RNA–Protein interactions for RNA: ENST00000557507.1

CCDC88C-214, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 429 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-214ENST00000557507 AK9Q5TCS8 1911 aa10.52□□□□□ -0.73
CCDC88C-214ENST00000557507 CLRN2A0PK11 232 aa10.51□□□□□ -0.73
CCDC88C-214ENST00000557507 SNAP23O00161 211 aa10.51□□□□□ -0.73
CCDC88C-214ENST00000557507 APAF1O14727 1248 aa10.51□□□□□ -0.73
CCDC88C-214ENST00000557507 EN2P19622 333 aaPredicted RBP10.51□□□□□ -0.73
CCDC88C-214ENST00000557507 ITGA6P23229 1130 aa10.51□□□□□ -0.73
CCDC88C-214ENST00000557507 IGHMBP2P38935 993 aaKnown RBP10.51□□□□□ -0.73
CCDC88C-214ENST00000557507 MMP14P50281 582 aa10.51□□□□□ -0.73
CCDC88C-214ENST00000557507 CCDC30Q5VVM6 783 aa10.51□□□□□ -0.73
CCDC88C-214ENST00000557507 INTS3Q68E01 1043 aaKnown RBP10.51□□□□□ -0.73
CCDC88C-214ENST00000557507 ARMC5Q96C12 935 aa10.51□□□□□ -0.73
CCDC88C-214ENST00000557507 SLC10A4Q96EP9 437 aa10.51□□□□□ -0.73
CCDC88C-214ENST00000557507 ERO1AQ96HE7 468 aa10.51□□□□□ -0.73
CCDC88C-214ENST00000557507 CD209Q9NNX6 404 aa10.51□□□□□ -0.73
CCDC88C-214ENST00000557507 H7C1W4 665 aa10.5□□□□□ -0.73
CCDC88C-214ENST00000557507 FXR1P51114 621 aaKnown RBP eCLIP10.5□□□□□ -0.73
CCDC88C-214ENST00000557507 CASP7P55210 303 aa10.5□□□□□ -0.73
CCDC88C-214ENST00000557507 INHBEP58166 350 aa10.5□□□□□ -0.73
CCDC88C-214ENST00000557507 CHRNDQ07001 517 aa10.5□□□□□ -0.73
CCDC88C-214ENST00000557507 DLGAP5Q15398 846 aa10.5□□□□□ -0.73
CCDC88C-214ENST00000557507 NBPF12Q5TAG4 269 aaPredicted RBP10.5□□□□□ -0.73
CCDC88C-214ENST00000557507 G2E3Q7L622 706 aa10.5□□□□□ -0.73
CCDC88C-214ENST00000557507 MTMR14Q8NCE2 650 aa10.5□□□□□ -0.73
CCDC88C-214ENST00000557507 PLA2G12BQ9BX93 195 aa10.5□□□□□ -0.73
CCDC88C-214ENST00000557507 ANKRD2Q9GZV1 360 aa10.5□□□□□ -0.73
CCDC88C-214ENST00000557507 PPP2R3BQ9Y5P8 575 aa10.5□□□□□ -0.73
CCDC88C-214ENST00000557507 ALPK3Q96L96 1907 aa10.49□□□□□ -0.73
CCDC88C-214ENST00000557507 SPDYE2BA6NHP3 402 aa10.49□□□□□ -0.73
CCDC88C-214ENST00000557507 F8W031 263 aaPredicted RBP10.49□□□□□ -0.73
CCDC88C-214ENST00000557507 PPP1R12BO60237 982 aaPredicted RBP10.49□□□□□ -0.73
CCDC88C-214ENST00000557507 SPDYE6P0CI01 402 aa10.49□□□□□ -0.73
CCDC88C-214ENST00000557507 KCNJ4P48050 445 aa10.49□□□□□ -0.73
CCDC88C-214ENST00000557507 NEXNQ0ZGT2 675 aa10.49□□□□□ -0.73
CCDC88C-214ENST00000557507 CFAP100Q494V2 611 aa10.49□□□□□ -0.73
CCDC88C-214ENST00000557507 TSR2Q969E8 191 aaKnown RBP10.49□□□□□ -0.73
CCDC88C-214ENST00000557507 PTPN18Q99952 460 aa10.49□□□□□ -0.73
CCDC88C-214ENST00000557507 EFCC1Q9HA90 598 aa10.49□□□□□ -0.73
CCDC88C-214ENST00000557507 VEZTQ9HBM0 779 aa10.49□□□□□ -0.73
CCDC88C-214ENST00000557507 JAG2Q9Y219 1238 aa10.49□□□□□ -0.73
CCDC88C-214ENST00000557507 RANBP2P49792 3224 aaKnown RBP10.48□□□□□ -0.73
CCDC88C-214ENST00000557507 TAF5LO75529 589 aa10.48□□□□□ -0.73
CCDC88C-214ENST00000557507 USP2O75604 605 aaPredicted RBP10.48□□□□□ -0.73
CCDC88C-214ENST00000557507 CALD1Q05682 793 aaKnown RBP10.48□□□□□ -0.73
CCDC88C-214ENST00000557507 DDX10Q13206 875 aaKnown RBP10.48□□□□□ -0.73
CCDC88C-214ENST00000557507 GCKRQ14397 625 aa10.48□□□□□ -0.73
CCDC88C-214ENST00000557507 CDAN1Q8IWY9 1227 aa10.48□□□□□ -0.73
CCDC88C-214ENST00000557507 HELBQ8NG08 1087 aaPredicted RBP10.48□□□□□ -0.73
CCDC88C-214ENST00000557507 PRMT6Q96LA8 375 aaPredicted RBP10.48□□□□□ -0.73
CCDC88C-214ENST00000557507 MPHOSPH8Q99549 860 aa10.48□□□□□ -0.73
CCDC88C-214ENST00000557507 PTPRFP10586 1907 aa10.48□□□□□ -0.73
CCDC88C-214ENST00000557507 DOCK3Q8IZD9 2030 aa10.48□□□□□ -0.73
CCDC88C-214ENST00000557507 TESPA1A2RU30 521 aaPredicted RBP10.47□□□□□ -0.73
CCDC88C-214ENST00000557507 CSF1RP07333 972 aa10.47□□□□□ -0.73
CCDC88C-214ENST00000557507 IL1R1P14778 569 aa10.47□□□□□ -0.73
CCDC88C-214ENST00000557507 IREB2P48200 963 aaKnown RBP10.47□□□□□ -0.73
CCDC88C-214ENST00000557507 SP3Q02447 781 aa10.47□□□□□ -0.73
CCDC88C-214ENST00000557507 C15orf52Q6ZUT6 534 aaKnown RBP10.47□□□□□ -0.73
CCDC88C-214ENST00000557507 CNKSR2Q8WXI2 1034 aa10.47□□□□□ -0.73
CCDC88C-214ENST00000557507 OPTNQ96CV9 577 aa10.47□□□□□ -0.73
CCDC88C-214ENST00000557507 ZNF333Q96JL9 665 aa10.47□□□□□ -0.73
CCDC88C-214ENST00000557507 ELP3Q9H9T3 547 aa10.47□□□□□ -0.73
CCDC88C-214ENST00000557507 ZNF316A6NFI3 1004 aaPredicted RBP10.46□□□□□ -0.73
CCDC88C-214ENST00000557507 UNCXA6NJT0 531 aa10.46□□□□□ -0.73
CCDC88C-214ENST00000557507 MYO1BO43795 1136 aa10.46□□□□□ -0.73
CCDC88C-214ENST00000557507 RASA3Q14644 834 aa10.46□□□□□ -0.73
CCDC88C-214ENST00000557507 SUPT20HL1Q3ZLR7 823 aa10.46□□□□□ -0.73
CCDC88C-214ENST00000557507 OTUD7BQ6GQQ9 843 aa10.46□□□□□ -0.73
CCDC88C-214ENST00000557507 ANKRD13AQ8IZ07 590 aa10.46□□□□□ -0.73
CCDC88C-214ENST00000557507 BRI3BPQ8WY22 251 aa10.46□□□□□ -0.73
CCDC88C-214ENST00000557507 MS4A4AQ96JQ5 239 aa10.46□□□□□ -0.73
CCDC88C-214ENST00000557507 STK31Q9BXU1 1019 aa10.46□□□□□ -0.73
CCDC88C-214ENST00000557507 COLQQ9Y215 455 aaPredicted RBP10.46□□□□□ -0.73
CCDC88C-214ENST00000557507 PTCH2Q9Y6C5 1203 aa10.46□□□□□ -0.73
CCDC88C-214ENST00000557507 DOCK2Q92608 1830 aa10.46□□□□□ -0.74
CCDC88C-214ENST00000557507 CUL9Q8IWT3 2517 aa10.46□□□□□ -0.74
CCDC88C-214ENST00000557507 ANKRD18BA2A2Z9 1011 aa10.45□□□□□ -0.74
CCDC88C-214ENST00000557507 FKBP1AP62942 108 aaKnown RBP10.45□□□□□ -0.74
CCDC88C-214ENST00000557507 FLIIQ13045 1269 aa10.45□□□□□ -0.74
CCDC88C-214ENST00000557507 SPDYE2Q495Y8 402 aa10.45□□□□□ -0.74
CCDC88C-214ENST00000557507 PPP1R3FQ6ZSY5 799 aaPredicted RBP10.45□□□□□ -0.74
CCDC88C-214ENST00000557507 ZNF804AQ7Z570 1209 aa10.45□□□□□ -0.74
CCDC88C-214ENST00000557507 TEPSINQ96N21 525 aa10.45□□□□□ -0.74
CCDC88C-214ENST00000557507 MYCP01106 439 aaPredicted RBP10.44□□□□□ -0.74
CCDC88C-214ENST00000557507 SLC4A2P04920 1241 aa10.44□□□□□ -0.74
CCDC88C-214ENST00000557507 RBM5P52756 815 aaKnown RBP eCLIP10.44□□□□□ -0.74
CCDC88C-214ENST00000557507 FOXO4P98177 505 aa10.44□□□□□ -0.74
CCDC88C-214ENST00000557507 VGLL4Q14135 290 aa10.44□□□□□ -0.74
CCDC88C-214ENST00000557507 TAF1CQ15572 869 aaPredicted RBP10.44□□□□□ -0.74
CCDC88C-214ENST00000557507 TWISTNBQ3B726 338 aaPredicted RBP10.44□□□□□ -0.74
CCDC88C-214ENST00000557507 SLC9C1Q4G0N8 1177 aa10.44□□□□□ -0.74
CCDC88C-214ENST00000557507 FAM43AQ8N2R8 423 aa10.44□□□□□ -0.74
CCDC88C-214ENST00000557507 DNAAF4Q8WXU2 420 aa10.44□□□□□ -0.74
CCDC88C-214ENST00000557507 TMEM106CQ9BVX2 250 aa10.44□□□□□ -0.74
CCDC88C-214ENST00000557507 CHMP4AQ9BY43 222 aa10.44□□□□□ -0.74
CCDC88C-214ENST00000557507 ARHGAP39Q9C0H5 1083 aa10.44□□□□□ -0.74
CCDC88C-214ENST00000557507 MYH16Q9H6N6 1097 aa10.44□□□□□ -0.74
CCDC88C-214ENST00000557507 ZNF70Q9UC06 446 aaPredicted RBP10.44□□□□□ -0.74
CCDC88C-214ENST00000557507 FAM205AQ6ZU69 1335 aa10.43□□□□□ -0.74
CCDC88C-214ENST00000557507 PHIPQ8WWQ0 1821 aa10.43□□□□□ -0.74
CCDC88C-214ENST00000557507 CCL15-CCL14A0A0B4J2E2 113 aa10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms