RNA–Protein interactions for RNA: ENST00000557024.1

SYNE2-224, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 998 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-224ENST00000557024 HYPKQ9NX55 129 aa12.07□□□□□ -0.48
SYNE2-224ENST00000557024 TAOK2Q9UL54 1235 aa12.07□□□□□ -0.48
SYNE2-224ENST00000557024 MYO3BQ8WXR4 1341 aa12.07□□□□□ -0.48
SYNE2-224ENST00000557024 BRCA2P51587 3418 aa12.06□□□□□ -0.48
SYNE2-224ENST00000557024 H0YGN5 161 aa12.06□□□□□ -0.48
SYNE2-224ENST00000557024 ZBTB48P10074 688 aaPredicted RBP12.06□□□□□ -0.48
SYNE2-224ENST00000557024 GOLGA2Q08379 1002 aa12.06□□□□□ -0.48
SYNE2-224ENST00000557024 NEUROD2Q15784 382 aa12.06□□□□□ -0.48
SYNE2-224ENST00000557024 KIAA0825Q8IV33 1275 aa12.06□□□□□ -0.48
SYNE2-224ENST00000557024 MYD88Q99836 296 aa12.06□□□□□ -0.48
SYNE2-224ENST00000557024 DEFB129Q9H1M3 183 aa12.06□□□□□ -0.48
SYNE2-224ENST00000557024 MYCP01106 439 aaPredicted RBP12.05□□□□□ -0.48
SYNE2-224ENST00000557024 PCCAP05165 728 aaPredicted RBP12.05□□□□□ -0.48
SYNE2-224ENST00000557024 HOXB7P09629 217 aa12.05□□□□□ -0.48
SYNE2-224ENST00000557024 SP3Q02447 781 aa12.05□□□□□ -0.48
SYNE2-224ENST00000557024 DDX10Q13206 875 aaKnown RBP12.05□□□□□ -0.48
SYNE2-224ENST00000557024 ZBED3Q96IU2 234 aaPredicted RBP12.05□□□□□ -0.48
SYNE2-224ENST00000557024 ZNF333Q96JL9 665 aa12.05□□□□□ -0.48
SYNE2-224ENST00000557024 COA1Q9GZY4 146 aa12.05□□□□□ -0.48
SYNE2-224ENST00000557024 MINPP1Q9UNW1 487 aa12.05□□□□□ -0.48
SYNE2-224ENST00000557024 SSC5DA1L4H1 1573 aa12.05□□□□□ -0.48
SYNE2-224ENST00000557024 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.04□□□□□ -0.48
SYNE2-224ENST00000557024 GJA5P36382 358 aa12.04□□□□□ -0.48
SYNE2-224ENST00000557024 CCT4P50991 539 aaKnown RBP12.04□□□□□ -0.48
SYNE2-224ENST00000557024 MAP3K11Q16584 847 aa12.04□□□□□ -0.48
SYNE2-224ENST00000557024 SLC4A8Q2Y0W8 1093 aa12.04□□□□□ -0.48
SYNE2-224ENST00000557024 DUSP27Q5VZP5 1158 aa12.04□□□□□ -0.48
SYNE2-224ENST00000557024 TTLL5Q6EMB2 1281 aa12.04□□□□□ -0.48
SYNE2-224ENST00000557024 OTUD7BQ6GQQ9 843 aa12.04□□□□□ -0.48
SYNE2-224ENST00000557024 TXNRD3Q86VQ6 643 aa12.04□□□□□ -0.48
SYNE2-224ENST00000557024 CCDC191Q8NCU4 936 aa12.04□□□□□ -0.48
SYNE2-224ENST00000557024 ZFP91Q96JP5 570 aaPredicted RBP12.04□□□□□ -0.48
SYNE2-224ENST00000557024 CDC5LQ99459 802 aaKnown RBP12.04□□□□□ -0.48
SYNE2-224ENST00000557024 CWC25Q9NXE8 425 aaPredicted RBP12.04□□□□□ -0.48
SYNE2-224ENST00000557024 PSME4Q14997 1843 aa12.03□□□□□ -0.48
SYNE2-224ENST00000557024 PPP1R12BO60237 982 aaPredicted RBP12.03□□□□□ -0.48
SYNE2-224ENST00000557024 KLRK1P26718 216 aa12.03□□□□□ -0.48
SYNE2-224ENST00000557024 MMP14P50281 582 aa12.03□□□□□ -0.48
SYNE2-224ENST00000557024 CTSWP56202 376 aa12.03□□□□□ -0.48
SYNE2-224ENST00000557024 SLC9C1Q4G0N8 1177 aa12.03□□□□□ -0.48
SYNE2-224ENST00000557024 CCDC146Q8IYE0 955 aa12.03□□□□□ -0.48
SYNE2-224ENST00000557024 OTUD5Q96G74 571 aa12.03□□□□□ -0.48
SYNE2-224ENST00000557024 PTPN18Q99952 460 aa12.03□□□□□ -0.48
SYNE2-224ENST00000557024 PHAXQ9H814 394 aaKnown RBP12.03□□□□□ -0.48
SYNE2-224ENST00000557024 BSDC1Q9NW68 430 aaPredicted RBP12.03□□□□□ -0.48
SYNE2-224ENST00000557024 PTCH2Q9Y6C5 1203 aa12.03□□□□□ -0.48
SYNE2-224ENST00000557024 COL1A1P02452 1464 aaPredicted RBP12.02□□□□□ -0.48
SYNE2-224ENST00000557024 DLL1O00548 723 aa12.02□□□□□ -0.49
SYNE2-224ENST00000557024 GTF2IP78347 998 aa12.02□□□□□ -0.49
SYNE2-224ENST00000557024 DLGAP5Q15398 846 aa12.02□□□□□ -0.49
SYNE2-224ENST00000557024 GREM2Q9H772 168 aa12.02□□□□□ -0.49
SYNE2-224ENST00000557024 TRIM35Q9UPQ4 493 aa12.02□□□□□ -0.49
SYNE2-224ENST00000557024 PCDHAC2Q9Y5I4 1007 aa12.02□□□□□ -0.49
SYNE2-224ENST00000557024 RBBP6Q7Z6E9 1792 aaKnown RBP12.02□□□□□ -0.49
SYNE2-224ENST00000557024 KIAA0100Q14667 2235 aaKnown RBP12.02□□□□□ -0.49
SYNE2-224ENST00000557024 TRIOBPQ9H2D6 2365 aa12.01□□□□□ -0.49
SYNE2-224ENST00000557024 SZT2Q5T011 3432 aa12.01□□□□□ -0.49
SYNE2-224ENST00000557024 CLRN2A0PK11 232 aa12.01□□□□□ -0.49
SYNE2-224ENST00000557024 NBPF11Q86T75 865 aa12.01□□□□□ -0.49
SYNE2-224ENST00000557024 STK24Q9Y6E0 443 aa12.01□□□□□ -0.49
SYNE2-224ENST00000557024 TESPA1A2RU30 521 aaPredicted RBP12□□□□□ -0.49
SYNE2-224ENST00000557024 IREB2P48200 963 aaKnown RBP12□□□□□ -0.49
SYNE2-224ENST00000557024 SUPT20HL1Q3ZLR7 823 aa12□□□□□ -0.49
SYNE2-224ENST00000557024 NBPF12Q5TAG4 269 aaPredicted RBP12□□□□□ -0.49
SYNE2-224ENST00000557024 CERS5Q8N5B7 392 aa12□□□□□ -0.49
SYNE2-224ENST00000557024 SLC17A8Q8NDX2 589 aa12□□□□□ -0.49
SYNE2-224ENST00000557024 TTLL11Q8NHH1 800 aa12□□□□□ -0.49
SYNE2-224ENST00000557024 SH3TC2Q8TF17 1288 aa12□□□□□ -0.49
SYNE2-224ENST00000557024 ELP3Q9H9T3 547 aa12□□□□□ -0.49
SYNE2-224ENST00000557024 VEZTQ9HBM0 779 aa12□□□□□ -0.49
SYNE2-224ENST00000557024 RBM27Q9P2N5 1060 aaKnown RBP12□□□□□ -0.49
SYNE2-224ENST00000557024 LEMD3Q9Y2U8 911 aa12□□□□□ -0.49
SYNE2-224ENST00000557024 PPP2R3BQ9Y5P8 575 aa12□□□□□ -0.49
SYNE2-224ENST00000557024 UNCXA6NJT0 531 aa11.99□□□□□ -0.49
SYNE2-224ENST00000557024 F8W031 263 aaPredicted RBP11.99□□□□□ -0.49
SYNE2-224ENST00000557024 USP2O75604 605 aaPredicted RBP11.99□□□□□ -0.49
SYNE2-224ENST00000557024 ARHGEF6Q15052 776 aa11.99□□□□□ -0.49
SYNE2-224ENST00000557024 ANKRD13AQ8IZ07 590 aa11.99□□□□□ -0.49
SYNE2-224ENST00000557024 OPTNQ96CV9 577 aa11.99□□□□□ -0.49
SYNE2-224ENST00000557024 METTL22Q9BUU2 404 aaPredicted RBP11.99□□□□□ -0.49
SYNE2-224ENST00000557024 MBIPQ9NS73 344 aa11.99□□□□□ -0.49
SYNE2-224ENST00000557024 ZNF804BA4D1E1 1349 aa11.99□□□□□ -0.49
SYNE2-224ENST00000557024 AOX1Q06278 1338 aa11.99□□□□□ -0.49
SYNE2-224ENST00000557024 RANBP2P49792 3224 aaKnown RBP11.99□□□□□ -0.49
SYNE2-224ENST00000557024 CEP290O15078 2479 aa11.98□□□□□ -0.49
SYNE2-224ENST00000557024 ZNF646O15015 1829 aaPredicted RBP11.98□□□□□ -0.49
SYNE2-224ENST00000557024 ELL2O00472 640 aaPredicted RBP11.98□□□□□ -0.49
SYNE2-224ENST00000557024 MYO1BO43795 1136 aa11.98□□□□□ -0.49
SYNE2-224ENST00000557024 TAF1CQ15572 869 aaPredicted RBP11.98□□□□□ -0.49
SYNE2-224ENST00000557024 CFAP100Q494V2 611 aa11.98□□□□□ -0.49
SYNE2-224ENST00000557024 MTMR14Q8NCE2 650 aa11.98□□□□□ -0.49
SYNE2-224ENST00000557024 BRI3BPQ8WY22 251 aa11.98□□□□□ -0.49
SYNE2-224ENST00000557024 MS4A4AQ96JQ5 239 aa11.98□□□□□ -0.49
SYNE2-224ENST00000557024 MAP3K2Q9Y2U5 619 aa11.98□□□□□ -0.49
SYNE2-224ENST00000557024 IGHMBP2P38935 993 aaKnown RBP11.97□□□□□ -0.49
SYNE2-224ENST00000557024 KCNJ4P48050 445 aa11.97□□□□□ -0.49
SYNE2-224ENST00000557024 RASA3Q14644 834 aa11.97□□□□□ -0.49
SYNE2-224ENST00000557024 DIEXFQ68CQ4 756 aaKnown RBP11.97□□□□□ -0.49
SYNE2-224ENST00000557024 DPF3Q92784 378 aa11.97□□□□□ -0.49
SYNE2-224ENST00000557024 PRMT6Q96LA8 375 aaPredicted RBP11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms