RNA–Protein interactions for RNA: ENST00000558469.5

CUX1-216, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-216ENST00000558469 STAP2Q9UGK3 403 aa11.75□□□□□ -0.53
CUX1-216ENST00000558469 IQSEC3Q9UPP2 1182 aaPredicted RBP11.75□□□□□ -0.53
CUX1-216ENST00000558469 MYH7P12883 1935 aa11.75□□□□□ -0.53
CUX1-216ENST00000558469 SCN9AQ15858 1988 aa11.75□□□□□ -0.53
CUX1-216ENST00000558469 TTC41PQ6P2S7 1318 aa11.75□□□□□ -0.53
CUX1-216ENST00000558469 PPIP5K2O43314 1243 aa11.74□□□□□ -0.53
CUX1-216ENST00000558469 RASSF7Q02833 373 aa11.74□□□□□ -0.53
CUX1-216ENST00000558469 KIAA2012Q0VF49 1180 aa11.74□□□□□ -0.53
CUX1-216ENST00000558469 DOK7Q18PE1 504 aa11.74□□□□□ -0.53
CUX1-216ENST00000558469 GNL3LQ9NVN8 582 aaKnown RBP11.74□□□□□ -0.53
CUX1-216ENST00000558469 ZNF646O15015 1829 aaPredicted RBP11.73□□□□□ -0.53
CUX1-216ENST00000558469 ERC2O15083 957 aa11.73□□□□□ -0.53
CUX1-216ENST00000558469 FRAT2O75474 233 aaPredicted RBP11.73□□□□□ -0.53
CUX1-216ENST00000558469 UQCRFS1P1P0C7P4 283 aa11.73□□□□□ -0.53
CUX1-216ENST00000558469 ATP5JP18859 108 aa11.73□□□□□ -0.53
CUX1-216ENST00000558469 ARID4AP29374 1257 aaPredicted RBP11.73□□□□□ -0.53
CUX1-216ENST00000558469 IARSP41252 1262 aaKnown RBP11.73□□□□□ -0.53
CUX1-216ENST00000558469 AOX1Q06278 1338 aa11.73□□□□□ -0.53
CUX1-216ENST00000558469 LARGE2Q8N3Y3 721 aa11.73□□□□□ -0.53
CUX1-216ENST00000558469 PI4K2BQ8TCG2 481 aa11.73□□□□□ -0.53
CUX1-216ENST00000558469 COA1Q9GZY4 146 aa11.73□□□□□ -0.53
CUX1-216ENST00000558469 VPS33BQ9H267 617 aa11.73□□□□□ -0.53
CUX1-216ENST00000558469 BOLA2Q9H3K6 86 aa11.73□□□□□ -0.53
CUX1-216ENST00000558469 OSBPL3Q9H4L5 887 aa11.73□□□□□ -0.53
CUX1-216ENST00000558469 CD209Q9NNX6 404 aa11.73□□□□□ -0.53
CUX1-216ENST00000558469 LTBP3Q9NS15 1303 aa11.73□□□□□ -0.53
CUX1-216ENST00000558469 DOCK2Q92608 1830 aa11.72□□□□□ -0.53
CUX1-216ENST00000558469 TIAM2Q8IVF5 1701 aa11.72□□□□□ -0.53
CUX1-216ENST00000558469 COL4A5P29400 1685 aa11.72□□□□□ -0.53
CUX1-216ENST00000558469 ECE2O60344 883 aa11.72□□□□□ -0.53
CUX1-216ENST00000558469 GLRX3O76003 335 aaKnown RBP11.72□□□□□ -0.53
CUX1-216ENST00000558469 IL1R1P14778 569 aa11.72□□□□□ -0.53
CUX1-216ENST00000558469 MCAMP43121 646 aa11.72□□□□□ -0.53
CUX1-216ENST00000558469 SCARF1Q14162 830 aa11.72□□□□□ -0.53
CUX1-216ENST00000558469 TDRD7Q8NHU6 1098 aaKnown RBP11.72□□□□□ -0.53
CUX1-216ENST00000558469 ZNF512BQ96KM6 892 aaPredicted RBP11.72□□□□□ -0.53
CUX1-216ENST00000558469 DBNDD1Q9H9R9 158 aa11.72□□□□□ -0.53
CUX1-216ENST00000558469 SNRKQ9NRH2 765 aa11.72□□□□□ -0.53
CUX1-216ENST00000558469 NDUFB9Q9Y6M9 179 aa11.72□□□□□ -0.53
CUX1-216ENST00000558469 MAP4K4O95819 1239 aaPredicted RBP11.71□□□□□ -0.53
CUX1-216ENST00000558469 PRELPP51888 382 aa11.71□□□□□ -0.53
CUX1-216ENST00000558469 RASGRF1Q13972 1273 aa11.71□□□□□ -0.53
CUX1-216ENST00000558469 PI16Q6UXB8 463 aa11.71□□□□□ -0.53
CUX1-216ENST00000558469 NIM1KQ8IY84 436 aa11.71□□□□□ -0.53
CUX1-216ENST00000558469 SPATA5Q8NB90 893 aa11.71□□□□□ -0.53
CUX1-216ENST00000558469 PPIL4Q8WUA2 492 aaKnown RBP eCLIP11.71□□□□□ -0.53
CUX1-216ENST00000558469 DNAJC2Q99543 621 aaKnown RBP11.71□□□□□ -0.53
CUX1-216ENST00000558469 HMG20BQ9P0W2 317 aa11.71□□□□□ -0.53
CUX1-216ENST00000558469 DENND2AQ9ULE3 1009 aa11.71□□□□□ -0.53
CUX1-216ENST00000558469 TRIM6-TRIM34B2RNG4 842 aa11.7□□□□□ -0.54
CUX1-216ENST00000558469 SEMA3EO15041 775 aa11.7□□□□□ -0.54
CUX1-216ENST00000558469 GRIN3BO60391 1043 aa11.7□□□□□ -0.54
CUX1-216ENST00000558469 LMNB1P20700 586 aa11.7□□□□□ -0.54
CUX1-216ENST00000558469 ZAP70P43403 619 aa11.7□□□□□ -0.54
CUX1-216ENST00000558469 CHAF1AQ13111 956 aaPredicted RBP11.7□□□□□ -0.54
CUX1-216ENST00000558469 TTC22Q5TAA0 569 aa11.7□□□□□ -0.54
CUX1-216ENST00000558469 PODNQ7Z5L7 613 aa11.7□□□□□ -0.54
CUX1-216ENST00000558469 JDP2Q8WYK2 163 aa11.7□□□□□ -0.54
CUX1-216ENST00000558469 FBXW7Q969H0 707 aa11.7□□□□□ -0.54
CUX1-216ENST00000558469 HAUS7Q99871 368 aa11.7□□□□□ -0.54
CUX1-216ENST00000558469 KCNQ5Q9NR82 932 aa11.7□□□□□ -0.54
CUX1-216ENST00000558469 JAG2Q9Y219 1238 aa11.7□□□□□ -0.54
CUX1-216ENST00000558469 COL1A1P02452 1464 aaPredicted RBP11.7□□□□□ -0.54
CUX1-216ENST00000558469 MYH2Q9UKX2 1941 aa11.69□□□□□ -0.54
CUX1-216ENST00000558469 GOLIM4O00461 696 aa11.69□□□□□ -0.54
CUX1-216ENST00000558469 CYP2E1P05181 493 aaPredicted RBP11.69□□□□□ -0.54
CUX1-216ENST00000558469 GSPT1P15170 499 aaKnown RBP11.69□□□□□ -0.54
CUX1-216ENST00000558469 GTF2IP78347 998 aa11.69□□□□□ -0.54
CUX1-216ENST00000558469 RILPL2Q969X0 211 aa11.69□□□□□ -0.54
CUX1-216ENST00000558469 EDC3Q96F86 508 aaKnown RBP11.69□□□□□ -0.54
CUX1-216ENST00000558469 PAG1Q9NWQ8 432 aa11.69□□□□□ -0.54
CUX1-216ENST00000558469 UTRNP46939 3433 aa11.69□□□□□ -0.54
CUX1-216ENST00000558469 YDJCA8MPS7 323 aa11.68□□□□□ -0.54
CUX1-216ENST00000558469 TTLL5Q6EMB2 1281 aa11.68□□□□□ -0.54
CUX1-216ENST00000558469 TBC1D9Q6ZT07 1266 aa11.68□□□□□ -0.54
CUX1-216ENST00000558469 ANTXR1Q9H6X2 564 aa11.68□□□□□ -0.54
CUX1-216ENST00000558469 ZNRF3Q9ULT6 936 aa11.68□□□□□ -0.54
CUX1-216ENST00000558469 MAST2Q6P0Q8 1798 aa11.67□□□□□ -0.54
CUX1-216ENST00000558469 PDS5AQ29RF7 1337 aaKnown RBP11.67□□□□□ -0.54
CUX1-216ENST00000558469 FAM205AQ6ZU69 1335 aa11.67□□□□□ -0.54
CUX1-216ENST00000558469 USP17L3A6NCW0 530 aa11.67□□□□□ -0.54
CUX1-216ENST00000558469 USP17L4A6NCW7 530 aa11.67□□□□□ -0.54
CUX1-216ENST00000558469 RAD17O75943 681 aa11.67□□□□□ -0.54
CUX1-216ENST00000558469 PRR29P0C7W0 189 aa11.67□□□□□ -0.54
CUX1-216ENST00000558469 SDSP20132 328 aa11.67□□□□□ -0.54
CUX1-216ENST00000558469 TTF1Q15361 905 aaPredicted RBP11.67□□□□□ -0.54
CUX1-216ENST00000558469 USP17L1Q7RTZ2 530 aa11.67□□□□□ -0.54
CUX1-216ENST00000558469 CNTROBQ8N137 903 aa11.67□□□□□ -0.54
CUX1-216ENST00000558469 WDR66Q8TBY9 1149 aa11.67□□□□□ -0.54
CUX1-216ENST00000558469 EVI5LQ96CN4 794 aa11.67□□□□□ -0.54
CUX1-216ENST00000558469 RNF181Q9P0P0 153 aa11.67□□□□□ -0.54
CUX1-216ENST00000558469 ABCF2Q9UG63 623 aa11.67□□□□□ -0.54
CUX1-216ENST00000558469 BMP2KLQ5H9B9 411 aa11.66□□□□□ -0.54
CUX1-216ENST00000558469 MFSD14BQ5SR56 506 aa11.66□□□□□ -0.54
CUX1-216ENST00000558469 STRIP1Q5VSL9 837 aa11.66□□□□□ -0.54
CUX1-216ENST00000558469 C9orf131Q5VYM1 1079 aa11.66□□□□□ -0.54
CUX1-216ENST00000558469 MXD3Q9BW11 206 aa11.66□□□□□ -0.54
CUX1-216ENST00000558469 PIH1D3Q9NQM4 214 aaKnown RBP11.66□□□□□ -0.54
CUX1-216ENST00000558469 LRP2BPQ9P2M1 347 aa11.66□□□□□ -0.54
CUX1-216ENST00000558469 FZD9O00144 591 aa11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms