RNA–Protein interactions for RNA: ENST00000556768.5

SCFD1-222, Transcript of sec1 family domain containing 1, humanhuman

TSL 1 (best)

Gene SCFD1, Length 1,829 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-222ENST00000556768 KIF12Q96FN5 646 aa9.21□□□□□ -0.94
SCFD1-222ENST00000556768 ZNF408Q9H9D4 720 aa9.21□□□□□ -0.94
SCFD1-222ENST00000556768 MED23Q9ULK4 1368 aa9.21□□□□□ -0.94
SCFD1-222ENST00000556768 MYO3BQ8WXR4 1341 aa9.2□□□□□ -0.94
SCFD1-222ENST00000556768 TRAF5O00463 557 aa9.2□□□□□ -0.94
SCFD1-222ENST00000556768 VEGFBP49765 207 aa9.2□□□□□ -0.94
SCFD1-222ENST00000556768 HIRAP54198 1017 aaPredicted RBP9.2□□□□□ -0.94
SCFD1-222ENST00000556768 MAP2K1Q02750 393 aaPredicted RBP9.2□□□□□ -0.94
SCFD1-222ENST00000556768 PDE4DQ08499 809 aa9.2□□□□□ -0.94
SCFD1-222ENST00000556768 KIF4BQ2VIQ3 1234 aa9.2□□□□□ -0.94
SCFD1-222ENST00000556768 USP48Q86UV5 1035 aa9.2□□□□□ -0.94
SCFD1-222ENST00000556768 CDCA7LQ96GN5 454 aa9.2□□□□□ -0.94
SCFD1-222ENST00000556768 GLIS2Q9BZE0 524 aaPredicted RBP9.2□□□□□ -0.94
SCFD1-222ENST00000556768 HDAC9Q9UKV0 1011 aa9.2□□□□□ -0.94
SCFD1-222ENST00000556768 PLIN1O60240 522 aa9.19□□□□□ -0.94
SCFD1-222ENST00000556768 HSPA1AP0DMV8 641 aaKnown RBP9.19□□□□□ -0.94
SCFD1-222ENST00000556768 HSPA1BP0DMV9 641 aaKnown RBP9.19□□□□□ -0.94
SCFD1-222ENST00000556768 GRM1Q13255 1194 aa9.19□□□□□ -0.94
SCFD1-222ENST00000556768 ZNF804AQ7Z570 1209 aa9.19□□□□□ -0.94
SCFD1-222ENST00000556768 C2orf69Q8N8R5 385 aa9.19□□□□□ -0.94
SCFD1-222ENST00000556768 MYOZ2Q9NPC6 264 aa9.19□□□□□ -0.94
SCFD1-222ENST00000556768 TAF5LO75529 589 aa9.19□□□□□ -0.94
SCFD1-222ENST00000556768 NBPF7P0C2Y1 421 aaPredicted RBP9.19□□□□□ -0.94
SCFD1-222ENST00000556768 ZNF280AP59817 542 aaPredicted RBP9.19□□□□□ -0.94
SCFD1-222ENST00000556768 SCARF1Q14162 830 aa9.19□□□□□ -0.94
SCFD1-222ENST00000556768 CST9Q5W186 159 aa9.19□□□□□ -0.94
SCFD1-222ENST00000556768 HELBQ8NG08 1087 aaPredicted RBP9.19□□□□□ -0.94
SCFD1-222ENST00000556768 WDR33Q9C0J8 1336 aaKnown RBP9.18□□□□□ -0.94
SCFD1-222ENST00000556768 SHTN1A0MZ66 631 aa9.18□□□□□ -0.94
SCFD1-222ENST00000556768 SAPCD2Q86UD0 394 aa9.18□□□□□ -0.94
SCFD1-222ENST00000556768 VPS37DQ86XT2 251 aa9.18□□□□□ -0.94
SCFD1-222ENST00000556768 TRMT2AQ8IZ69 625 aaKnown RBP9.18□□□□□ -0.94
SCFD1-222ENST00000556768 CAPNS2Q96L46 248 aa9.18□□□□□ -0.94
SCFD1-222ENST00000556768 API5Q9BZZ5 524 aaKnown RBP9.18□□□□□ -0.94
SCFD1-222ENST00000556768 TLL2Q9Y6L7 1015 aa9.18□□□□□ -0.94
SCFD1-222ENST00000556768 WTIPA6NIX2 430 aaPredicted RBP9.17□□□□□ -0.94
SCFD1-222ENST00000556768 IPO8O15397 1037 aaKnown RBP9.17□□□□□ -0.94
SCFD1-222ENST00000556768 GTF2IP78347 998 aa9.17□□□□□ -0.94
SCFD1-222ENST00000556768 EPHA10Q5JZY3 1008 aa9.17□□□□□ -0.94
SCFD1-222ENST00000556768 DACT2Q5SW24 774 aa9.17□□□□□ -0.94
SCFD1-222ENST00000556768 IFFO2Q5TF58 517 aa9.17□□□□□ -0.94
SCFD1-222ENST00000556768 SUCLG2Q96I99 432 aa9.17□□□□□ -0.94
SCFD1-222ENST00000556768 ZNF594Q96JF6 807 aaPredicted RBP9.17□□□□□ -0.94
SCFD1-222ENST00000556768 HHIPL1Q96JK4 782 aa9.17□□□□□ -0.94
SCFD1-222ENST00000556768 BICC1Q9H694 974 aaKnown RBP9.17□□□□□ -0.94
SCFD1-222ENST00000556768 CD209Q9NNX6 404 aa9.17□□□□□ -0.94
SCFD1-222ENST00000556768 GGA3Q9NZ52 723 aa9.17□□□□□ -0.94
SCFD1-222ENST00000556768 NOB1Q9ULX3 412 aaKnown RBP9.17□□□□□ -0.94
SCFD1-222ENST00000556768 UTYO14607 1347 aa9.17□□□□□ -0.94
SCFD1-222ENST00000556768 MROH5Q6ZUA9 1318 aa9.17□□□□□ -0.94
SCFD1-222ENST00000556768 DUOX1Q9NRD9 1551 aa9.17□□□□□ -0.94
SCFD1-222ENST00000556768 FRAT2O75474 233 aaPredicted RBP9.17□□□□□ -0.94
SCFD1-222ENST00000556768 UBTFL1P0CB47 393 aaPredicted RBP9.17□□□□□ -0.94
SCFD1-222ENST00000556768 MAP2K2P36507 400 aa9.17□□□□□ -0.94
SCFD1-222ENST00000556768 CTCFP49711 727 aaPredicted RBP9.17□□□□□ -0.94
SCFD1-222ENST00000556768 HUNKP57058 714 aa9.17□□□□□ -0.94
SCFD1-222ENST00000556768 FMR1Q06787 632 aaKnown RBP eCLIP9.17□□□□□ -0.94
SCFD1-222ENST00000556768 UBE4AQ14139 1066 aa9.17□□□□□ -0.94
SCFD1-222ENST00000556768 CAVIN4Q5BKX8 364 aa9.17□□□□□ -0.94
SCFD1-222ENST00000556768 ANGEL2Q5VTE6 544 aaKnown RBP9.17□□□□□ -0.94
SCFD1-222ENST00000556768 C15orf52Q6ZUT6 534 aaKnown RBP9.17□□□□□ -0.94
SCFD1-222ENST00000556768 TXNRD3Q86VQ6 643 aa9.17□□□□□ -0.94
SCFD1-222ENST00000556768 GMLQ99445 158 aa9.17□□□□□ -0.94
SCFD1-222ENST00000556768 DDX60Q8IY21 1712 aaKnown RBP9.17□□□□□ -0.94
SCFD1-222ENST00000556768 MYO1BO43795 1136 aa9.16□□□□□ -0.94
SCFD1-222ENST00000556768 EGFRP00533 1210 aa9.16□□□□□ -0.94
SCFD1-222ENST00000556768 NF2P35240 595 aa9.16□□□□□ -0.94
SCFD1-222ENST00000556768 METTL24Q5JXM2 366 aa9.16□□□□□ -0.94
SCFD1-222ENST00000556768 CYP4F22Q6NT55 531 aa9.16□□□□□ -0.94
SCFD1-222ENST00000556768 KIAA0825Q8IV33 1275 aa9.16□□□□□ -0.94
SCFD1-222ENST00000556768 USP44Q9H0E7 712 aa9.16□□□□□ -0.94
SCFD1-222ENST00000556768 GBA2Q9HCG7 927 aaPredicted RBP9.16□□□□□ -0.94
SCFD1-222ENST00000556768 KIF16BQ96L93 1317 aa9.16□□□□□ -0.94
SCFD1-222ENST00000556768 SASH1O94885 1247 aa9.15□□□□□ -0.94
SCFD1-222ENST00000556768 HIBADHP31937 336 aaKnown RBP9.15□□□□□ -0.94
SCFD1-222ENST00000556768 HNRNPUQ00839 825 aaKnown RBP eCLIP9.15□□□□□ -0.94
SCFD1-222ENST00000556768 RABL6Q3YEC7 729 aaPredicted RBP9.15□□□□□ -0.94
SCFD1-222ENST00000556768 CCDC102AQ96A19 550 aa9.15□□□□□ -0.94
SCFD1-222ENST00000556768 WBP1LQ9NX94 342 aa9.15□□□□□ -0.94
SCFD1-222ENST00000556768 PITPNM2Q9BZ72 1349 aa9.15□□□□□ -0.94
SCFD1-222ENST00000556768 LRRC37AA6NMS7 1700 aa9.15□□□□□ -0.95
SCFD1-222ENST00000556768 ADM5C9JUS6 153 aa9.15□□□□□ -0.95
SCFD1-222ENST00000556768 SNAP23O00161 211 aa9.15□□□□□ -0.95
SCFD1-222ENST00000556768 IL1R1P14778 569 aa9.15□□□□□ -0.95
SCFD1-222ENST00000556768 KLRK1P26718 216 aa9.15□□□□□ -0.95
SCFD1-222ENST00000556768 RARSP54136 660 aaKnown RBP9.15□□□□□ -0.95
SCFD1-222ENST00000556768 NOGQ13253 232 aa9.15□□□□□ -0.95
SCFD1-222ENST00000556768 DLGAP5Q15398 846 aa9.15□□□□□ -0.95
SCFD1-222ENST00000556768 COL13A1Q5TAT6 717 aaPredicted RBP9.15□□□□□ -0.95
SCFD1-222ENST00000556768 TNS4Q8IZW8 715 aa9.15□□□□□ -0.95
SCFD1-222ENST00000556768 ARHGAP45Q92619 1136 aa9.15□□□□□ -0.95
SCFD1-222ENST00000556768 LAMB2P55268 1798 aa9.14□□□□□ -0.95
SCFD1-222ENST00000556768 ZNF609O15014 1411 aa9.14□□□□□ -0.95
SCFD1-222ENST00000556768 WNT10BO00744 389 aa9.14□□□□□ -0.95
SCFD1-222ENST00000556768 CA12O43570 354 aa9.14□□□□□ -0.95
SCFD1-222ENST00000556768 PDE8BO95263 885 aa9.14□□□□□ -0.95
SCFD1-222ENST00000556768 ZNF157P51786 506 aaPredicted RBP9.14□□□□□ -0.95
SCFD1-222ENST00000556768 RBM5P52756 815 aaKnown RBP eCLIP9.14□□□□□ -0.95
SCFD1-222ENST00000556768 FKBP1BP68106 108 aa9.14□□□□□ -0.95
SCFD1-222ENST00000556768 NBPF9Q3BBW0 867 aa9.14□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms