RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 FAM160A1Q05DH4 1040 aa14.38□□□□□ -0.11
LDLR-205ENST00000557933 FEZ1Q99689 392 aa14.38□□□□□ -0.11
LDLR-205ENST00000557933 DDX21Q9NR30 783 aaKnown RBP eCLIP14.38□□□□□ -0.11
LDLR-205ENST00000557933 E7EWF7 191 aa14.37□□□□□ -0.11
LDLR-205ENST00000557933 ANKRD13DQ6ZTN6 518 aa14.37□□□□□ -0.11
LDLR-205ENST00000557933 PUS3Q9BZE2 481 aaKnown RBP14.37□□□□□ -0.11
LDLR-205ENST00000557933 ZCCHC17Q9NP64 241 aaKnown RBP14.37□□□□□ -0.11
LDLR-205ENST00000557933 PARP4Q9UKK3 1724 aaKnown RBP14.37□□□□□ -0.11
LDLR-205ENST00000557933 PDIA3P30101 505 aaKnown RBP14.37□□□□□ -0.11
LDLR-205ENST00000557933 GYS2P54840 703 aa14.37□□□□□ -0.11
LDLR-205ENST00000557933 ARHGAP29Q52LW3 1261 aa14.37□□□□□ -0.11
LDLR-205ENST00000557933 DHX32Q7L7V1 743 aaKnown RBP14.37□□□□□ -0.11
LDLR-205ENST00000557933 KRT222Q8N1A0 295 aa14.37□□□□□ -0.11
LDLR-205ENST00000557933 CABLES1Q8TDN4 633 aa14.37□□□□□ -0.11
LDLR-205ENST00000557933 PPP1R13BQ96KQ4 1090 aa14.37□□□□□ -0.11
LDLR-205ENST00000557933 ANO10Q9NW15 660 aa14.37□□□□□ -0.11
LDLR-205ENST00000557933 HMG20BQ9P0W2 317 aa14.37□□□□□ -0.11
LDLR-205ENST00000557933 KIF28PB7ZC32 967 aa14.36□□□□□ -0.11
LDLR-205ENST00000557933 ZNF790Q6PG37 636 aa14.36□□□□□ -0.11
LDLR-205ENST00000557933 ARHGAP30Q7Z6I6 1101 aaPredicted RBP14.36□□□□□ -0.11
LDLR-205ENST00000557933 CCDC82Q8N4S0 544 aa14.36□□□□□ -0.11
LDLR-205ENST00000557933 ZNF397Q8NF99 534 aaPredicted RBP14.36□□□□□ -0.11
LDLR-205ENST00000557933 ENGASEQ8NFI3 743 aa14.36□□□□□ -0.11
LDLR-205ENST00000557933 ZBTB3Q9H5J0 574 aa14.36□□□□□ -0.11
LDLR-205ENST00000557933 RCOR1Q9UKL0 485 aa14.36□□□□□ -0.11
LDLR-205ENST00000557933 TMEM232C9JQI7 657 aa14.36□□□□□ -0.11
LDLR-205ENST00000557933 TERF2Q15554 542 aa14.36□□□□□ -0.11
LDLR-205ENST00000557933 MRFAP1L1Q96HT8 127 aa14.36□□□□□ -0.11
LDLR-205ENST00000557933 CLIC6Q96NY7 704 aa14.36□□□□□ -0.11
LDLR-205ENST00000557933 M0R2C6 588 aa14.35□□□□□ -0.11
LDLR-205ENST00000557933 FANCGO15287 622 aa14.35□□□□□ -0.11
LDLR-205ENST00000557933 SLU7O95391 586 aaKnown RBP14.35□□□□□ -0.11
LDLR-205ENST00000557933 HSPD1P10809 573 aaKnown RBP14.35□□□□□ -0.11
LDLR-205ENST00000557933 ATP2B1P20020 1258 aa14.35□□□□□ -0.11
LDLR-205ENST00000557933 SFPQP23246 707 aaKnown RBP eCLIP14.35□□□□□ -0.11
LDLR-205ENST00000557933 BBXQ8WY36 941 aaPredicted RBP14.35□□□□□ -0.11
LDLR-205ENST00000557933 MRPS27Q92552 414 aaKnown RBP14.35□□□□□ -0.11
LDLR-205ENST00000557933 CCDC34Q96HJ3 373 aa14.35□□□□□ -0.11
LDLR-205ENST00000557933 MYL10Q9BUA6 226 aa14.35□□□□□ -0.11
LDLR-205ENST00000557933 ZSCAN16Q9H4T2 348 aaPredicted RBP14.35□□□□□ -0.11
LDLR-205ENST00000557933 INCENPQ9NQS7 918 aa14.35□□□□□ -0.11
LDLR-205ENST00000557933 PFKFB2O60825 505 aa14.35□□□□□ -0.11
LDLR-205ENST00000557933 URI1O94763 535 aaPredicted RBP14.35□□□□□ -0.11
LDLR-205ENST00000557933 CHRNA2Q15822 529 aa14.35□□□□□ -0.11
LDLR-205ENST00000557933 UTP14AQ9BVJ6 771 aaKnown RBP14.35□□□□□ -0.11
LDLR-205ENST00000557933 U3KPZ7 1027 aaPredicted RBP14.35□□□□□ -0.11
LDLR-205ENST00000557933 ATP5JP18859 108 aa14.35□□□□□ -0.11
LDLR-205ENST00000557933 KRT32Q14532 448 aa14.35□□□□□ -0.11
LDLR-205ENST00000557933 PAG1Q9NWQ8 432 aa14.35□□□□□ -0.11
LDLR-205ENST00000557933 NWD2Q9ULI1 1742 aa14.34□□□□□ -0.11
LDLR-205ENST00000557933 KLF18A0A0U1RQI7 1052 aa14.34□□□□□ -0.11
LDLR-205ENST00000557933 GOLGA8BA8MQT2 603 aa14.34□□□□□ -0.11
LDLR-205ENST00000557933 CLCN6P51797 869 aa14.34□□□□□ -0.11
LDLR-205ENST00000557933 GNL2Q13823 731 aaKnown RBP14.34□□□□□ -0.11
LDLR-205ENST00000557933 ZNF827Q17R98 1081 aa14.34□□□□□ -0.11
LDLR-205ENST00000557933 FMR1NBQ8N0W7 255 aaPredicted RBP14.34□□□□□ -0.11
LDLR-205ENST00000557933 PDILTQ8N807 584 aa14.34□□□□□ -0.11
LDLR-205ENST00000557933 PHKBQ93100 1093 aa14.34□□□□□ -0.11
LDLR-205ENST00000557933 WNK3Q9BYP7 1800 aa14.34□□□□□ -0.11
LDLR-205ENST00000557933 CARMIL3Q8ND23 1372 aa14.34□□□□□ -0.11
LDLR-205ENST00000557933 FOXN1O15353 648 aa14.34□□□□□ -0.11
LDLR-205ENST00000557933 PNOCQ13519 176 aa14.34□□□□□ -0.11
LDLR-205ENST00000557933 USPL1Q5W0Q7 1092 aa14.34□□□□□ -0.11
LDLR-205ENST00000557933 NEK11Q8NG66 645 aa14.34□□□□□ -0.11
LDLR-205ENST00000557933 SMARCC2Q8TAQ2 1214 aa14.34□□□□□ -0.11
LDLR-205ENST00000557933 MROH7-TTC4A0A0A0MT08 1334 aa14.33□□□□□ -0.12
LDLR-205ENST00000557933 MAST3O60307 1309 aa14.33□□□□□ -0.12
LDLR-205ENST00000557933 HOXB7P09629 217 aa14.33□□□□□ -0.12
LDLR-205ENST00000557933 CSB-PGBD3P0DP91 1061 aa14.33□□□□□ -0.12
LDLR-205ENST00000557933 RFX5P48382 616 aaPredicted RBP14.33□□□□□ -0.12
LDLR-205ENST00000557933 CFAP100Q494V2 611 aa14.33□□□□□ -0.12
LDLR-205ENST00000557933 OSBP2Q969R2 916 aa14.33□□□□□ -0.12
LDLR-205ENST00000557933 C8orf76Q96K31 380 aa14.33□□□□□ -0.12
LDLR-205ENST00000557933 BABAM1Q9NWV8 329 aa14.33□□□□□ -0.12
LDLR-205ENST00000557933 ORC3Q9UBD5 711 aaPredicted RBP14.33□□□□□ -0.12
LDLR-205ENST00000557933 MORC2Q9Y6X9 1032 aaPredicted RBP14.33□□□□□ -0.12
LDLR-205ENST00000557933 SLC3A2P08195 630 aaKnown RBP14.33□□□□□ -0.12
LDLR-205ENST00000557933 ADORA1P30542 326 aa14.33□□□□□ -0.12
LDLR-205ENST00000557933 SENP2Q9HC62 589 aa14.33□□□□□ -0.12
LDLR-205ENST00000557933 KIAA1468Q9P260 1216 aa14.33□□□□□ -0.12
LDLR-205ENST00000557933 NRAPQ86VF7 1730 aa14.32□□□□□ -0.12
LDLR-205ENST00000557933 CPLX1O14810 134 aa14.32□□□□□ -0.12
LDLR-205ENST00000557933 WDHD1O75717 1129 aaPredicted RBP14.32□□□□□ -0.12
LDLR-205ENST00000557933 ZNF202O95125 648 aa14.32□□□□□ -0.12
LDLR-205ENST00000557933 SERPINC1P01008 464 aa14.32□□□□□ -0.12
LDLR-205ENST00000557933 TFRCP02786 760 aaKnown RBP14.32□□□□□ -0.12
LDLR-205ENST00000557933 TTLL7Q6ZT98 887 aa14.32□□□□□ -0.12
LDLR-205ENST00000557933 KBTBD3Q8NAB2 608 aa14.32□□□□□ -0.12
LDLR-205ENST00000557933 CARD6Q9BX69 1037 aa14.32□□□□□ -0.12
LDLR-205ENST00000557933 COBLO75128 1261 aa14.32□□□□□ -0.12
LDLR-205ENST00000557933 ZNF396Q96N95 335 aaPredicted RBP14.32□□□□□ -0.12
LDLR-205ENST00000557933 DESI2Q9BSY9 194 aa14.32□□□□□ -0.12
LDLR-205ENST00000557933 METTL22Q9BUU2 404 aaPredicted RBP14.32□□□□□ -0.12
LDLR-205ENST00000557933 IRX2Q9BZI1 471 aaPredicted RBP14.32□□□□□ -0.12
LDLR-205ENST00000557933 SIPA1L3O60292 1781 aaPredicted RBP14.32□□□□□ -0.12
LDLR-205ENST00000557933 TOM1O60784 492 aa14.31□□□□□ -0.12
LDLR-205ENST00000557933 IFIT1P09914 478 aaKnown RBP14.31□□□□□ -0.12
LDLR-205ENST00000557933 PFKFB1P16118 471 aa14.31□□□□□ -0.12
LDLR-205ENST00000557933 SCARF1Q14162 830 aa14.31□□□□□ -0.12
LDLR-205ENST00000557933 SARM1Q6SZW1 724 aa14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms