ 0.27
CARMIL3-203ENST00000560349 APPP05067 770 aa16.72■□□□□ 0.27
CARMIL3-203ENST00000560349 GYG1P46976 350 aa16.72■□□□□ 0.27
CARMIL3-203ENST00000560349 CLEC4GQ6UXB4 293 aa16.72■□□□□ 0.27
CARMIL3-203ENST00000560349 LRRC4BQ9NT99 713 aa16.72■□□□□ 0.27
CARMIL3-203ENST00000560349 RTCBQ9Y3I0 505 aaKnown RBP16.72■□□□□ 0.27
CARMIL3-203ENST00000560349 TCHHQ07283 1943 aa16.72■□□□□ 0.27
CARMIL3-203ENST00000560349 ARID4AP29374 1257 aaPredicted RBP16.72■□□□□ 0.27
CARMIL3-203ENST00000560349 ADD2P35612 726 aa16.72■□□□□ 0.27
CARMIL3-203ENST00000560349 CCT2P78371 535 aaKnown RBP16.72■□□□□ 0.27
CARMIL3-203ENST00000560349 NKX2-3Q8TAU0 364 aa16.72■□□□□ 0.27
CARMIL3-203ENST00000560349 AK7Q96M32 723 aa16.72■□□□□ 0.27
CARMIL3-203ENST00000560349 NCOA5Q9HCD5 579 aaKnown RBP16.72■□□□□ 0.27
CARMIL3-203ENST00000560349 ISY1Q9ULR0 285 aaKnown RBP16.72■□□□□ 0.27
CARMIL3-203ENST00000560349 LRP5O75197 1615 aa16.71■□□□□ 0.27
CARMIL3-203ENST00000560349 FIBPO43427 364 aa16.71■□□□□ 0.27
CARMIL3-203ENST00000560349 RPS6KA4O75676 772 aa16.71■□□□□ 0.27
CARMIL3-203ENST00000560349 PDE6AP16499 860 aa16.71■□□□□ 0.27
CARMIL3-203ENST00000560349 AEBP2Q6ZN18 517 aaPredicted RBP16.71■□□□□ 0.27
CARMIL3-203ENST00000560349 FAM196AQ6ZSG2 479 aa16.71■□□□□ 0.27
CARMIL3-203ENST00000560349 CDC37L1Q7L3B6 337 aa16.71■□□□□ 0.27
CARMIL3-203ENST00000560349 MAGEB6Q8N7X4 407 aa16.71■□□□□ 0.27
CARMIL3-203ENST00000560349 SETDB2Q96T68 719 aa16.71■□□□□ 0.27
CARMIL3-203ENST00000560349 NARFQ9UHQ1 456 aa16.71■□□□□ 0.27
CARMIL3-203ENST00000560349 MTMR6Q9Y217 621 aa16.71■□□□□ 0.27
CARMIL3-203ENST00000560349 KLRK1P26718 216 aa16.71■□□□□ 0.26
CARMIL3-203ENST00000560349 STK11IPQ8N1F8 1099 aa16.71■□□□□ 0.26
CARMIL3-203ENST00000560349 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.71■□□□□ 0.26
CARMIL3-203ENST00000560349 THSD7AQ9UPZ6 1657 aa16.7■□□□□ 0.26
CARMIL3-203ENST00000560349 F13A1P00488 732 aa16.7■□□□□ 0.26
CARMIL3-203ENST00000560349 ZFYP08048 801 aaPredicted RBP16.7■□□□□ 0.26
CARMIL3-203ENST00000560349 ANKRD1Q15327 319 aa16.7■□□□□ 0.26
CARMIL3-203ENST00000560349 LARP1BQ659C4 914 aaKnown RBP16.7■□□□□ 0.26
CARMIL3-203ENST00000560349 ANKRD18AQ8IVF6 992 aa16.7■□□□□ 0.26
CARMIL3-203ENST00000560349 USP48Q86UV5 1035 aa16.7■□□□□ 0.26
CARMIL3-203ENST00000560349 QTRT2Q9H974 415 aaKnown RBP16.7■□□□□ 0.26
CARMIL3-203ENST00000560349 INCENPQ9NQS7 918 aa16.7■□□□□ 0.26
CARMIL3-203ENST00000560349 TAOK2Q9UL54 1235 aa16.7■□□□□ 0.26
CARMIL3-203ENST00000560349 SCRN1Q12765 414 aa16.69■□□□□ 0.26
CARMIL3-203ENST00000560349 DHX32Q7L7V1 743 aaKnown RBP16.69■□□□□ 0.26
CARMIL3-203ENST00000560349 CDC5LQ99459 802 aaKnown RBP16.69■□□□□ 0.26
CARMIL3-203ENST00000560349 TMEM63CQ9P1W3 806 aa16.69■□□□□ 0.26
CARMIL3-203ENST00000560349 BCORQ6W2J9 1755 aa16.69■□□□□ 0.26
CARMIL3-203ENST00000560349 CLCN1P35523 988 aa16.69■□□□□ 0.26
CARMIL3-203ENST00000560349 DNM1Q05193 864 aaKnown RBP16.69■□□□□ 0.26
CARMIL3-203ENST00000560349 LRRFIP1Q32MZ4 808 aaKnown RBP16.69■□□□□ 0.26
CARMIL3-203ENST00000560349 GLIPR1L2Q4G1C9 344 aa16.69■□□□□ 0.26
CARMIL3-203ENST00000560349 MIGA1Q8NAN2 632 aa16.69■□□□□ 0.26
CARMIL3-203ENST00000560349 JAG2Q9Y219 1238 aa16.69■□□□□ 0.26
CARMIL3-203ENST00000560349 PTMSP20962 102 aa16.68■□□□□ 0.26
CARMIL3-203ENST00000560349 ZSCAN23Q3MJ62 389 aa16.68■□□□□ 0.26
CARMIL3-203ENST00000560349 GTF3C6Q969F1 213 aa16.68■□□□□ 0.26
CARMIL3-203ENST00000560349 ABCF2Q9UG63 623 aa16.68■□□□□ 0.26
CARMIL3-203ENST00000560349 LAMA4Q16363 1823 aa16.68■□□□□ 0.26
CARMIL3-203ENST00000560349 UQCRFS1P1P0C7P4 283 aa16.68■□□□□ 0.26
CARMIL3-203ENST00000560349 RFC4P35249 363 aa16.68■□□□□ 0.26
CARMIL3-203ENST00000560349 IMMTQ16891 758 aaKnown RBP16.68■□□□□ 0.26
CARMIL3-203ENST00000560349 ARMT1Q9H993 441 aa16.68■□□□□ 0.26
CARMIL3-203ENST00000560349 TRPC5Q9UL62 973 aaPredicted RBP16.68■□□□□ 0.26
CARMIL3-203ENST00000560349 AIDAQ96BJ3 306 aa16.67■□□□□ 0.26
CARMIL3-203ENST00000560349 CICQ96RK0 1608 aaPredicted RBP16.67■□□□□ 0.26
CARMIL3-203ENST00000560349 TCRBV5S4A2TA0A5A2 114 aa16.67■□□□□ 0.26
CARMIL3-203ENST00000560349 PRKAB2O43741 272 aa16.67■□□□□ 0.26
CARMIL3-203ENST00000560349 TRIM37O94972 964 aa16.67■□□□□ 0.26
CARMIL3-203ENST00000560349 MBD4O95243 580 aa16.67■□□□□ 0.26
CARMIL3-203ENST00000560349 TTF1Q15361 905 aaPredicted RBP16.67■□□□□ 0.26
CARMIL3-203ENST00000560349 NBPF3Q9H094 633 aa16.67■□□□□ 0.26
CARMIL3-203ENST00000560349 MINPP1Q9UNW1 487 aa16.67■□□□□ 0.26
CARMIL3-203ENST00000560349 EXOSC10Q01780 885 aaKnown RBP16.66■□□□□ 0.26
CARMIL3-203ENST00000560349 TBC1D10CQ8IV04 446 aa16.66■□□□□ 0.26
CARMIL3-203ENST00000560349 ZNF512BQ96KM6 892 aaPredicted RBP16.66■□□□□ 0.26
CARMIL3-203ENST00000560349 TFCP2L1Q9NZI6 479 aa16.66■□□□□ 0.26
CARMIL3-203ENST00000560349 NHSQ6T4R5 1651 aa16.66■□□□□ 0.26
CARMIL3-203ENST00000560349 MYH7P12883 1935 aa16.66■□□□□ 0.26
CARMIL3-203ENST00000560349 SYCE3A1L190 88 aa16.65■□□□□ 0.26
CARMIL3-203ENST00000560349 ZNF213O14771 459 aa16.65■□□□□ 0.26
CARMIL3-203ENST00000560349 RC3H1Q5TC82 1133 aaKnown RBP16.65■□□□□ 0.26
CARMIL3-203ENST00000560349 LRP2BPQ9P2M1 347 aa16.65■□□□□ 0.26
CARMIL3-203ENST00000560349 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.65■□□□□ 0.26
CARMIL3-203ENST00000560349 SF3B3Q15393 1217 aaKnown RBP16.65■□□□□ 0.26
CARMIL3-203ENST00000560349 ADGRA1Q86SQ6 560 aa16.65■□□□□ 0.26
CARMIL3-203ENST00000560349 NLRP3Q96P20 1036 aa16.65■□□□□ 0.26
CARMIL3-203ENST00000560349 TRAPPC3LQ5T215 181 aa16.64■□□□□ 0.26
CARMIL3-203ENST00000560349 ZSCAN25Q6NSZ9 544 aa16.64■□□□□ 0.26
CARMIL3-203ENST00000560349 VPS37DQ86XT2 251 aa16.64■□□□□ 0.26
CARMIL3-203ENST00000560349 ALDH8A1Q9H2A2 487 aaPredicted RBP16.64■□□□□ 0.26
CARMIL3-203ENST00000560349 RTL9Q8NET4 1388 aa16.64■□□□□ 0.25
CARMIL3-203ENST00000560349 PRC1O43663 620 aa16.64■□□□□ 0.25
CARMIL3-203ENST00000560349 MAP3K12Q12852 859 aa16.64■□□□□ 0.25
CARMIL3-203ENST00000560349 UBE3CQ15386 1083 aa16.64■□□□□ 0.25
CARMIL3-203ENST00000560349 LCORLQ8N3X6 602 aa16.64■□□□□ 0.25
CARMIL3-203ENST00000560349 EPB41L4AQ9HCS5 686 aaPredicted RBP16.64■□□□□ 0.25
CARMIL3-203ENST00000560349 CTNNA3Q9UI47 895 aa16.64■□□□□ 0.25
CARMIL3-203ENST00000560349 SCN7AQ01118 1682 aa16.64■□□□□ 0.25
CARMIL3-203ENST00000560349 SMIM22K7EJ46 135 aa16.63■□□□□ 0.25
CARMIL3-203ENST00000560349 CTDNEP1O95476 244 aa16.63■□□□□ 0.25
CARMIL3-203ENST00000560349 HMGB1P09429 215 aaKnown RBP16.63■□□□□ 0.25
CARMIL3-203ENST00000560349 RXRAP19793 462 aa16.63■□□□□ 0.25
CARMIL3-203ENST00000560349 ANTXR2P58335 489 aa16.63■□□□□ 0.25
CARMIL3-203ENST00000560349 GUCY1B3Q02153 619 aa16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms