RNA–Protein interactions for RNA: ENST00000557307.1

SYNE2-227, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 4

Gene SYNE2, Length 526 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-227ENST00000557307 MYO3BQ8WXR4 1341 aa13.81□□□□□ -0.2
SYNE2-227ENST00000557307 UBE2Q2LH0YL09 131 aa13.8□□□□□ -0.2
SYNE2-227ENST00000557307 IL1R1P14778 569 aa13.8□□□□□ -0.2
SYNE2-227ENST00000557307 GYG1P46976 350 aa13.8□□□□□ -0.2
SYNE2-227ENST00000557307 ZNF157P51786 506 aaPredicted RBP13.8□□□□□ -0.2
SYNE2-227ENST00000557307 GRIK5Q16478 980 aa13.8□□□□□ -0.2
SYNE2-227ENST00000557307 RABL6Q3YEC7 729 aaPredicted RBP13.8□□□□□ -0.2
SYNE2-227ENST00000557307 TAF7LQ5H9L4 462 aa13.8□□□□□ -0.2
SYNE2-227ENST00000557307 NOGQ13253 232 aa13.79□□□□□ -0.2
SYNE2-227ENST00000557307 PRKG1Q13976 671 aa13.79□□□□□ -0.2
SYNE2-227ENST00000557307 USP44Q9H0E7 712 aa13.79□□□□□ -0.2
SYNE2-227ENST00000557307 RIPOR2Q9Y4F9 1068 aa13.79□□□□□ -0.2
SYNE2-227ENST00000557307 ZNF804AQ7Z570 1209 aa13.78□□□□□ -0.2
SYNE2-227ENST00000557307 VGLL2Q8N8G2 317 aa13.78□□□□□ -0.2
SYNE2-227ENST00000557307 ABHD8Q96I13 439 aa13.78□□□□□ -0.2
SYNE2-227ENST00000557307 BEGAINQ9BUH8 593 aa13.78□□□□□ -0.2
SYNE2-227ENST00000557307 IQSEC3Q9UPP2 1182 aaPredicted RBP13.78□□□□□ -0.2
SYNE2-227ENST00000557307 PTPRCP08575 1304 aa13.78□□□□□ -0.2
SYNE2-227ENST00000557307 COL1A1P02452 1464 aaPredicted RBP13.78□□□□□ -0.2
SYNE2-227ENST00000557307 CLRN2A0PK11 232 aa13.77□□□□□ -0.21
SYNE2-227ENST00000557307 RFX5P48382 616 aaPredicted RBP13.77□□□□□ -0.21
SYNE2-227ENST00000557307 MKRN3Q13064 507 aaKnown RBP13.77□□□□□ -0.21
SYNE2-227ENST00000557307 OGFOD1Q8N543 542 aa13.77□□□□□ -0.21
SYNE2-227ENST00000557307 FAM84BQ96KN1 310 aaPredicted RBP13.77□□□□□ -0.21
SYNE2-227ENST00000557307 CSRNP1Q96S65 589 aa13.77□□□□□ -0.21
SYNE2-227ENST00000557307 SMC4Q9NTJ3 1288 aa13.77□□□□□ -0.21
SYNE2-227ENST00000557307 TNNQ9UQP3 1299 aa13.77□□□□□ -0.21
SYNE2-227ENST00000557307 TNRC18O15417 2968 aaPredicted RBP13.77□□□□□ -0.21
SYNE2-227ENST00000557307 CFAP100Q494V2 611 aa13.76□□□□□ -0.21
SYNE2-227ENST00000557307 CDAN1Q8IWY9 1227 aa13.76□□□□□ -0.21
SYNE2-227ENST00000557307 TDRD7Q8NHU6 1098 aaKnown RBP13.76□□□□□ -0.21
SYNE2-227ENST00000557307 PRMT6Q96LA8 375 aaPredicted RBP13.76□□□□□ -0.21
SYNE2-227ENST00000557307 RNF186Q9NXI6 227 aa13.76□□□□□ -0.21
SYNE2-227ENST00000557307 FAM205AQ6ZU69 1335 aa13.75□□□□□ -0.21
SYNE2-227ENST00000557307 SPDYE2BA6NHP3 402 aa13.75□□□□□ -0.21
SYNE2-227ENST00000557307 SPDYE6P0CI01 402 aa13.75□□□□□ -0.21
SYNE2-227ENST00000557307 UBE4AQ14139 1066 aa13.75□□□□□ -0.21
SYNE2-227ENST00000557307 ALDH1L2Q3SY69 923 aa13.75□□□□□ -0.21
SYNE2-227ENST00000557307 CCDC102AQ96A19 550 aa13.75□□□□□ -0.21
SYNE2-227ENST00000557307 HDAC9Q9UKV0 1011 aa13.75□□□□□ -0.21
SYNE2-227ENST00000557307 NOB1Q9ULX3 412 aaKnown RBP13.75□□□□□ -0.21
SYNE2-227ENST00000557307 TRPA1O75762 1119 aa13.74□□□□□ -0.21
SYNE2-227ENST00000557307 PTPN12Q05209 780 aaKnown RBP13.74□□□□□ -0.21
SYNE2-227ENST00000557307 TTLL12Q14166 644 aaPredicted RBP13.74□□□□□ -0.21
SYNE2-227ENST00000557307 DLGAP5Q15398 846 aa13.74□□□□□ -0.21
SYNE2-227ENST00000557307 MTMR14Q8NCE2 650 aa13.74□□□□□ -0.21
SYNE2-227ENST00000557307 MCOLN1Q9GZU1 580 aa13.74□□□□□ -0.21
SYNE2-227ENST00000557307 MROH5Q6ZUA9 1318 aa13.73□□□□□ -0.21
SYNE2-227ENST00000557307 CCER2I3L3R5 266 aa13.73□□□□□ -0.21
SYNE2-227ENST00000557307 HIBADHP31937 336 aaKnown RBP13.73□□□□□ -0.21
SYNE2-227ENST00000557307 FKBP1AP62942 108 aaKnown RBP13.73□□□□□ -0.21
SYNE2-227ENST00000557307 FKBP1BP68106 108 aa13.73□□□□□ -0.21
SYNE2-227ENST00000557307 METTL24Q5JXM2 366 aa13.73□□□□□ -0.21
SYNE2-227ENST00000557307 MFSD14BQ5SR56 506 aa13.73□□□□□ -0.21
SYNE2-227ENST00000557307 FBXO33Q7Z6M2 555 aa13.73□□□□□ -0.21
SYNE2-227ENST00000557307 APOBEC3FQ8IUX4 373 aaKnown RBP13.73□□□□□ -0.21
SYNE2-227ENST00000557307 CLMNQ96JQ2 1002 aa13.73□□□□□ -0.21
SYNE2-227ENST00000557307 DEFB129Q9H1M3 183 aa13.73□□□□□ -0.21
SYNE2-227ENST00000557307 VEZTQ9HBM0 779 aa13.73□□□□□ -0.21
SYNE2-227ENST00000557307 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.73□□□□□ -0.21
SYNE2-227ENST00000557307 CA12O43570 354 aa13.72□□□□□ -0.21
SYNE2-227ENST00000557307 PDE8BO95263 885 aa13.72□□□□□ -0.21
SYNE2-227ENST00000557307 FGFR2P21802 821 aa13.72□□□□□ -0.21
SYNE2-227ENST00000557307 BCAMP50895 628 aa13.72□□□□□ -0.21
SYNE2-227ENST00000557307 CHAF1AQ13111 956 aaPredicted RBP13.72□□□□□ -0.21
SYNE2-227ENST00000557307 NBPF12Q5TAG4 269 aaPredicted RBP13.72□□□□□ -0.21
SYNE2-227ENST00000557307 ATG9AQ7Z3C6 839 aa13.72□□□□□ -0.21
SYNE2-227ENST00000557307 ANGEL1Q9UNK9 670 aaKnown RBP13.72□□□□□ -0.21
SYNE2-227ENST00000557307 TTF2Q9UNY4 1162 aaKnown RBP13.72□□□□□ -0.21
SYNE2-227ENST00000557307 ZSWIM8A7E2V4 1837 aa13.71□□□□□ -0.21
SYNE2-227ENST00000557307 RARSP54136 660 aaKnown RBP13.71□□□□□ -0.21
SYNE2-227ENST00000557307 DGKZQ13574 1117 aa13.71□□□□□ -0.21
SYNE2-227ENST00000557307 MEIS3Q99687 375 aa13.71□□□□□ -0.21
SYNE2-227ENST00000557307 SIL1Q9H173 461 aa13.71□□□□□ -0.21
SYNE2-227ENST00000557307 R3HDMLQ9H3Y0 253 aa13.71□□□□□ -0.21
SYNE2-227ENST00000557307 TDRD3Q9H7E2 651 aaKnown RBP13.71□□□□□ -0.21
SYNE2-227ENST00000557307 SAGE1Q9NXZ1 904 aa13.71□□□□□ -0.21
SYNE2-227ENST00000557307 PA2G4Q9UQ80 394 aaKnown RBP13.71□□□□□ -0.21
SYNE2-227ENST00000557307 HTTP42858 3142 aa13.7□□□□□ -0.22
SYNE2-227ENST00000557307 RBM5P52756 815 aaKnown RBP eCLIP13.7□□□□□ -0.22
SYNE2-227ENST00000557307 SPDYE2Q495Y8 402 aa13.7□□□□□ -0.22
SYNE2-227ENST00000557307 LDLRAD1Q5T700 205 aa13.7□□□□□ -0.22
SYNE2-227ENST00000557307 ZNF70Q9UC06 446 aaPredicted RBP13.7□□□□□ -0.22
SYNE2-227ENST00000557307 LRRFIP2Q9Y608 721 aaKnown RBP13.7□□□□□ -0.22
SYNE2-227ENST00000557307 MYH2Q9UKX2 1941 aa13.7□□□□□ -0.22
SYNE2-227ENST00000557307 CCDC85CA6NKD9 419 aa13.69□□□□□ -0.22
SYNE2-227ENST00000557307 EYA2O00167 538 aa13.69□□□□□ -0.22
SYNE2-227ENST00000557307 TBC1D8O95759 1140 aa13.69□□□□□ -0.22
SYNE2-227ENST00000557307 GJA5P36382 358 aa13.69□□□□□ -0.22
SYNE2-227ENST00000557307 CRKP46108 304 aa13.69□□□□□ -0.22
SYNE2-227ENST00000557307 MMP14P50281 582 aa13.69□□□□□ -0.22
SYNE2-227ENST00000557307 CACNB3P54284 484 aa13.69□□□□□ -0.22
SYNE2-227ENST00000557307 RASA3Q14644 834 aa13.69□□□□□ -0.22
SYNE2-227ENST00000557307 TEPSINQ96N21 525 aa13.69□□□□□ -0.22
SYNE2-227ENST00000557307 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.69□□□□□ -0.22
SYNE2-227ENST00000557307 DOCK2Q92608 1830 aa13.69□□□□□ -0.22
SYNE2-227ENST00000557307 MYO5AQ9Y4I1 1855 aaKnown RBP13.68□□□□□ -0.22
SYNE2-227ENST00000557307 UBTFL1P0CB47 393 aaPredicted RBP13.68□□□□□ -0.22
SYNE2-227ENST00000557307 NF2P35240 595 aa13.68□□□□□ -0.22
SYNE2-227ENST00000557307 ARMC9Q7Z3E5 817 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms