RNA–Protein interactions for RNA: ENST00000553683.1

VRK1-202, Transcript of vaccinia related kinase 1, humanhuman

TSL 3

Gene VRK1, Length 247 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-202ENST00000553683 IKBKEQ14164 716 aa6.09□□□□□ -1.43
VRK1-202ENST00000553683 USPL1Q5W0Q7 1092 aa6.09□□□□□ -1.43
VRK1-202ENST00000553683 ALG1LQ6GMV1 187 aa6.09□□□□□ -1.43
VRK1-202ENST00000553683 Q6ZS46 218 aa6.09□□□□□ -1.43
VRK1-202ENST00000553683 HHIPQ96QV1 700 aa6.09□□□□□ -1.43
VRK1-202ENST00000553683 SRCIN1Q9C0H9 1055 aa6.09□□□□□ -1.43
VRK1-202ENST00000553683 EHD4Q9H223 541 aa6.09□□□□□ -1.43
VRK1-202ENST00000553683 NPHS2Q9NP85 383 aa6.09□□□□□ -1.43
VRK1-202ENST00000553683 LATS2Q9NRM7 1088 aa6.09□□□□□ -1.43
VRK1-202ENST00000553683 NLRP2Q9NX02 1062 aa6.09□□□□□ -1.43
VRK1-202ENST00000553683 USP21Q9UK80 565 aa6.09□□□□□ -1.43
VRK1-202ENST00000553683 SHISA2Q6UWI4 295 aa6.08□□□□□ -1.44
VRK1-202ENST00000553683 GALNT11Q8NCW6 608 aa6.08□□□□□ -1.44
VRK1-202ENST00000553683 DDX54Q8TDD1 881 aaKnown RBP6.08□□□□□ -1.44
VRK1-202ENST00000553683 WFDC12Q8WWY7 111 aa6.08□□□□□ -1.44
VRK1-202ENST00000553683 FRMD6Q96NE9 622 aa6.08□□□□□ -1.44
VRK1-202ENST00000553683 SSBP4Q9BWG4 385 aaPredicted RBP6.08□□□□□ -1.44
VRK1-202ENST00000553683 CLEC4MQ9H2X3 399 aaPredicted RBP6.08□□□□□ -1.44
VRK1-202ENST00000553683 AKTIPQ9H8T0 292 aa6.08□□□□□ -1.44
VRK1-202ENST00000553683 F8W735 103 aaPredicted RBP6.07□□□□□ -1.44
VRK1-202ENST00000553683 SOX1O00570 391 aaPredicted RBP6.07□□□□□ -1.44
VRK1-202ENST00000553683 TRPA1O75762 1119 aa6.07□□□□□ -1.44
VRK1-202ENST00000553683 ESRRAP11474 423 aaPredicted RBP6.07□□□□□ -1.44
VRK1-202ENST00000553683 ATP2B2Q01814 1243 aa6.07□□□□□ -1.44
VRK1-202ENST00000553683 ZC3HAV1Q7Z2W4 902 aaKnown RBP6.07□□□□□ -1.44
VRK1-202ENST00000553683 HOMEZQ8IX15 550 aa6.07□□□□□ -1.44
VRK1-202ENST00000553683 DZIP1LQ8IYY4 767 aaKnown RBP6.07□□□□□ -1.44
VRK1-202ENST00000553683 ASAP3Q8TDY4 903 aa6.07□□□□□ -1.44
VRK1-202ENST00000553683 PNMA6FA0A0J9YX94 578 aa6.06□□□□□ -1.44
VRK1-202ENST00000553683 TMEM238LA0A1B0GVL6 79 aa6.06□□□□□ -1.44
VRK1-202ENST00000553683 MEGF11A6BM72 1044 aa6.06□□□□□ -1.44
VRK1-202ENST00000553683 GADD45BO75293 160 aaPredicted RBP6.06□□□□□ -1.44
VRK1-202ENST00000553683 H2AFB1P0C5Y9 115 aa6.06□□□□□ -1.44
VRK1-202ENST00000553683 H2AFB2P0C5Z0 115 aa6.06□□□□□ -1.44
VRK1-202ENST00000553683 GRIA4P48058 902 aa6.06□□□□□ -1.44
VRK1-202ENST00000553683 FOXD4L6Q3SYB3 417 aaPredicted RBP6.06□□□□□ -1.44
VRK1-202ENST00000553683 HP1BP3Q5SSJ5 553 aaPredicted RBP6.06□□□□□ -1.44
VRK1-202ENST00000553683 FOXD4L3Q6VB84 417 aaPredicted RBP6.06□□□□□ -1.44
VRK1-202ENST00000553683 ANKRD24Q8TF21 1146 aa6.06□□□□□ -1.44
VRK1-202ENST00000553683 KLHDC7BQ96G42 594 aa6.06□□□□□ -1.44
VRK1-202ENST00000553683 ABCB6Q9NP58 842 aa6.06□□□□□ -1.44
VRK1-202ENST00000553683 B3GALT4O96024 378 aa6.05□□□□□ -1.44
VRK1-202ENST00000553683 NOS3P29474 1203 aa6.05□□□□□ -1.44
VRK1-202ENST00000553683 PCDH1Q08174 1060 aa6.05□□□□□ -1.44
VRK1-202ENST00000553683 GRM2Q14416 872 aa6.05□□□□□ -1.44
VRK1-202ENST00000553683 DUOXA2Q1HG44 320 aa6.05□□□□□ -1.44
VRK1-202ENST00000553683 UVSSAQ2YD98 709 aa6.05□□□□□ -1.44
VRK1-202ENST00000553683 TXNDC11Q6PKC3 985 aa6.05□□□□□ -1.44
VRK1-202ENST00000553683 SLC51AQ86UW1 340 aa6.05□□□□□ -1.44
VRK1-202ENST00000553683 GLIS3Q8NEA6 775 aa6.05□□□□□ -1.44
VRK1-202ENST00000553683 EPS8L3Q8TE67 593 aaKnown RBP6.05□□□□□ -1.44
VRK1-202ENST00000553683 CEP41Q9BYV8 373 aa6.05□□□□□ -1.44
VRK1-202ENST00000553683 ZNF576Q9H609 170 aa6.05□□□□□ -1.44
VRK1-202ENST00000553683 CYP11A1P05108 521 aa6.04□□□□□ -1.44
VRK1-202ENST00000553683 IREB2P48200 963 aaKnown RBP6.04□□□□□ -1.44
VRK1-202ENST00000553683 FOXD4L4Q8WXT5 416 aaPredicted RBP6.04□□□□□ -1.44
VRK1-202ENST00000553683 RNF208Q9H0X6 261 aa6.04□□□□□ -1.44
VRK1-202ENST00000553683 TPSG1Q9NRR2 321 aa6.04□□□□□ -1.44
VRK1-202ENST00000553683 SYNGAP1Q96PV0 1343 aa6.03□□□□□ -1.44
VRK1-202ENST00000553683 ADAM11O75078 769 aa6.03□□□□□ -1.44
VRK1-202ENST00000553683 MAPK8P45983 427 aa6.03□□□□□ -1.44
VRK1-202ENST00000553683 ZNF423Q2M1K9 1284 aa6.03□□□□□ -1.44
VRK1-202ENST00000553683 SPRED3Q2MJR0 410 aa6.03□□□□□ -1.44
VRK1-202ENST00000553683 LARP7Q4G0J3 582 aaKnown RBP eCLIP6.03□□□□□ -1.44
VRK1-202ENST00000553683 NKAPLQ5M9Q1 402 aa6.03□□□□□ -1.44
VRK1-202ENST00000553683 ANKRD34AQ69YU3 496 aa6.03□□□□□ -1.44
VRK1-202ENST00000553683 DNAJC14Q6Y2X3 702 aaPredicted RBP6.03□□□□□ -1.44
VRK1-202ENST00000553683 KIAA1211Q6ZU35 1233 aa6.03□□□□□ -1.44
VRK1-202ENST00000553683 CARD10Q9BWT7 1032 aa6.03□□□□□ -1.44
VRK1-202ENST00000553683 BCO2Q9BYV7 579 aa6.03□□□□□ -1.44
VRK1-202ENST00000553683 SUGCTQ9HAC7 445 aa6.03□□□□□ -1.44
VRK1-202ENST00000553683 KCNK4Q9NYG8 393 aa6.03□□□□□ -1.44
VRK1-202ENST00000553683 PPM1HQ9ULR3 514 aa6.03□□□□□ -1.44
VRK1-202ENST00000553683 SPG7Q9UQ90 795 aa6.03□□□□□ -1.44
VRK1-202ENST00000553683 ANKRD33BA6NCL7 494 aa6.02□□□□□ -1.45
VRK1-202ENST00000553683 METTL12A8MUP2 240 aa6.02□□□□□ -1.45
VRK1-202ENST00000553683 PRPF40AO75400 957 aaKnown RBP6.02□□□□□ -1.45
VRK1-202ENST00000553683 P4HBP07237 508 aaKnown RBP6.02□□□□□ -1.45
VRK1-202ENST00000553683 CDC25BP30305 580 aa6.02□□□□□ -1.45
VRK1-202ENST00000553683 AP3B2Q13367 1082 aa6.02□□□□□ -1.45
VRK1-202ENST00000553683 RSPO4Q2I0M5 234 aaPredicted RBP6.02□□□□□ -1.45
VRK1-202ENST00000553683 CCDC27Q2M243 656 aa6.02□□□□□ -1.45
VRK1-202ENST00000553683 ACAD11Q709F0 780 aa6.02□□□□□ -1.45
VRK1-202ENST00000553683 SLC7A3Q8WY07 619 aa6.02□□□□□ -1.45
VRK1-202ENST00000553683 NRSN2Q9GZP1 204 aa6.02□□□□□ -1.45
VRK1-202ENST00000553683 ZBTB7CA1YPR0 619 aa6.01□□□□□ -1.45
VRK1-202ENST00000553683 K7ELQ4 463 aaPredicted RBP6.01□□□□□ -1.45
VRK1-202ENST00000553683 ADAM23O75077 832 aa6.01□□□□□ -1.45
VRK1-202ENST00000553683 LDHBP07195 334 aaKnown RBP6.01□□□□□ -1.45
VRK1-202ENST00000553683 GSTT1P30711 240 aa6.01□□□□□ -1.45
VRK1-202ENST00000553683 ITGAEP38570 1179 aa6.01□□□□□ -1.45
VRK1-202ENST00000553683 HNRNPUQ00839 825 aaKnown RBP eCLIP6.01□□□□□ -1.45
VRK1-202ENST00000553683 DOC2BQ14184 412 aa6.01□□□□□ -1.45
VRK1-202ENST00000553683 EXOSC6Q5RKV6 272 aaKnown RBP6.01□□□□□ -1.45
VRK1-202ENST00000553683 DTHD1Q6ZMT9 781 aa6.01□□□□□ -1.45
VRK1-202ENST00000553683 MEGF10Q96KG7 1140 aa6.01□□□□□ -1.45
VRK1-202ENST00000553683 TMPRSS13Q9BYE2 586 aa6.01□□□□□ -1.45
VRK1-202ENST00000553683 GZF1Q9H116 711 aaPredicted RBP6.01□□□□□ -1.45
VRK1-202ENST00000553683 LOC100289279A0A1B0GTE1 492 aa6□□□□□ -1.45
VRK1-202ENST00000553683 WISP1O95388 367 aa6□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms