RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 AGXT2Q9BYV1 514 aa8.57□□□□□ -1.04
VPS13C-206ENST00000558338 DDX19AQ9NUU7 478 aaKnown RBP8.57□□□□□ -1.04
VPS13C-206ENST00000558338 BCL9O00512 1426 aa8.57□□□□□ -1.04
VPS13C-206ENST00000558338 ARAP2Q8WZ64 1704 aa8.56□□□□□ -1.04
VPS13C-206ENST00000558338 LRP5O75197 1615 aa8.56□□□□□ -1.04
VPS13C-206ENST00000558338 AHDC1Q5TGY3 1603 aaPredicted RBP8.56□□□□□ -1.04
VPS13C-206ENST00000558338 TIMM10P62072 90 aa8.56□□□□□ -1.04
VPS13C-206ENST00000558338 STK3Q13188 491 aa8.56□□□□□ -1.04
VPS13C-206ENST00000558338 DNAJC10Q8IXB1 793 aa8.56□□□□□ -1.04
VPS13C-206ENST00000558338 SMARCC2Q8TAQ2 1214 aa8.56□□□□□ -1.04
VPS13C-206ENST00000558338 ZNF512BQ96KM6 892 aaPredicted RBP8.56□□□□□ -1.04
VPS13C-206ENST00000558338 SPATA32Q96LK8 384 aa8.56□□□□□ -1.04
VPS13C-206ENST00000558338 TCEANC2Q96MN5 208 aa8.56□□□□□ -1.04
VPS13C-206ENST00000558338 SEC62Q99442 399 aaKnown RBP8.56□□□□□ -1.04
VPS13C-206ENST00000558338 DDX24Q9GZR7 859 aaKnown RBP eCLIP8.56□□□□□ -1.041e-6■■■■□ 21.2
VPS13C-206ENST00000558338 CFAP45Q9UL16 551 aa8.56□□□□□ -1.04
VPS13C-206ENST00000558338 ANKRD18BA2A2Z9 1011 aa8.55□□□□□ -1.04
VPS13C-206ENST00000558338 ERVV-1B6SEH8 477 aa8.55□□□□□ -1.04
VPS13C-206ENST00000558338 ATRNO75882 1429 aa8.55□□□□□ -1.04
VPS13C-206ENST00000558338 TPM2P07951 284 aa8.55□□□□□ -1.04
VPS13C-206ENST00000558338 HSPD1P10809 573 aaKnown RBP8.55□□□□□ -1.04
VPS13C-206ENST00000558338 TTF1Q15361 905 aaPredicted RBP8.55□□□□□ -1.04
VPS13C-206ENST00000558338 MAP3K11Q16584 847 aa8.55□□□□□ -1.04
VPS13C-206ENST00000558338 IMMTQ16891 758 aaKnown RBP8.55□□□□□ -1.04
VPS13C-206ENST00000558338 RIC1Q4ADV7 1423 aa8.55□□□□□ -1.04
VPS13C-206ENST00000558338 PIGBQ92521 554 aa8.55□□□□□ -1.04
VPS13C-206ENST00000558338 APPBP2Q92624 585 aa8.55□□□□□ -1.04
VPS13C-206ENST00000558338 BRF1Q92994 677 aa8.55□□□□□ -1.04
VPS13C-206ENST00000558338 ZNF274Q96GC6 653 aaPredicted RBP8.55□□□□□ -1.04
VPS13C-206ENST00000558338 XAGE2Q96GT9 111 aa8.55□□□□□ -1.04
VPS13C-206ENST00000558338 ZNF594Q96JF6 807 aaPredicted RBP8.55□□□□□ -1.04
VPS13C-206ENST00000558338 AK7Q96M32 723 aa8.55□□□□□ -1.04
VPS13C-206ENST00000558338 SGIP1Q9BQI5 828 aa8.55□□□□□ -1.04
VPS13C-206ENST00000558338 CDCA7Q9BWT1 371 aaPredicted RBP8.55□□□□□ -1.04
VPS13C-206ENST00000558338 NUP62CLQ9H1M0 184 aa8.55□□□□□ -1.04
VPS13C-206ENST00000558338 TAF6LQ9Y6J9 622 aa8.55□□□□□ -1.04
VPS13C-206ENST00000558338 NDUFB9Q9Y6M9 179 aa8.55□□□□□ -1.04
VPS13C-206ENST00000558338 CICQ96RK0 1608 aaPredicted RBP8.55□□□□□ -1.04
VPS13C-206ENST00000558338 WDR19Q8NEZ3 1342 aa8.55□□□□□ -1.04
VPS13C-206ENST00000558338 E7EWF7 191 aa8.55□□□□□ -1.04
VPS13C-206ENST00000558338 TPM3P06753 285 aa8.55□□□□□ -1.04
VPS13C-206ENST00000558338 PLCG2P16885 1265 aa8.55□□□□□ -1.04
VPS13C-206ENST00000558338 BRD2P25440 801 aaKnown RBP8.55□□□□□ -1.04
VPS13C-206ENST00000558338 TERF1P54274 439 aa8.55□□□□□ -1.04
VPS13C-206ENST00000558338 CTSWP56202 376 aa8.55□□□□□ -1.04
VPS13C-206ENST00000558338 EXOSC10Q01780 885 aaKnown RBP8.55□□□□□ -1.04
VPS13C-206ENST00000558338 RESTQ13127 1097 aa8.55□□□□□ -1.04
VPS13C-206ENST00000558338 ATP2B3Q16720 1220 aa8.55□□□□□ -1.04
VPS13C-206ENST00000558338 TTC6Q86TZ1 520 aa8.55□□□□□ -1.04
VPS13C-206ENST00000558338 FUCA2Q9BTY2 467 aa8.55□□□□□ -1.04
VPS13C-206ENST00000558338 BTG4Q9NY30 223 aa8.55□□□□□ -1.04
VPS13C-206ENST00000558338 ZNF330Q9Y3S2 320 aaPredicted RBP8.55□□□□□ -1.04
VPS13C-206ENST00000558338 DDX60Q8IY21 1712 aaKnown RBP8.54□□□□□ -1.04
VPS13C-206ENST00000558338 DOT1LQ8TEK3 1739 aa8.54□□□□□ -1.04
VPS13C-206ENST00000558338 COL16A1Q07092 1604 aaPredicted RBP8.54□□□□□ -1.04
VPS13C-206ENST00000558338 NUP98P52948 1817 aa8.54□□□□□ -1.04
VPS13C-206ENST00000558338 TESPA1A2RU30 521 aaPredicted RBP8.54□□□□□ -1.04
VPS13C-206ENST00000558338 DHX16O60231 1041 aaKnown RBP8.54□□□□□ -1.04
VPS13C-206ENST00000558338 OFD1O75665 1012 aa8.54□□□□□ -1.04
VPS13C-206ENST00000558338 HCLS1P14317 486 aaPredicted RBP8.54□□□□□ -1.04
VPS13C-206ENST00000558338 IL6STP40189 918 aaPredicted RBP8.54□□□□□ -1.04
VPS13C-206ENST00000558338 FKBP4Q02790 459 aaKnown RBP eCLIP8.54□□□□□ -1.04
VPS13C-206ENST00000558338 SCRN1Q12765 414 aa8.54□□□□□ -1.04
VPS13C-206ENST00000558338 METTL24Q5JXM2 366 aa8.54□□□□□ -1.04
VPS13C-206ENST00000558338 STOX1Q6ZVD7 989 aa8.54□□□□□ -1.04
VPS13C-206ENST00000558338 FERMT3Q86UX7 667 aa8.54□□□□□ -1.04
VPS13C-206ENST00000558338 NLRP10Q86W26 655 aa8.54□□□□□ -1.04
VPS13C-206ENST00000558338 NSUN7Q8NE18 718 aaKnown RBP8.54□□□□□ -1.04
VPS13C-206ENST00000558338 LEO1Q8WVC0 666 aaPredicted RBP8.54□□□□□ -1.04
VPS13C-206ENST00000558338 MARVELD3Q96A59 401 aa8.54□□□□□ -1.04
VPS13C-206ENST00000558338 ZNF396Q96N95 335 aaPredicted RBP8.54□□□□□ -1.04
VPS13C-206ENST00000558338 PUS3Q9BZE2 481 aaKnown RBP8.54□□□□□ -1.04
VPS13C-206ENST00000558338 ASAP1Q9ULH1 1129 aa8.54□□□□□ -1.04
VPS13C-206ENST00000558338 PCDHB13Q9Y5F0 798 aa8.54□□□□□ -1.04
VPS13C-206ENST00000558338 RREB1Q92766 1687 aa8.54□□□□□ -1.04
VPS13C-206ENST00000558338 PTPDC1A2A3K4 754 aa8.53□□□□□ -1.04
VPS13C-206ENST00000558338 M0R2C6 588 aa8.53□□□□□ -1.04
VPS13C-206ENST00000558338 SEMA3EO15041 775 aa8.53□□□□□ -1.04
VPS13C-206ENST00000558338 PDE8AO60658 829 aa8.53□□□□□ -1.04
VPS13C-206ENST00000558338 CAVIN2O95810 425 aa8.53□□□□□ -1.04
VPS13C-206ENST00000558338 UQCRFS1P1P0C7P4 283 aa8.53□□□□□ -1.04
VPS13C-206ENST00000558338 CYP19A1P11511 503 aaPredicted RBP8.53□□□□□ -1.04
VPS13C-206ENST00000558338 WASHC4Q2M389 1173 aa8.53□□□□□ -1.04
VPS13C-206ENST00000558338 FAM89AQ96GI7 184 aa8.53□□□□□ -1.04
VPS13C-206ENST00000558338 LAMB2P55268 1798 aa8.53□□□□□ -1.04
VPS13C-206ENST00000558338 ROBO1Q9Y6N7 1651 aa8.53□□□□□ -1.04
VPS13C-206ENST00000558338 NWD2Q9ULI1 1742 aa8.53□□□□□ -1.04
VPS13C-206ENST00000558338 GOLGA6L6A8MZA4 724 aa8.53□□□□□ -1.04
VPS13C-206ENST00000558338 EXOC5O00471 708 aa8.53□□□□□ -1.04
VPS13C-206ENST00000558338 IRS4O14654 1257 aaPredicted RBP8.53□□□□□ -1.04
VPS13C-206ENST00000558338 SNPHO15079 494 aa8.53□□□□□ -1.04
VPS13C-206ENST00000558338 JAK2O60674 1132 aa8.53□□□□□ -1.04
VPS13C-206ENST00000558338 KDM4AO75164 1064 aa8.53□□□□□ -1.04
VPS13C-206ENST00000558338 ITGA6P23229 1130 aa8.53□□□□□ -1.04
VPS13C-206ENST00000558338 EVCP57679 992 aa8.53□□□□□ -1.04
VPS13C-206ENST00000558338 KIAA2012Q0VF49 1180 aa8.53□□□□□ -1.04
VPS13C-206ENST00000558338 GIMAP6Q6P9H5 292 aa8.53□□□□□ -1.04
VPS13C-206ENST00000558338 LDHAL6AQ6ZMR3 332 aa8.53□□□□□ -1.04
VPS13C-206ENST00000558338 BARGINQ6ZT62 677 aa8.53□□□□□ -1.04
VPS13C-206ENST00000558338 RALYLQ86SE5 291 aaKnown RBP8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms