RNA–Protein interactions for RNA: ENST00000558117.1

RTF1-204, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 4

Gene RTF1, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-204ENST00000558117 PHACTR2O75167 634 aa9.95□□□□□ -0.82
RTF1-204ENST00000558117 CYP2E1P05181 493 aaPredicted RBP9.95□□□□□ -0.82
RTF1-204ENST00000558117 COL8A1P27658 744 aa9.95□□□□□ -0.82
RTF1-204ENST00000558117 AFF1P51825 1210 aaKnown RBP9.95□□□□□ -0.82
RTF1-204ENST00000558117 TTC9Q92623 222 aa9.95□□□□□ -0.82
RTF1-204ENST00000558117 CNTN3Q9P232 1028 aa9.95□□□□□ -0.82
RTF1-204ENST00000558117 C1orf127Q8N9H9 656 aa9.94□□□□□ -0.82
RTF1-204ENST00000558117 TMC1Q8TDI8 760 aa9.94□□□□□ -0.82
RTF1-204ENST00000558117 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP9.94□□□□□ -0.82
RTF1-204ENST00000558117 SETD1AO15047 1707 aaKnown RBP9.93□□□□□ -0.82
RTF1-204ENST00000558117 FHOD3Q2V2M9 1422 aa9.93□□□□□ -0.82
RTF1-204ENST00000558117 SMNDC1O75940 238 aaKnown RBP eCLIP9.93□□□□□ -0.82
RTF1-204ENST00000558117 KIF4AO95239 1232 aa9.93□□□□□ -0.82
RTF1-204ENST00000558117 SPATA31C1P0DKV0 1188 aa9.93□□□□□ -0.82
RTF1-204ENST00000558117 RAC1P63000 192 aa9.93□□□□□ -0.82
RTF1-204ENST00000558117 TRIM28Q13263 835 aaKnown RBP9.93□□□□□ -0.82
RTF1-204ENST00000558117 PDE3BQ13370 1112 aa9.93□□□□□ -0.82
RTF1-204ENST00000558117 COL13A1Q5TAT6 717 aaPredicted RBP9.93□□□□□ -0.82
RTF1-204ENST00000558117 WFDC8Q8IUA0 241 aa9.93□□□□□ -0.82
RTF1-204ENST00000558117 GZF1Q9H116 711 aaPredicted RBP9.93□□□□□ -0.82
RTF1-204ENST00000558117 TNFRSF21O75509 655 aa9.92□□□□□ -0.82
RTF1-204ENST00000558117 IGHA2P01877 340 aa9.92□□□□□ -0.82
RTF1-204ENST00000558117 COL9A3Q14050 684 aaPredicted RBP9.92□□□□□ -0.82
RTF1-204ENST00000558117 MSL1Q68DK7 614 aa9.92□□□□□ -0.82
RTF1-204ENST00000558117 GDF6Q6KF10 455 aaPredicted RBP9.92□□□□□ -0.82
RTF1-204ENST00000558117 FAM129BQ96TA1 746 aa9.92□□□□□ -0.82
RTF1-204ENST00000558117 FOXD3Q9UJU5 478 aaPredicted RBP9.92□□□□□ -0.82
RTF1-204ENST00000558117 DCTN4Q9UJW0 460 aa9.92□□□□□ -0.82
RTF1-204ENST00000558117 ALKQ9UM73 1620 aa9.92□□□□□ -0.82
RTF1-204ENST00000558117 BIVM-ERCC5R4GMW8 1640 aa9.92□□□□□ -0.82
RTF1-204ENST00000558117 NEFLP07196 543 aa9.91□□□□□ -0.82
RTF1-204ENST00000558117 MAPK1P28482 360 aa9.91□□□□□ -0.82
RTF1-204ENST00000558117 CITED4Q96RK1 184 aa9.91□□□□□ -0.82
RTF1-204ENST00000558117 RBCK1Q9BYM8 510 aa9.91□□□□□ -0.82
RTF1-204ENST00000558117 CHRDQ9H2X0 955 aa9.91□□□□□ -0.82
RTF1-204ENST00000558117 DENND4BO75064 1496 aaPredicted RBP9.91□□□□□ -0.82
RTF1-204ENST00000558117 FAM177BA6PVY3 158 aa9.9□□□□□ -0.82
RTF1-204ENST00000558117 FAM229AH3BQW9 127 aa9.9□□□□□ -0.82
RTF1-204ENST00000558117 APBA3O96018 575 aa9.9□□□□□ -0.82
RTF1-204ENST00000558117 ATP11AP98196 1134 aa9.9□□□□□ -0.82
RTF1-204ENST00000558117 GRIK5Q16478 980 aa9.9□□□□□ -0.82
RTF1-204ENST00000558117 CEP135Q66GS9 1140 aa9.9□□□□□ -0.82
RTF1-204ENST00000558117 SND1Q7KZF4 910 aaKnown RBP eCLIP9.9□□□□□ -0.82
RTF1-204ENST00000558117 DMRTC2Q8IXT2 367 aaPredicted RBP9.9□□□□□ -0.82
RTF1-204ENST00000558117 KIAA0556O60303 1618 aa9.89□□□□□ -0.83
RTF1-204ENST00000558117 ABCA9Q8IUA7 1624 aa9.89□□□□□ -0.83
RTF1-204ENST00000558117 IQGAP2Q13576 1575 aa9.89□□□□□ -0.83
RTF1-204ENST00000558117 GPR182O15218 404 aa9.89□□□□□ -0.83
RTF1-204ENST00000558117 TMC7Q7Z402 723 aa9.89□□□□□ -0.83
RTF1-204ENST00000558117 CACTIN-AS1Q8N1I8 211 aa9.89□□□□□ -0.83
RTF1-204ENST00000558117 RASSF4Q9H2L5 321 aa9.89□□□□□ -0.83
RTF1-204ENST00000558117 TRIM33Q9UPN9 1127 aa9.89□□□□□ -0.83
RTF1-204ENST00000558117 AMOTL2Q9Y2J4 779 aa9.89□□□□□ -0.83
RTF1-204ENST00000558117 ZFYVE16Q7Z3T8 1539 aa9.88□□□□□ -0.83
RTF1-204ENST00000558117 A0A0A0MRY4 1105 aa9.88□□□□□ -0.83
RTF1-204ENST00000558117 KRBA1A5PL33 1030 aa9.88□□□□□ -0.83
RTF1-204ENST00000558117 EDN3P14138 238 aa9.88□□□□□ -0.83
RTF1-204ENST00000558117 NACC1Q96RE7 527 aa9.88□□□□□ -0.83
RTF1-204ENST00000558117 NIF3L1Q9GZT8 377 aa9.88□□□□□ -0.83
RTF1-204ENST00000558117 SALL4Q9UJQ4 1053 aa9.88□□□□□ -0.83
RTF1-204ENST00000558117 CAMSAP1Q5T5Y3 1602 aa9.88□□□□□ -0.83
RTF1-204ENST00000558117 TRAPPC8Q9Y2L5 1435 aa9.88□□□□□ -0.83
RTF1-204ENST00000558117 RICTORQ6R327 1708 aa9.87□□□□□ -0.83
RTF1-204ENST00000558117 ZMYM4Q5VZL5 1548 aa9.87□□□□□ -0.83
RTF1-204ENST00000558117 EREGO14944 169 aa9.87□□□□□ -0.83
RTF1-204ENST00000558117 PLA2G4EQ3MJ16 856 aa9.87□□□□□ -0.83
RTF1-204ENST00000558117 GPAT2Q6NUI2 795 aa9.87□□□□□ -0.83
RTF1-204ENST00000558117 DTWD1Q8N5C7 304 aa9.87□□□□□ -0.83
RTF1-204ENST00000558117 IL22RA1Q8N6P7 574 aa9.87□□□□□ -0.83
RTF1-204ENST00000558117 CEP120Q8N960 986 aa9.87□□□□□ -0.83
RTF1-204ENST00000558117 PBX4Q9BYU1 374 aa9.87□□□□□ -0.83
RTF1-204ENST00000558117 MAGI2Q86UL8 1455 aa9.86□□□□□ -0.83
RTF1-204ENST00000558117 DMRTB1Q96MA1 342 aa9.86□□□□□ -0.83
RTF1-204ENST00000558117 LACRTQ9GZZ8 138 aa9.86□□□□□ -0.83
RTF1-204ENST00000558117 ZFYVE28Q9HCC9 887 aa9.86□□□□□ -0.83
RTF1-204ENST00000558117 EFCAB5A4FU69 1503 aa9.86□□□□□ -0.83
RTF1-204ENST00000558117 PTPRKQ15262 1439 aa9.85□□□□□ -0.83
RTF1-204ENST00000558117 PTPRAP18433 802 aa9.85□□□□□ -0.83
RTF1-204ENST00000558117 ORC1Q13415 861 aa9.85□□□□□ -0.83
RTF1-204ENST00000558117 FMR1NBQ8N0W7 255 aaPredicted RBP9.85□□□□□ -0.83
RTF1-204ENST00000558117 MUC3BQ9H195 1237 aa9.85□□□□□ -0.83
RTF1-204ENST00000558117 UGGT2Q9NYU1 1516 aa9.85□□□□□ -0.83
RTF1-204ENST00000558117 ABCA8O94911 1581 aa9.84□□□□□ -0.83
RTF1-204ENST00000558117 POLR3DP05423 398 aaPredicted RBP9.84□□□□□ -0.83
RTF1-204ENST00000558117 ACPPP15309 386 aa9.84□□□□□ -0.83
RTF1-204ENST00000558117 ELNP15502 786 aa9.84□□□□□ -0.83
RTF1-204ENST00000558117 CDC27P30260 824 aa9.84□□□□□ -0.83
RTF1-204ENST00000558117 TRIM26Q12899 539 aaPredicted RBP9.84□□□□□ -0.83
RTF1-204ENST00000558117 USPL1Q5W0Q7 1092 aa9.84□□□□□ -0.83
RTF1-204ENST00000558117 ZBTB7CA1YPR0 619 aa9.83□□□□□ -0.84
RTF1-204ENST00000558117 IGHA1P01876 353 aa9.83□□□□□ -0.84
RTF1-204ENST00000558117 DCAF11Q8TEB1 546 aa9.83□□□□□ -0.84
RTF1-204ENST00000558117 OSMRQ99650 979 aa9.83□□□□□ -0.84
RTF1-204ENST00000558117 DZANK1Q9NVP4 752 aa9.83□□□□□ -0.84
RTF1-204ENST00000558117 PPME1Q9Y570 386 aa9.83□□□□□ -0.84
RTF1-204ENST00000558117 CPS1P31327 1500 aa9.82□□□□□ -0.84
RTF1-204ENST00000558117 PDE2AO00408 941 aaPredicted RBP9.82□□□□□ -0.84
RTF1-204ENST00000558117 CPNE3O75131 537 aaKnown RBP9.82□□□□□ -0.84
RTF1-204ENST00000558117 CABP4P57796 275 aa9.82□□□□□ -0.84
RTF1-204ENST00000558117 DSC3Q14574 896 aa9.82□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 195 ms