RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 SOX1O00570 391 aaPredicted RBP8.09□□□□□ -1.11
SCFD1-216ENST00000555550 C19orf57Q0VDD7 668 aa8.09□□□□□ -1.11
SCFD1-216ENST00000555550 ABI1Q8IZP0 508 aa8.09□□□□□ -1.11
SCFD1-216ENST00000555550 ATG3Q9NT62 314 aa8.09□□□□□ -1.11
SCFD1-216ENST00000555550 MEGF11A6BM72 1044 aa8.08□□□□□ -1.12
SCFD1-216ENST00000555550 F13BP05160 661 aa8.08□□□□□ -1.12
SCFD1-216ENST00000555550 ARL4DP49703 201 aa8.08□□□□□ -1.12
SCFD1-216ENST00000555550 DNM1Q05193 864 aaKnown RBP8.08□□□□□ -1.12
SCFD1-216ENST00000555550 FZD5Q13467 585 aa8.08□□□□□ -1.12
SCFD1-216ENST00000555550 C8orf34Q49A92 452 aa8.08□□□□□ -1.12
SCFD1-216ENST00000555550 EDEM1Q92611 657 aa8.08□□□□□ -1.12
SCFD1-216ENST00000555550 SOX13Q9UN79 622 aa8.08□□□□□ -1.12
SCFD1-216ENST00000555550 HIF3AQ9Y2N7 669 aa8.08□□□□□ -1.12
SCFD1-216ENST00000555550 LEMD3Q9Y2U8 911 aa8.08□□□□□ -1.12
SCFD1-216ENST00000555550 ATG7O95352 703 aa8.07□□□□□ -1.12
SCFD1-216ENST00000555550 DRD2P14416 443 aa8.07□□□□□ -1.12
SCFD1-216ENST00000555550 NUTM2GQ5VZR2 741 aa8.07□□□□□ -1.12
SCFD1-216ENST00000555550 CLP1Q92989 425 aaKnown RBP8.07□□□□□ -1.12
SCFD1-216ENST00000555550 DLGAP3O95886 979 aa8.06□□□□□ -1.12
SCFD1-216ENST00000555550 NFKBIBQ15653 356 aa8.06□□□□□ -1.12
SCFD1-216ENST00000555550 XKR5Q6UX68 686 aa8.06□□□□□ -1.12
SCFD1-216ENST00000555550 NXPE3Q969Y0 559 aa8.06□□□□□ -1.12
SCFD1-216ENST00000555550 USP26Q9BXU7 913 aa8.06□□□□□ -1.12
SCFD1-216ENST00000555550 VN1R5Q7Z5H4 357 aa8.05□□□□□ -1.12
SCFD1-216ENST00000555550 GIMAP7Q8NHV1 300 aa8.05□□□□□ -1.12
SCFD1-216ENST00000555550 FBLIM1Q8WUP2 373 aa8.05□□□□□ -1.12
SCFD1-216ENST00000555550 OSMRQ99650 979 aa8.05□□□□□ -1.12
SCFD1-216ENST00000555550 OSBPL1AQ9BXW6 950 aa8.05□□□□□ -1.12
SCFD1-216ENST00000555550 TMPRSS13Q9BYE2 586 aa8.05□□□□□ -1.12
SCFD1-216ENST00000555550 CHRDQ9H2X0 955 aa8.05□□□□□ -1.12
SCFD1-216ENST00000555550 ANGEL1Q9UNK9 670 aaKnown RBP8.05□□□□□ -1.12
SCFD1-216ENST00000555550 ATP2B4P23634 1241 aa8.04□□□□□ -1.12
SCFD1-216ENST00000555550 IKBKEQ14164 716 aa8.04□□□□□ -1.12
SCFD1-216ENST00000555550 CDPF1Q6NVV7 123 aa8.04□□□□□ -1.12
SCFD1-216ENST00000555550 TMEM102Q8N9M5 508 aaPredicted RBP8.04□□□□□ -1.12
SCFD1-216ENST00000555550 CCDC39Q9UFE4 941 aa8.04□□□□□ -1.12
SCFD1-216ENST00000555550 LOC100289279A0A1B0GTE1 492 aa8.03□□□□□ -1.12
SCFD1-216ENST00000555550 FAM95CA0A1B0GW59 222 aa8.03□□□□□ -1.12
SCFD1-216ENST00000555550 RPLP1P05386 114 aaKnown RBP8.03□□□□□ -1.12
SCFD1-216ENST00000555550 FOSL1P15407 271 aa8.03□□□□□ -1.12
SCFD1-216ENST00000555550 USP11P51784 963 aa8.03□□□□□ -1.12
SCFD1-216ENST00000555550 MSMPQ1L6U9 139 aa8.03□□□□□ -1.12
SCFD1-216ENST00000555550 BSNDQ8WZ55 320 aa8.03□□□□□ -1.12
SCFD1-216ENST00000555550 ZKSCAN3Q9BRR0 538 aa8.03□□□□□ -1.12
SCFD1-216ENST00000555550 CYP4F12Q9HCS2 524 aa8.03□□□□□ -1.12
SCFD1-216ENST00000555550 EREGO14944 169 aa8.02□□□□□ -1.13
SCFD1-216ENST00000555550 TIAF1O95411 115 aa8.02□□□□□ -1.13
SCFD1-216ENST00000555550 PDGFAP04085 211 aa8.02□□□□□ -1.13
SCFD1-216ENST00000555550 PCSK2P16519 638 aa8.02□□□□□ -1.13
SCFD1-216ENST00000555550 ADMP35318 185 aa8.02□□□□□ -1.13
SCFD1-216ENST00000555550 SMG8Q8ND04 991 aaKnown RBP8.02□□□□□ -1.13
SCFD1-216ENST00000555550 TTC16Q8NEE8 873 aa8.02□□□□□ -1.13
SCFD1-216ENST00000555550 PMEPA1Q969W9 287 aa8.02□□□□□ -1.13
SCFD1-216ENST00000555550 NOM1Q5C9Z4 860 aaKnown RBP8.01□□□□□ -1.13
SCFD1-216ENST00000555550 NFXL1Q6ZNB6 911 aa8.01□□□□□ -1.13
SCFD1-216ENST00000555550 TP53INP2Q8IXH6 220 aa8.01□□□□□ -1.13
SCFD1-216ENST00000555550 ASAP3Q8TDY4 903 aa8.01□□□□□ -1.13
SCFD1-216ENST00000555550 SUGCTQ9HAC7 445 aa8.01□□□□□ -1.13
SCFD1-216ENST00000555550 EXOSC6Q5RKV6 272 aaKnown RBP8□□□□□ -1.13
SCFD1-216ENST00000555550 LCE1DQ5T752 114 aa8□□□□□ -1.13
SCFD1-216ENST00000555550 OGFOD2Q6N063 350 aa8□□□□□ -1.13
SCFD1-216ENST00000555550 PAOXQ6QHF9 649 aa8□□□□□ -1.13
SCFD1-216ENST00000555550 CYP26A1O43174 497 aa7.99□□□□□ -1.13
SCFD1-216ENST00000555550 MZF1P28698 734 aaPredicted RBP7.99□□□□□ -1.13
SCFD1-216ENST00000555550 EIF1AXP47813 144 aaKnown RBP7.99□□□□□ -1.13
SCFD1-216ENST00000555550 GSTM4Q03013 218 aa7.99□□□□□ -1.13
SCFD1-216ENST00000555550 COL19A1Q14993 1142 aa7.99□□□□□ -1.13
SCFD1-216ENST00000555550 C2CD4AQ8NCU7 369 aaPredicted RBP7.99□□□□□ -1.13
SCFD1-216ENST00000555550 HELQQ8TDG4 1101 aa7.99□□□□□ -1.13
SCFD1-216ENST00000555550 TBC1D32Q96NH3 1257 aa7.99□□□□□ -1.13
SCFD1-216ENST00000555550 GTF3C3Q9Y5Q9 886 aa7.99□□□□□ -1.13
SCFD1-216ENST00000555550 FAM170BA6NMN3 283 aa7.98□□□□□ -1.13
SCFD1-216ENST00000555550 ESRRAP11474 423 aaPredicted RBP7.98□□□□□ -1.13
SCFD1-216ENST00000555550 MPSTP25325 297 aa7.98□□□□□ -1.13
SCFD1-216ENST00000555550 CBLL1Q75N03 491 aa7.98□□□□□ -1.13
SCFD1-216ENST00000555550 LATS2Q9NRM7 1088 aa7.98□□□□□ -1.13
SCFD1-216ENST00000555550 POLIQ9UNA4 740 aa7.98□□□□□ -1.13
SCFD1-216ENST00000555550 TNFRSF21O75509 655 aa7.97□□□□□ -1.13
SCFD1-216ENST00000555550 SOX4Q06945 474 aaPredicted RBP7.97□□□□□ -1.13
SCFD1-216ENST00000555550 MTMR3Q13615 1198 aa7.97□□□□□ -1.13
SCFD1-216ENST00000555550 ZAR1Q86SH2 424 aa7.97□□□□□ -1.13
SCFD1-216ENST00000555550 PRKAG2Q9UGJ0 569 aa7.97□□□□□ -1.13
SCFD1-216ENST00000555550 FOXD3Q9UJU5 478 aaPredicted RBP7.97□□□□□ -1.13
SCFD1-216ENST00000555550 METTL12A8MUP2 240 aa7.96□□□□□ -1.14
SCFD1-216ENST00000555550 PHACTR2O75167 634 aa7.96□□□□□ -1.14
SCFD1-216ENST00000555550 PRNPP04156 253 aa7.96□□□□□ -1.14
SCFD1-216ENST00000555550 AAMPQ13685 434 aa7.96□□□□□ -1.14
SCFD1-216ENST00000555550 GTF3C2Q8WUA4 911 aaPredicted RBP7.96□□□□□ -1.14
SCFD1-216ENST00000555550 FBXL18Q96ME1 805 aa7.96□□□□□ -1.14
SCFD1-216ENST00000555550 METTL22Q9BUU2 404 aaPredicted RBP7.96□□□□□ -1.14
SCFD1-216ENST00000555550 EDN3P14138 238 aa7.95□□□□□ -1.14
SCFD1-216ENST00000555550 CPSF6Q16630 551 aaKnown RBP eCLIP7.95□□□□□ -1.14
SCFD1-216ENST00000555550 VSIG10LQ86VR7 867 aa7.95□□□□□ -1.14
SCFD1-216ENST00000555550 KRTAP4-7Q9BYR0 210 aa7.95□□□□□ -1.14
SCFD1-216ENST00000555550 SOX17Q9H6I2 414 aaPredicted RBP7.95□□□□□ -1.14
SCFD1-216ENST00000555550 BSDC1Q9NW68 430 aaPredicted RBP7.95□□□□□ -1.14
SCFD1-216ENST00000555550 NFICP08651 508 aa7.94□□□□□ -1.14
SCFD1-216ENST00000555550 PEAR1Q5VY43 1037 aaPredicted RBP7.94□□□□□ -1.14
SCFD1-216ENST00000555550 GATA6Q92908 595 aa7.94□□□□□ -1.14
SCFD1-216ENST00000555550 ASIC4Q96FT7 647 aa7.94□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms