RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 CFPP27918 469 aa2.85□□□□□ -1.95
USP3-209ENST00000558925 SOX18P35713 384 aa2.85□□□□□ -1.95
USP3-209ENST00000558925 RBM25P49756 843 aaKnown RBP2.85□□□□□ -1.95
USP3-209ENST00000558925 MESP2Q0VG99 397 aa2.85□□□□□ -1.95
USP3-209ENST00000558925 TRIP4Q15650 581 aaPredicted RBP2.85□□□□□ -1.95
USP3-209ENST00000558925 CCDC27Q2M243 656 aa2.85□□□□□ -1.95
USP3-209ENST00000558925 HGSNATQ68CP4 663 aa2.85□□□□□ -1.95
USP3-209ENST00000558925 CAPN12Q6ZSI9 719 aa2.85□□□□□ -1.95
USP3-209ENST00000558925 TRIM50Q86XT4 487 aa2.85□□□□□ -1.95
USP3-209ENST00000558925 LARGE2Q8N3Y3 721 aa2.85□□□□□ -1.95
USP3-209ENST00000558925 GATA6Q92908 595 aa2.85□□□□□ -1.95
USP3-209ENST00000558925 OSBPL1AQ9BXW6 950 aa2.85□□□□□ -1.95
USP3-209ENST00000558925 MUC3BQ9H195 1237 aa2.85□□□□□ -1.95
USP3-209ENST00000558925 ANO2Q9NQ90 1003 aa2.85□□□□□ -1.95
USP3-209ENST00000558925 ATG3Q9NT62 314 aa2.85□□□□□ -1.95
USP3-209ENST00000558925 BSDC1Q9NW68 430 aaPredicted RBP2.85□□□□□ -1.95
USP3-209ENST00000558925 GNEQ9Y223 722 aaKnown RBP2.85□□□□□ -1.95
USP3-209ENST00000558925 HIF3AQ9Y2N7 669 aa2.85□□□□□ -1.95
USP3-209ENST00000558925 FAM170BA6NMN3 283 aa2.84□□□□□ -1.95
USP3-209ENST00000558925 PATL2C9JE40 543 aaKnown RBP2.84□□□□□ -1.95
USP3-209ENST00000558925 SART1O43290 800 aaKnown RBP2.84□□□□□ -1.95
USP3-209ENST00000558925 CDC27P30260 824 aa2.84□□□□□ -1.95
USP3-209ENST00000558925 ATP1A2P50993 1020 aa2.84□□□□□ -1.95
USP3-209ENST00000558925 ZNF211Q13398 564 aaPredicted RBP2.84□□□□□ -1.95
USP3-209ENST00000558925 OCLNQ16625 522 aa2.84□□□□□ -1.95
USP3-209ENST00000558925 ZNF792Q3KQV3 632 aa2.84□□□□□ -1.95
USP3-209ENST00000558925 NOM1Q5C9Z4 860 aaKnown RBP2.84□□□□□ -1.95
USP3-209ENST00000558925 CEP135Q66GS9 1140 aa2.84□□□□□ -1.95
USP3-209ENST00000558925 ANKRD34AQ69YU3 496 aa2.84□□□□□ -1.95
USP3-209ENST00000558925 SPRED2Q7Z698 418 aa2.84□□□□□ -1.95
USP3-209ENST00000558925 RGL4Q8IZJ4 473 aa2.84□□□□□ -1.95
USP3-209ENST00000558925 CMTR1Q8N1G2 835 aaKnown RBP2.84□□□□□ -1.95
USP3-209ENST00000558925 KLHL23Q8NBE8 558 aa2.84□□□□□ -1.95
USP3-209ENST00000558925 MKNK1Q9BUB5 465 aa2.84□□□□□ -1.95
USP3-209ENST00000558925 RASSF4Q9H2L5 321 aa2.84□□□□□ -1.95
USP3-209ENST00000558925 ZC3H7BQ9UGR2 993 aaKnown RBP2.84□□□□□ -1.95
USP3-209ENST00000558925 SEPT3Q9UH03 358 aa2.84□□□□□ -1.95
USP3-209ENST00000558925 LRFN2Q9ULH4 789 aa2.84□□□□□ -1.95
USP3-209ENST00000558925 SOWAHDA6NJG2 315 aa2.83□□□□□ -1.96
USP3-209ENST00000558925 CYP26A1O43174 497 aa2.83□□□□□ -1.96
USP3-209ENST00000558925 DLGAP3O95886 979 aa2.83□□□□□ -1.96
USP3-209ENST00000558925 ARID4AP29374 1257 aaPredicted RBP2.83□□□□□ -1.96
USP3-209ENST00000558925 SEC13P55735 322 aa2.83□□□□□ -1.96
USP3-209ENST00000558925 NLRP12P59046 1061 aa2.83□□□□□ -1.96
USP3-209ENST00000558925 FKBP5Q13451 457 aaPredicted RBP2.83□□□□□ -1.96
USP3-209ENST00000558925 MTMR3Q13615 1198 aa2.83□□□□□ -1.96
USP3-209ENST00000558925 SWI5Q1ZZU3 235 aa2.83□□□□□ -1.96
USP3-209ENST00000558925 KRTAP19-4Q3LI73 84 aa2.83□□□□□ -1.96
USP3-209ENST00000558925 FAM26DQ5JW98 314 aa2.83□□□□□ -1.96
USP3-209ENST00000558925 B4GALNT3Q6L9W6 998 aa2.83□□□□□ -1.96
USP3-209ENST00000558925 CDPF1Q6NVV7 123 aa2.83□□□□□ -1.96
USP3-209ENST00000558925 AGBL5Q8NDL9 886 aa2.83□□□□□ -1.96
USP3-209ENST00000558925 GLIS3Q8NEA6 775 aa2.83□□□□□ -1.96
USP3-209ENST00000558925 BCL7CQ8WUZ0 217 aaPredicted RBP2.83□□□□□ -1.96
USP3-209ENST00000558925 FAM168AQ92567 244 aa2.83□□□□□ -1.96
USP3-209ENST00000558925 RNF208Q9H0X6 261 aa2.83□□□□□ -1.96
USP3-209ENST00000558925 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP2.83□□□□□ -1.96
USP3-209ENST00000558925 CXXC1Q9P0U4 656 aaPredicted RBP2.83□□□□□ -1.96
USP3-209ENST00000558925 ADAMTS6Q9UKP5 1117 aa2.83□□□□□ -1.96
USP3-209ENST00000558925 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP2.83□□□□□ -1.96
USP3-209ENST00000558925 MEGF11A6BM72 1044 aa2.82□□□□□ -1.96
USP3-209ENST00000558925 TIAF1O95411 115 aa2.82□□□□□ -1.96
USP3-209ENST00000558925 ABL1P00519 1130 aa2.82□□□□□ -1.96
USP3-209ENST00000558925 PKN1Q16512 942 aa2.82□□□□□ -1.96
USP3-209ENST00000558925 CPSF6Q16630 551 aaKnown RBP eCLIP2.82□□□□□ -1.96
USP3-209ENST00000558925 KSR1Q8IVT5 923 aa2.82□□□□□ -1.96
USP3-209ENST00000558925 CACTIN-AS1Q8N1I8 211 aa2.82□□□□□ -1.96
USP3-209ENST00000558925 OR13H1Q8NG92 308 aa2.82□□□□□ -1.96
USP3-209ENST00000558925 HINFPQ9BQA5 517 aa2.82□□□□□ -1.96
USP3-209ENST00000558925 RUSC1Q9BVN2 902 aa2.82□□□□□ -1.96
USP3-209ENST00000558925 RBSNQ9H1K0 784 aa2.82□□□□□ -1.96
USP3-209ENST00000558925 SEC31BQ9NQW1 1179 aa2.82□□□□□ -1.96
USP3-209ENST00000558925 LMCD1Q9NZU5 365 aa2.82□□□□□ -1.96
USP3-209ENST00000558925 PRKAG2Q9UGJ0 569 aa2.82□□□□□ -1.96
USP3-209ENST00000558925 FAM95CA0A1B0GW59 222 aa2.81□□□□□ -1.96
USP3-209ENST00000558925 UNCXA6NJT0 531 aa2.81□□□□□ -1.96
USP3-209ENST00000558925 H3BRB1 525 aa2.81□□□□□ -1.96
USP3-209ENST00000558925 GAS2O43903 313 aaKnown RBP2.81□□□□□ -1.96
USP3-209ENST00000558925 CYP2E1P05181 493 aaPredicted RBP2.81□□□□□ -1.96
USP3-209ENST00000558925 DRD2P14416 443 aa2.81□□□□□ -1.96
USP3-209ENST00000558925 IGFBP4P22692 258 aa2.81□□□□□ -1.96
USP3-209ENST00000558925 RXRBP28702 533 aa2.81□□□□□ -1.96
USP3-209ENST00000558925 WEE1P30291 646 aa2.81□□□□□ -1.96
USP3-209ENST00000558925 PLCL1Q15111 1095 aa2.81□□□□□ -1.96
USP3-209ENST00000558925 NFKBIBQ15653 356 aa2.81□□□□□ -1.96
USP3-209ENST00000558925 ECM1Q16610 540 aa2.81□□□□□ -1.96
USP3-209ENST00000558925 C11orf91Q3C1V1 193 aa2.81□□□□□ -1.96
USP3-209ENST00000558925 FDX2Q6P4F2 183 aa2.81□□□□□ -1.96
USP3-209ENST00000558925 DNAJC14Q6Y2X3 702 aaPredicted RBP2.81□□□□□ -1.96
USP3-209ENST00000558925 TTLL10Q6ZVT0 673 aa2.81□□□□□ -1.96
USP3-209ENST00000558925 ZAR1Q86SH2 424 aa2.81□□□□□ -1.96
USP3-209ENST00000558925 TREML1Q86YW5 311 aa2.81□□□□□ -1.96
USP3-209ENST00000558925 FBLIM1Q8WUP2 373 aa2.81□□□□□ -1.96
USP3-209ENST00000558925 MYO19Q96H55 970 aa2.81□□□□□ -1.96
USP3-209ENST00000558925 POP1Q99575 1024 aaKnown RBP2.81□□□□□ -1.96
USP3-209ENST00000558925 TUT1Q9H6E5 874 aaKnown RBP2.81□□□□□ -1.96
USP3-209ENST00000558925 MBNL3Q9NUK0 354 aaKnown RBP2.81□□□□□ -1.96
USP3-209ENST00000558925 BIN2Q9UBW5 565 aaPredicted RBP2.81□□□□□ -1.96
USP3-209ENST00000558925 RBM19Q9Y4C8 960 aaKnown RBP2.81□□□□□ -1.96
USP3-209ENST00000558925 H3BRJ5 948 aa2.8□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms