RNA–Protein interactions for RNA: ENST00000554928.1

SYNE2-214, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 3

Gene SYNE2, Length 1,048 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-214ENST00000554928 PSME4Q14997 1843 aa15.34■□□□□ 0.05
SYNE2-214ENST00000554928 RPS12P25398 132 aaKnown RBP15.34■□□□□ 0.05
SYNE2-214ENST00000554928 TIMM10P62072 90 aa15.34■□□□□ 0.05
SYNE2-214ENST00000554928 HTRA3P83110 453 aa15.34■□□□□ 0.05
SYNE2-214ENST00000554928 GRIK5Q16478 980 aa15.34■□□□□ 0.05
SYNE2-214ENST00000554928 ATP2B3Q16720 1220 aa15.34■□□□□ 0.05
SYNE2-214ENST00000554928 DLK2Q6UY11 383 aa15.34■□□□□ 0.05
SYNE2-214ENST00000554928 LPIN2Q92539 896 aa15.34■□□□□ 0.05
SYNE2-214ENST00000554928 CLEC11AQ9Y240 323 aa15.34■□□□□ 0.05
SYNE2-214ENST00000554928 ZNF609O15014 1411 aa15.34■□□□□ 0.05
SYNE2-214ENST00000554928 COL1A1P02452 1464 aaPredicted RBP15.33■□□□□ 0.05
SYNE2-214ENST00000554928 SURF6O75683 361 aaKnown RBP15.33■□□□□ 0.04
SYNE2-214ENST00000554928 IFIT1P09914 478 aaKnown RBP15.33■□□□□ 0.04
SYNE2-214ENST00000554928 SLC5A1P13866 664 aa15.33■□□□□ 0.04
SYNE2-214ENST00000554928 ZNF280AP59817 542 aaPredicted RBP15.33■□□□□ 0.04
SYNE2-214ENST00000554928 FSTL1Q12841 308 aa15.33■□□□□ 0.04
SYNE2-214ENST00000554928 USP50Q70EL3 339 aaPredicted RBP15.33■□□□□ 0.04
SYNE2-214ENST00000554928 PNMA8AQ86V59 439 aaPredicted RBP15.33■□□□□ 0.04
SYNE2-214ENST00000554928 KIAA0825Q8IV33 1275 aa15.33■□□□□ 0.04
SYNE2-214ENST00000554928 AGBL3Q8NEM8 1001 aa15.33■□□□□ 0.04
SYNE2-214ENST00000554928 PCDHAC2Q9Y5I4 1007 aa15.33■□□□□ 0.04
SYNE2-214ENST00000554928 H7C1D1 291 aa15.32■□□□□ 0.04
SYNE2-214ENST00000554928 ITGBL1O95965 494 aaPredicted RBP15.32■□□□□ 0.04
SYNE2-214ENST00000554928 PHKA1P46020 1223 aa15.32■□□□□ 0.04
SYNE2-214ENST00000554928 CHAF1AQ13111 956 aaPredicted RBP15.32■□□□□ 0.04
SYNE2-214ENST00000554928 G3BP1Q13283 466 aaKnown RBP eCLIP15.32■□□□□ 0.04
SYNE2-214ENST00000554928 CRBNQ96SW2 442 aa15.32■□□□□ 0.04
SYNE2-214ENST00000554928 NOP58Q9Y2X3 529 aaKnown RBP15.32■□□□□ 0.04
SYNE2-214ENST00000554928 A0A1B0GUL7 405 aa15.31■□□□□ 0.04
SYNE2-214ENST00000554928 F8W031 263 aaPredicted RBP15.31■□□□□ 0.04
SYNE2-214ENST00000554928 USP17L8P0C7I0 530 aa15.31■□□□□ 0.04
SYNE2-214ENST00000554928 HSPA6P17066 643 aa15.31■□□□□ 0.04
SYNE2-214ENST00000554928 KIF4BQ2VIQ3 1234 aa15.31■□□□□ 0.04
SYNE2-214ENST00000554928 EXOC6BQ9Y2D4 811 aa15.31■□□□□ 0.04
SYNE2-214ENST00000554928 AOX1Q06278 1338 aa15.31■□□□□ 0.04
SYNE2-214ENST00000554928 FAM205AQ6ZU69 1335 aa15.31■□□□□ 0.04
SYNE2-214ENST00000554928 TRAF5O00463 557 aa15.3■□□□□ 0.04
SYNE2-214ENST00000554928 CAVIN4Q5BKX8 364 aa15.3■□□□□ 0.04
SYNE2-214ENST00000554928 VPS37DQ86XT2 251 aa15.3■□□□□ 0.04
SYNE2-214ENST00000554928 CNTROBQ8N137 903 aa15.3■□□□□ 0.04
SYNE2-214ENST00000554928 XAGE2Q96GT9 111 aa15.3■□□□□ 0.04
SYNE2-214ENST00000554928 SCAF8Q9UPN6 1271 aaKnown RBP15.3■□□□□ 0.04
SYNE2-214ENST00000554928 PASKQ96RG2 1323 aa15.29■□□□□ 0.04
SYNE2-214ENST00000554928 ZBTB22O15209 634 aa15.29■□□□□ 0.04
SYNE2-214ENST00000554928 GLIS2Q9BZE0 524 aaPredicted RBP15.29■□□□□ 0.04
SYNE2-214ENST00000554928 MYOZ2Q9NPC6 264 aa15.29■□□□□ 0.04
SYNE2-214ENST00000554928 PGAP2Q9UHJ9 254 aa15.29■□□□□ 0.04
SYNE2-214ENST00000554928 MYO3BQ8WXR4 1341 aa15.28■□□□□ 0.04
SYNE2-214ENST00000554928 OS9Q13438 667 aaPredicted RBP15.28■□□□□ 0.04
SYNE2-214ENST00000554928 SCARF1Q14162 830 aa15.28■□□□□ 0.04
SYNE2-214ENST00000554928 NBPF9Q3BBW0 867 aa15.28■□□□□ 0.04
SYNE2-214ENST00000554928 MFSD14BQ5SR56 506 aa15.28■□□□□ 0.04
SYNE2-214ENST00000554928 CCDC102BQ68D86 513 aa15.28■□□□□ 0.04
SYNE2-214ENST00000554928 RPAP2Q8IXW5 612 aaPredicted RBP15.28■□□□□ 0.04
SYNE2-214ENST00000554928 NEUROD6Q96NK8 337 aa15.28■□□□□ 0.04
SYNE2-214ENST00000554928 TLR7Q9NYK1 1049 aaKnown RBP15.28■□□□□ 0.04
SYNE2-214ENST00000554928 PCDHB15Q9Y5E8 787 aa15.28■□□□□ 0.04
SYNE2-214ENST00000554928 APBB1O00213 710 aa15.27■□□□□ 0.04
SYNE2-214ENST00000554928 TNNI3KQ59H18 835 aa15.27■□□□□ 0.04
SYNE2-214ENST00000554928 ZBED3Q96IU2 234 aaPredicted RBP15.27■□□□□ 0.04
SYNE2-214ENST00000554928 DBNDD2Q9BQY9 259 aa15.27■□□□□ 0.04
SYNE2-214ENST00000554928 GGA3Q9NZ52 723 aa15.27■□□□□ 0.04
SYNE2-214ENST00000554928 SUPT16HQ9Y5B9 1047 aaKnown RBP15.27■□□□□ 0.04
SYNE2-214ENST00000554928 FPGT-TNNI3KV9GXZ4 949 aa15.27■□□□□ 0.04
SYNE2-214ENST00000554928 ARAP2Q8WZ64 1704 aa15.26■□□□□ 0.03
SYNE2-214ENST00000554928 ADM5C9JUS6 153 aa15.26■□□□□ 0.03
SYNE2-214ENST00000554928 FRAT2O75474 233 aaPredicted RBP15.26■□□□□ 0.03
SYNE2-214ENST00000554928 FKBP1AP62942 108 aaKnown RBP15.26■□□□□ 0.03
SYNE2-214ENST00000554928 PI16Q6UXB8 463 aa15.26■□□□□ 0.03
SYNE2-214ENST00000554928 USP48Q86UV5 1035 aa15.26■□□□□ 0.03
SYNE2-214ENST00000554928 EAF2Q96CJ1 260 aaPredicted RBP15.26■□□□□ 0.03
SYNE2-214ENST00000554928 IL1RAPL2Q9NP60 686 aa15.26■□□□□ 0.03
SYNE2-214ENST00000554928 AKAP2Q9Y2D5 859 aa15.26■□□□□ 0.03
SYNE2-214ENST00000554928 WNT10BO00744 389 aa15.25■□□□□ 0.03
SYNE2-214ENST00000554928 APLP1P51693 650 aa15.25■□□□□ 0.03
SYNE2-214ENST00000554928 RASGRF1Q13972 1273 aa15.25■□□□□ 0.03
SYNE2-214ENST00000554928 ANGEL2Q5VTE6 544 aaKnown RBP15.25■□□□□ 0.03
SYNE2-214ENST00000554928 ZC3H15Q8WU90 426 aaKnown RBP15.25■□□□□ 0.03
SYNE2-214ENST00000554928 CCDC8Q9H0W5 538 aaPredicted RBP15.25■□□□□ 0.03
SYNE2-214ENST00000554928 DBNLQ9UJU6 430 aaKnown RBP15.25■□□□□ 0.03
SYNE2-214ENST00000554928 TTF2Q9UNY4 1162 aaKnown RBP15.25■□□□□ 0.03
SYNE2-214ENST00000554928 CFAP100Q494V2 611 aa15.24■□□□□ 0.03
SYNE2-214ENST00000554928 OGFOD1Q8N543 542 aa15.24■□□□□ 0.03
SYNE2-214ENST00000554928 GPR108Q9NPR9 543 aa15.24■□□□□ 0.03
SYNE2-214ENST00000554928 CEP350Q5VT06 3117 aa15.24■□□□□ 0.03
SYNE2-214ENST00000554928 PRDX5P30044 214 aa15.23■□□□□ 0.03
SYNE2-214ENST00000554928 CST9Q5W186 159 aa15.23■□□□□ 0.03
SYNE2-214ENST00000554928 KRT26Q7Z3Y9 468 aa15.23■□□□□ 0.03
SYNE2-214ENST00000554928 EXOC6Q8TAG9 804 aa15.23■□□□□ 0.03
SYNE2-214ENST00000554928 RHPN1Q8TCX5 695 aa15.23■□□□□ 0.03
SYNE2-214ENST00000554928 PRMT6Q96LA8 375 aaPredicted RBP15.23■□□□□ 0.03
SYNE2-214ENST00000554928 BCL11AQ9H165 835 aa15.23■□□□□ 0.03
SYNE2-214ENST00000554928 CHMP4BQ9H444 224 aaKnown RBP15.23■□□□□ 0.03
SYNE2-214ENST00000554928 HMG20BQ9P0W2 317 aa15.23■□□□□ 0.03
SYNE2-214ENST00000554928 HDAC9Q9UKV0 1011 aa15.23■□□□□ 0.03
SYNE2-214ENST00000554928 HMMRO75330 724 aa15.22■□□□□ 0.03
SYNE2-214ENST00000554928 MCAMP43121 646 aa15.22■□□□□ 0.03
SYNE2-214ENST00000554928 IRX6P78412 446 aaPredicted RBP15.22■□□□□ 0.03
SYNE2-214ENST00000554928 PRAMEF18Q5VWM3 479 aa15.22■□□□□ 0.03
SYNE2-214ENST00000554928 CLRN2A0PK11 232 aa15.21■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms