RNA–Protein interactions for RNA: ENST00000555116.5

SHMT2-217, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,885 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-217ENST00000555116 ADORA1P30542 326 aa17.58■□□□□ 0.4
SHMT2-217ENST00000555116 FKBP1AP62942 108 aaKnown RBP17.58■□□□□ 0.4
SHMT2-217ENST00000555116 SAMD7Q7Z3H4 446 aa17.58■□□□□ 0.4
SHMT2-217ENST00000555116 JAG2Q9Y219 1238 aa17.58■□□□□ 0.4
SHMT2-217ENST00000555116 AKAP2Q9Y2D5 859 aa17.58■□□□□ 0.4
SHMT2-217ENST00000555116 A0A1B0GUL7 405 aa17.57■□□□□ 0.4
SHMT2-217ENST00000555116 EGFRP00533 1210 aa17.57■□□□□ 0.4
SHMT2-217ENST00000555116 USP17L8P0C7I0 530 aa17.57■□□□□ 0.4
SHMT2-217ENST00000555116 TIMM10P62072 90 aa17.57■□□□□ 0.4
SHMT2-217ENST00000555116 IQSEC3Q9UPP2 1182 aaPredicted RBP17.57■□□□□ 0.4
SHMT2-217ENST00000555116 OS9Q13438 667 aaPredicted RBP17.56■□□□□ 0.4
SHMT2-217ENST00000555116 TBC1D10BQ4KMP7 808 aaPredicted RBP17.56■□□□□ 0.4
SHMT2-217ENST00000555116 CRBNQ96SW2 442 aa17.56■□□□□ 0.4
SHMT2-217ENST00000555116 CLEC11AQ9Y240 323 aa17.56■□□□□ 0.4
SHMT2-217ENST00000555116 HMMRO75330 724 aa17.56■□□□□ 0.4
SHMT2-217ENST00000555116 PHKA1P46020 1223 aa17.55■□□□□ 0.4
SHMT2-217ENST00000555116 XAGE2Q96GT9 111 aa17.55■□□□□ 0.4
SHMT2-217ENST00000555116 GPR108Q9NPR9 543 aa17.55■□□□□ 0.4
SHMT2-217ENST00000555116 PGAP2Q9UHJ9 254 aa17.55■□□□□ 0.4
SHMT2-217ENST00000555116 EXOC6BQ9Y2D4 811 aa17.55■□□□□ 0.4
SHMT2-217ENST00000555116 COL1A1P02452 1464 aaPredicted RBP17.55■□□□□ 0.4
SHMT2-217ENST00000555116 KIF4BQ2VIQ3 1234 aa17.54■□□□□ 0.4
SHMT2-217ENST00000555116 RBM26Q5T8P6 1007 aaKnown RBP17.54■□□□□ 0.4
SHMT2-217ENST00000555116 KIAA0825Q8IV33 1275 aa17.54■□□□□ 0.4
SHMT2-217ENST00000555116 ZBTB22O15209 634 aa17.54■□□□□ 0.4
SHMT2-217ENST00000555116 TNNI3KQ59H18 835 aa17.54■□□□□ 0.4
SHMT2-217ENST00000555116 MAP1SQ66K74 1059 aaPredicted RBP17.54■□□□□ 0.4
SHMT2-217ENST00000555116 CCDC102BQ68D86 513 aa17.54■□□□□ 0.4
SHMT2-217ENST00000555116 ZC3H15Q8WU90 426 aaKnown RBP17.54■□□□□ 0.4
SHMT2-217ENST00000555116 FPGT-TNNI3KV9GXZ4 949 aa17.54■□□□□ 0.4
SHMT2-217ENST00000555116 ITGBL1O95965 494 aaPredicted RBP17.53■□□□□ 0.4
SHMT2-217ENST00000555116 MMP14P50281 582 aa17.53■□□□□ 0.4
SHMT2-217ENST00000555116 CHAF1AQ13111 956 aaPredicted RBP17.53■□□□□ 0.4
SHMT2-217ENST00000555116 MFSD14BQ5SR56 506 aa17.53■□□□□ 0.4
SHMT2-217ENST00000555116 NEUROD6Q96NK8 337 aa17.53■□□□□ 0.4
SHMT2-217ENST00000555116 MYOZ2Q9NPC6 264 aa17.53■□□□□ 0.4
SHMT2-217ENST00000555116 ECM29Q5VYK3 1845 aa17.53■□□□□ 0.4
SHMT2-217ENST00000555116 TRPM7Q96QT4 1865 aa17.53■□□□□ 0.4
SHMT2-217ENST00000555116 FRAT2O75474 233 aaPredicted RBP17.52■□□□□ 0.4
SHMT2-217ENST00000555116 HSP90AB4PQ58FF6 505 aa17.52■□□□□ 0.4
SHMT2-217ENST00000555116 CNTROBQ8N137 903 aa17.52■□□□□ 0.4
SHMT2-217ENST00000555116 OGFOD1Q8N543 542 aa17.52■□□□□ 0.4
SHMT2-217ENST00000555116 GNL3LQ9NVN8 582 aaKnown RBP17.52■□□□□ 0.4
SHMT2-217ENST00000555116 HSPA6P17066 643 aa17.52■□□□□ 0.39
SHMT2-217ENST00000555116 ERC1Q8IUD2 1116 aa17.52■□□□□ 0.39
SHMT2-217ENST00000555116 PCDHB15Q9Y5E8 787 aa17.52■□□□□ 0.39
SHMT2-217ENST00000555116 AKAP11Q9UKA4 1901 aa17.52■□□□□ 0.39
SHMT2-217ENST00000555116 PASKQ96RG2 1323 aa17.51■□□□□ 0.39
SHMT2-217ENST00000555116 SEMA3EO15041 775 aa17.51■□□□□ 0.39
SHMT2-217ENST00000555116 GRIK5Q16478 980 aa17.51■□□□□ 0.39
SHMT2-217ENST00000555116 TBC1D22AQ8WUA7 517 aa17.51■□□□□ 0.39
SHMT2-217ENST00000555116 HDAC9Q9UKV0 1011 aa17.51■□□□□ 0.39
SHMT2-217ENST00000555116 ASTN2O75129 1339 aaPredicted RBP17.5■□□□□ 0.39
SHMT2-217ENST00000555116 F8W031 263 aaPredicted RBP17.5■□□□□ 0.39
SHMT2-217ENST00000555116 ZBED3Q96IU2 234 aaPredicted RBP17.5■□□□□ 0.39
SHMT2-217ENST00000555116 SCARF1Q14162 830 aa17.5■□□□□ 0.39
SHMT2-217ENST00000555116 RHPN1Q8TCX5 695 aa17.5■□□□□ 0.39
SHMT2-217ENST00000555116 EAF2Q96CJ1 260 aaPredicted RBP17.5■□□□□ 0.39
SHMT2-217ENST00000555116 DBNDD2Q9BQY9 259 aa17.5■□□□□ 0.39
SHMT2-217ENST00000555116 DENND2AQ9ULE3 1009 aa17.5■□□□□ 0.39
SHMT2-217ENST00000555116 RASGRF1Q13972 1273 aa17.49■□□□□ 0.39
SHMT2-217ENST00000555116 WDR66Q8TBY9 1149 aa17.49■□□□□ 0.39
SHMT2-217ENST00000555116 WNT10BO00744 389 aa17.48■□□□□ 0.39
SHMT2-217ENST00000555116 RAB11FIP3O75154 756 aa17.48■□□□□ 0.39
SHMT2-217ENST00000555116 NBPF9Q3BBW0 867 aa17.48■□□□□ 0.39
SHMT2-217ENST00000555116 GORABQ5T7V8 394 aa17.48■□□□□ 0.39
SHMT2-217ENST00000555116 MTMR14Q8NCE2 650 aa17.48■□□□□ 0.39
SHMT2-217ENST00000555116 KIF1BPQ96EK5 621 aa17.48■□□□□ 0.39
SHMT2-217ENST00000555116 DBNLQ9UJU6 430 aaKnown RBP17.48■□□□□ 0.39
SHMT2-217ENST00000555116 TTF2Q9UNY4 1162 aaKnown RBP17.48■□□□□ 0.39
SHMT2-217ENST00000555116 PDS5AQ29RF7 1337 aaKnown RBP17.48■□□□□ 0.39
SHMT2-217ENST00000555116 ARID4AP29374 1257 aaPredicted RBP17.48■□□□□ 0.39
SHMT2-217ENST00000555116 GLIS2Q9BZE0 524 aaPredicted RBP17.48■□□□□ 0.39
SHMT2-217ENST00000555116 CCDC8Q9H0W5 538 aaPredicted RBP17.48■□□□□ 0.39
SHMT2-217ENST00000555116 IL1RAPL2Q9NP60 686 aa17.48■□□□□ 0.39
SHMT2-217ENST00000555116 TLR7Q9NYK1 1049 aaKnown RBP17.48■□□□□ 0.39
SHMT2-217ENST00000555116 GGA3Q9NZ52 723 aa17.48■□□□□ 0.39
SHMT2-217ENST00000555116 SUGT1Q9Y2Z0 365 aa17.48■□□□□ 0.39
SHMT2-217ENST00000555116 PCDHAC2Q9Y5I4 1007 aa17.48■□□□□ 0.39
SHMT2-217ENST00000555116 SALL1Q9NSC2 1324 aa17.47■□□□□ 0.39
SHMT2-217ENST00000555116 APBB1O00213 710 aa17.47■□□□□ 0.39
SHMT2-217ENST00000555116 APLP1P51693 650 aa17.47■□□□□ 0.39
SHMT2-217ENST00000555116 FMR1Q06787 632 aaKnown RBP eCLIP17.47■□□□□ 0.392e-11■■■■□ 22.1
SHMT2-217ENST00000555116 CFAP100Q494V2 611 aa17.47■□□□□ 0.39
SHMT2-217ENST00000555116 DCTPP1Q9H773 170 aa17.47■□□□□ 0.39
SHMT2-217ENST00000555116 MYO5AQ9Y4I1 1855 aaKnown RBP17.46■□□□□ 0.39
SHMT2-217ENST00000555116 TRAF5O00463 557 aa17.46■□□□□ 0.39
SHMT2-217ENST00000555116 DLGAP5Q15398 846 aa17.46■□□□□ 0.39
SHMT2-217ENST00000555116 ANGEL2Q5VTE6 544 aaKnown RBP17.46■□□□□ 0.39
SHMT2-217ENST00000555116 CDC37L1Q7L3B6 337 aa17.46■□□□□ 0.39
SHMT2-217ENST00000555116 EXOC6Q8TAG9 804 aa17.46■□□□□ 0.39
SHMT2-217ENST00000555116 HMG20BQ9P0W2 317 aa17.46■□□□□ 0.39
SHMT2-217ENST00000555116 MYH2Q9UKX2 1941 aa17.46■□□□□ 0.39
SHMT2-217ENST00000555116 UQCRFS1P1P0C7P4 283 aa17.46■□□□□ 0.38
SHMT2-217ENST00000555116 AAMPQ13685 434 aa17.46■□□□□ 0.38
SHMT2-217ENST00000555116 USP48Q86UV5 1035 aa17.46■□□□□ 0.38
SHMT2-217ENST00000555116 AACSQ86V21 672 aa17.46■□□□□ 0.38
SHMT2-217ENST00000555116 DCPSQ96C86 337 aaKnown RBP17.46■□□□□ 0.38
SHMT2-217ENST00000555116 SERPINA10Q9UK55 444 aa17.46■□□□□ 0.38
SHMT2-217ENST00000555116 PITPNM2Q9BZ72 1349 aa17.45■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms