RNA–Protein interactions for RNA: ENST00000555961.1

NEK9-208, Transcript of NIMA related kinase 9, humanhuman

TSL 3

Gene NEK9, Length 288 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK9-208ENST00000555961 EHHADHQ08426 723 aa3.29□□□□□ -1.88
NEK9-208ENST00000555961 C19orf57Q0VDD7 668 aa3.29□□□□□ -1.88
NEK9-208ENST00000555961 IKBKEQ14164 716 aa3.29□□□□□ -1.88
NEK9-208ENST00000555961 FAM26DQ5JW98 314 aa3.29□□□□□ -1.88
NEK9-208ENST00000555961 BEND4Q6ZU67 534 aa3.29□□□□□ -1.88
NEK9-208ENST00000555961 ATCAYQ86WG3 371 aa3.29□□□□□ -1.88
NEK9-208ENST00000555961 TRIM42Q8IWZ5 723 aa3.29□□□□□ -1.88
NEK9-208ENST00000555961 FAM20CQ8IXL6 584 aa3.29□□□□□ -1.88
NEK9-208ENST00000555961 ARMC10Q8N2F6 343 aa3.29□□□□□ -1.88
NEK9-208ENST00000555961 FOXD4L4Q8WXT5 416 aaPredicted RBP3.29□□□□□ -1.88
NEK9-208ENST00000555961 KLHDC7BQ96G42 594 aa3.29□□□□□ -1.88
NEK9-208ENST00000555961 FAM46AQ96IP4 442 aaKnown RBP3.29□□□□□ -1.88
NEK9-208ENST00000555961 POP1Q99575 1024 aaKnown RBP3.29□□□□□ -1.88
NEK9-208ENST00000555961 FAM83CQ9BQN1 747 aa3.29□□□□□ -1.88
NEK9-208ENST00000555961 YIPF2Q9BWQ6 316 aa3.29□□□□□ -1.88
NEK9-208ENST00000555961 USP26Q9BXU7 913 aa3.29□□□□□ -1.88
NEK9-208ENST00000555961 ATG3Q9NT62 314 aa3.29□□□□□ -1.88
NEK9-208ENST00000555961 KCNK4Q9NYG8 393 aa3.29□□□□□ -1.88
NEK9-208ENST00000555961 ZBTB7CA1YPR0 619 aa3.28□□□□□ -1.88
NEK9-208ENST00000555961 HMX2A2RU54 273 aa3.28□□□□□ -1.88
NEK9-208ENST00000555961 KIAA1324LA8MWY0 1029 aaPredicted RBP3.28□□□□□ -1.88
NEK9-208ENST00000555961 DDX3YO15523 660 aaKnown RBP3.28□□□□□ -1.88
NEK9-208ENST00000555961 BRD1O95696 1058 aa3.28□□□□□ -1.88
NEK9-208ENST00000555961 PDGFAP04085 211 aa3.28□□□□□ -1.88
NEK9-208ENST00000555961 EIF1AXP47813 144 aaKnown RBP3.28□□□□□ -1.88
NEK9-208ENST00000555961 GP2P55259 537 aaKnown RBP3.28□□□□□ -1.88
NEK9-208ENST00000555961 SRPK2P78362 688 aaKnown RBP3.28□□□□□ -1.88
NEK9-208ENST00000555961 KCNA1Q09470 495 aa3.28□□□□□ -1.88
NEK9-208ENST00000555961 HP1BP3Q5SSJ5 553 aaPredicted RBP3.28□□□□□ -1.88
NEK9-208ENST00000555961 NUTM2GQ5VZR2 741 aa3.28□□□□□ -1.88
NEK9-208ENST00000555961 XKR5Q6UX68 686 aa3.28□□□□□ -1.88
NEK9-208ENST00000555961 PPP1R3FQ6ZSY5 799 aaPredicted RBP3.28□□□□□ -1.88
NEK9-208ENST00000555961 ZDHHC13Q8IUH4 622 aa3.28□□□□□ -1.88
NEK9-208ENST00000555961 C1orf127Q8N9H9 656 aa3.28□□□□□ -1.88
NEK9-208ENST00000555961 TMEM102Q8N9M5 508 aaPredicted RBP3.28□□□□□ -1.88
NEK9-208ENST00000555961 SNX29Q8TEQ0 813 aa3.28□□□□□ -1.88
NEK9-208ENST00000555961 BSNDQ8WZ55 320 aa3.28□□□□□ -1.88
NEK9-208ENST00000555961 OSMRQ99650 979 aa3.28□□□□□ -1.88
NEK9-208ENST00000555961 CYP4F12Q9HCS2 524 aa3.28□□□□□ -1.88
NEK9-208ENST00000555961 DZANK1Q9NVP4 752 aa3.28□□□□□ -1.88
NEK9-208ENST00000555961 CNTN3Q9P232 1028 aa3.28□□□□□ -1.88
NEK9-208ENST00000555961 SALL4Q9UJQ4 1053 aa3.28□□□□□ -1.88
NEK9-208ENST00000555961 WDR64B1ANS9 1081 aa3.27□□□□□ -1.89
NEK9-208ENST00000555961 ADAM11O75078 769 aa3.27□□□□□ -1.89
NEK9-208ENST00000555961 FAM13AO94988 1023 aa3.27□□□□□ -1.89
NEK9-208ENST00000555961 WNT11O96014 354 aa3.27□□□□□ -1.89
NEK9-208ENST00000555961 MPSTP25325 297 aa3.27□□□□□ -1.89
NEK9-208ENST00000555961 PREPP48147 710 aa3.27□□□□□ -1.89
NEK9-208ENST00000555961 USP11P51784 963 aa3.27□□□□□ -1.89
NEK9-208ENST00000555961 PAOXQ6QHF9 649 aa3.27□□□□□ -1.89
NEK9-208ENST00000555961 C12orf50Q8NA57 414 aaPredicted RBP3.27□□□□□ -1.89
NEK9-208ENST00000555961 SHKBP1Q8TBC3 707 aa3.27□□□□□ -1.89
NEK9-208ENST00000555961 ASAP3Q8TDY4 903 aa3.27□□□□□ -1.89
NEK9-208ENST00000555961 GTF3C2Q8WUA4 911 aaPredicted RBP3.27□□□□□ -1.89
NEK9-208ENST00000555961 OSBPL1AQ9BXW6 950 aa3.27□□□□□ -1.89
NEK9-208ENST00000555961 ANGEL1Q9UNK9 670 aaKnown RBP3.27□□□□□ -1.89
NEK9-208ENST00000555961 LEMD3Q9Y2U8 911 aa3.27□□□□□ -1.89
NEK9-208ENST00000555961 COL17A1Q9UMD9 1497 aaPredicted RBP3.27□□□□□ -1.89
NEK9-208ENST00000555961 MEGF11A6BM72 1044 aa3.26□□□□□ -1.89
NEK9-208ENST00000555961 A6NHS1 94 aa3.26□□□□□ -1.89
NEK9-208ENST00000555961 ACPPP15309 386 aa3.26□□□□□ -1.89
NEK9-208ENST00000555961 MAP4P27816 1152 aaKnown RBP3.26□□□□□ -1.89
NEK9-208ENST00000555961 SF3B2Q13435 895 aaKnown RBP3.26□□□□□ -1.89
NEK9-208ENST00000555961 CPSF6Q16630 551 aaKnown RBP eCLIP3.26□□□□□ -1.89
NEK9-208ENST00000555961 DDX54Q8TDD1 881 aaKnown RBP3.26□□□□□ -1.89
NEK9-208ENST00000555961 MFSD14AQ96MC6 490 aa3.26□□□□□ -1.89
NEK9-208ENST00000555961 METTL22Q9BUU2 404 aaPredicted RBP3.26□□□□□ -1.89
NEK9-208ENST00000555961 GGNBP2Q9H3C7 697 aa3.26□□□□□ -1.89
NEK9-208ENST00000555961 ZFYVE1Q9HBF4 777 aa3.26□□□□□ -1.89
NEK9-208ENST00000555961 PIM2Q9P1W9 311 aa3.26□□□□□ -1.89
NEK9-208ENST00000555961 SOX13Q9UN79 622 aa3.26□□□□□ -1.89
NEK9-208ENST00000555961 POLIQ9UNA4 740 aa3.26□□□□□ -1.89
NEK9-208ENST00000555961 AMOTL2Q9Y2J4 779 aa3.26□□□□□ -1.89
NEK9-208ENST00000555961 FAM95CA0A1B0GW59 222 aa3.25□□□□□ -1.89
NEK9-208ENST00000555961 EREGO14944 169 aa3.25□□□□□ -1.89
NEK9-208ENST00000555961 TNFRSF21O75509 655 aa3.25□□□□□ -1.89
NEK9-208ENST00000555961 TRPA1O75762 1119 aa3.25□□□□□ -1.89
NEK9-208ENST00000555961 ABL1P00519 1130 aa3.25□□□□□ -1.89
NEK9-208ENST00000555961 NEFLP07196 543 aa3.25□□□□□ -1.89
NEK9-208ENST00000555961 TAL1P17542 331 aaPredicted RBP3.25□□□□□ -1.89
NEK9-208ENST00000555961 SPINK2P20155 84 aa3.25□□□□□ -1.89
NEK9-208ENST00000555961 HNRNPUQ00839 825 aaKnown RBP eCLIP3.25□□□□□ -1.89
NEK9-208ENST00000555961 GSTM4Q03013 218 aa3.25□□□□□ -1.89
NEK9-208ENST00000555961 NFKBIBQ15653 356 aa3.25□□□□□ -1.89
NEK9-208ENST00000555961 FBXL6Q8N531 539 aa3.25□□□□□ -1.89
NEK9-208ENST00000555961 RETREG2Q8NC44 543 aa3.25□□□□□ -1.89
NEK9-208ENST00000555961 SMG8Q8ND04 991 aaKnown RBP3.25□□□□□ -1.89
NEK9-208ENST00000555961 NXPE3Q969Y0 559 aa3.25□□□□□ -1.89
NEK9-208ENST00000555961 HHIPQ96QV1 700 aa3.25□□□□□ -1.89
NEK9-208ENST00000555961 ZKSCAN3Q9BRR0 538 aa3.25□□□□□ -1.89
NEK9-208ENST00000555961 SOX17Q9H6I2 414 aaPredicted RBP3.25□□□□□ -1.89
NEK9-208ENST00000555961 RNF114Q9Y508 228 aa3.25□□□□□ -1.89
NEK9-208ENST00000555961 OAS3Q9Y6K5 1087 aaKnown RBP3.25□□□□□ -1.89
NEK9-208ENST00000555961 LOC100289279A0A1B0GTE1 492 aa3.24□□□□□ -1.89
NEK9-208ENST00000555961 NFKBIEO00221 500 aa3.24□□□□□ -1.89
NEK9-208ENST00000555961 SOX1O00570 391 aaPredicted RBP3.24□□□□□ -1.89
NEK9-208ENST00000555961 MED26O95402 600 aa3.24□□□□□ -1.89
NEK9-208ENST00000555961 JAG1P78504 1218 aa3.24□□□□□ -1.89
NEK9-208ENST00000555961 FKBP4Q02790 459 aaKnown RBP eCLIP3.24□□□□□ -1.89
NEK9-208ENST00000555961 SGO2Q562F6 1265 aa3.24□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 69.5 ms