RNA–Protein interactions for RNA: ENST00000553544.1

SRP54-203, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 491 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-203ENST00000553544 IGF2BP3O00425 579 aaKnown RBP eCLIP15.07■□□□□ 0
SRP54-203ENST00000553544 MYO1BO43795 1136 aa15.07■□□□□ 0
SRP54-203ENST00000553544 KCNJ4P48050 445 aa15.07■□□□□ 0
SRP54-203ENST00000553544 MTMR14Q8NCE2 650 aa15.07■□□□□ 0
SRP54-203ENST00000553544 TMEM106CQ9BVX2 250 aa15.07■□□□□ 0
SRP54-203ENST00000553544 EFCC1Q9HA90 598 aa15.07■□□□□ 0
SRP54-203ENST00000553544 CD209Q9NNX6 404 aa15.07■□□□□ 0
SRP54-203ENST00000553544 SPINK5Q9NQ38 1064 aaPredicted RBP15.07■□□□□ 0
SRP54-203ENST00000553544 VAMP4O75379 141 aa15.06■□□□□ 0
SRP54-203ENST00000553544 EN2P19622 333 aaPredicted RBP15.06■□□□□ 0
SRP54-203ENST00000553544 IREB2P48200 963 aaKnown RBP15.06■□□□□ 0
SRP54-203ENST00000553544 SP3Q02447 781 aa15.06■□□□□ 0
SRP54-203ENST00000553544 ARHGEF6Q15052 776 aa15.06■□□□□ 0
SRP54-203ENST00000553544 CD99L2Q8TCZ2 262 aa15.06■□□□□ 0
SRP54-203ENST00000553544 ARMC5Q96C12 935 aa15.06■□□□□ 0
SRP54-203ENST00000553544 CLMNQ96JQ2 1002 aa15.06■□□□□ 0
SRP54-203ENST00000553544 STK31Q9BXU1 1019 aa15.06■□□□□ 0
SRP54-203ENST00000553544 ITGA6P23229 1130 aa15.05■□□□□ -0
SRP54-203ENST00000553544 CRHR2Q13324 411 aa15.05■□□□□ -0
SRP54-203ENST00000553544 G2E3Q7L622 706 aa15.05■□□□□ -0
SRP54-203ENST00000553544 ZNF521Q96K83 1311 aa15.05■□□□□ -0
SRP54-203ENST00000553544 PSME4Q14997 1843 aa15.05■□□□□ -0
SRP54-203ENST00000553544 KIAA0100Q14667 2235 aaKnown RBP15.04■□□□□ -0
SRP54-203ENST00000553544 NEURL1BA8MQ27 555 aa15.04■□□□□ -0
SRP54-203ENST00000553544 USP2O75604 605 aaPredicted RBP15.04■□□□□ -0
SRP54-203ENST00000553544 SLC4A2P04920 1241 aa15.04■□□□□ -0
SRP54-203ENST00000553544 KLRK1P26718 216 aa15.04■□□□□ -0
SRP54-203ENST00000553544 EXOSC9Q06265 439 aaKnown RBP15.04■□□□□ -0
SRP54-203ENST00000553544 CWF19L2Q2TBE0 894 aaKnown RBP15.04■□□□□ -0
SRP54-203ENST00000553544 UBE3BQ7Z3V4 1068 aa15.04■□□□□ -0
SRP54-203ENST00000553544 NBPF11Q86T75 865 aa15.04■□□□□ -0
SRP54-203ENST00000553544 ANKRD13AQ8IZ07 590 aa15.04■□□□□ -0
SRP54-203ENST00000553544 HTTP42858 3142 aa15.03■□□□□ -0
SRP54-203ENST00000553544 COL1A1P02452 1464 aaPredicted RBP15.03■□□□□ -0
SRP54-203ENST00000553544 CENPFP49454 3210 aa15.03■□□□□ -0
SRP54-203ENST00000553544 TESPA1A2RU30 521 aaPredicted RBP15.03■□□□□ -0
SRP54-203ENST00000553544 CSF1RP07333 972 aa15.03■□□□□ -0
SRP54-203ENST00000553544 CHRNDQ07001 517 aa15.03■□□□□ -0
SRP54-203ENST00000553544 CFAP100Q494V2 611 aa15.03■□□□□ -0
SRP54-203ENST00000553544 NBPF12Q5TAG4 269 aaPredicted RBP15.03■□□□□ -0
SRP54-203ENST00000553544 PRMT6Q96LA8 375 aaPredicted RBP15.03■□□□□ -0
SRP54-203ENST00000553544 PTPN18Q99952 460 aa15.03■□□□□ -0
SRP54-203ENST00000553544 PLA2G12BQ9BX93 195 aa15.03■□□□□ -0
SRP54-203ENST00000553544 VEZTQ9HBM0 779 aa15.03■□□□□ -0
SRP54-203ENST00000553544 CLRN2A0PK11 232 aa15.02■□□□□ -0
SRP54-203ENST00000553544 SPDYE2BA6NHP3 402 aa15.02■□□□□ -0
SRP54-203ENST00000553544 F8W031 263 aaPredicted RBP15.02■□□□□ -0
SRP54-203ENST00000553544 SPDYE6P0CI01 402 aa15.02■□□□□ -0
SRP54-203ENST00000553544 GCKRQ14397 625 aa15.02■□□□□ -0
SRP54-203ENST00000553544 CERS5Q8N5B7 392 aa15.02■□□□□ -0
SRP54-203ENST00000553544 SPEF2Q9C093 1822 aa15.01□□□□□ -0.01
SRP54-203ENST00000553544 ANKRD18BA2A2Z9 1011 aa15.01□□□□□ -0.01
SRP54-203ENST00000553544 FXR1P51114 621 aaKnown RBP eCLIP15.01□□□□□ -0.01
SRP54-203ENST00000553544 RBM5P52756 815 aaKnown RBP eCLIP15.01□□□□□ -0.01
SRP54-203ENST00000553544 FKBP1AP62942 108 aaKnown RBP15.01□□□□□ -0.01
SRP54-203ENST00000553544 FLIIQ13045 1269 aa15.01□□□□□ -0.01
SRP54-203ENST00000553544 RASA3Q14644 834 aa15.01□□□□□ -0.01
SRP54-203ENST00000553544 C15orf52Q6ZUT6 534 aaKnown RBP15.01□□□□□ -0.01
SRP54-203ENST00000553544 MYH16Q9H6N6 1097 aa15.01□□□□□ -0.01
SRP54-203ENST00000553544 PCDHAC2Q9Y5I4 1007 aa15.01□□□□□ -0.01
SRP54-203ENST00000553544 TAF5LO75529 589 aa15□□□□□ -0.01
SRP54-203ENST00000553544 IL1R1P14778 569 aa15□□□□□ -0.01
SRP54-203ENST00000553544 GJA5P36382 358 aa15□□□□□ -0.01
SRP54-203ENST00000553544 ZNF804AQ7Z570 1209 aa15□□□□□ -0.01
SRP54-203ENST00000553544 ZFYVE28Q9HCC9 887 aa15□□□□□ -0.01
SRP54-203ENST00000553544 SNAP23O00161 211 aa14.99□□□□□ -0.01
SRP54-203ENST00000553544 TNFAIP1Q13829 316 aa14.99□□□□□ -0.01
SRP54-203ENST00000553544 SLC4A8Q2Y0W8 1093 aa14.99□□□□□ -0.01
SRP54-203ENST00000553544 SLC9C1Q4G0N8 1177 aa14.99□□□□□ -0.01
SRP54-203ENST00000553544 HELBQ8NG08 1087 aaPredicted RBP14.99□□□□□ -0.01
SRP54-203ENST00000553544 OPTNQ96CV9 577 aa14.99□□□□□ -0.01
SRP54-203ENST00000553544 ZNF333Q96JL9 665 aa14.99□□□□□ -0.01
SRP54-203ENST00000553544 ELP3Q9H9T3 547 aa14.99□□□□□ -0.01
SRP54-203ENST00000553544 COLQQ9Y215 455 aaPredicted RBP14.99□□□□□ -0.01
SRP54-203ENST00000553544 CCER2I3L3R5 266 aa14.98□□□□□ -0.01
SRP54-203ENST00000553544 WDHD1O75717 1129 aaPredicted RBP14.98□□□□□ -0.01
SRP54-203ENST00000553544 CASP7P55210 303 aa14.98□□□□□ -0.01
SRP54-203ENST00000553544 IFIT5Q13325 482 aaKnown RBP14.98□□□□□ -0.01
SRP54-203ENST00000553544 MS4A4AQ96JQ5 239 aa14.98□□□□□ -0.01
SRP54-203ENST00000553544 GTF2A2P52657 109 aa14.97□□□□□ -0.01
SRP54-203ENST00000553544 MAP3K9P80192 1104 aa14.97□□□□□ -0.01
SRP54-203ENST00000553544 CAP1Q01518 475 aa14.97□□□□□ -0.01
SRP54-203ENST00000553544 FKBP5Q13451 457 aaPredicted RBP14.97□□□□□ -0.01
SRP54-203ENST00000553544 DNAAF4Q8WXU2 420 aa14.97□□□□□ -0.01
SRP54-203ENST00000553544 IRS2Q9Y4H2 1338 aa14.96□□□□□ -0.01
SRP54-203ENST00000553544 SSC5DA1L4H1 1573 aa14.96□□□□□ -0.01
SRP54-203ENST00000553544 TAF1CQ15572 869 aaPredicted RBP14.96□□□□□ -0.01
SRP54-203ENST00000553544 LINS1Q8NG48 757 aa14.96□□□□□ -0.01
SRP54-203ENST00000553544 ZNF70Q9UC06 446 aaPredicted RBP14.96□□□□□ -0.01
SRP54-203ENST00000553544 JAG2Q9Y219 1238 aa14.96□□□□□ -0.01
SRP54-203ENST00000553544 CCL15-CCL14A0A0B4J2E2 113 aa14.95□□□□□ -0.02
SRP54-203ENST00000553544 PLIN1O60240 522 aa14.95□□□□□ -0.02
SRP54-203ENST00000553544 KIF22Q14807 665 aa14.95□□□□□ -0.02
SRP54-203ENST00000553544 CCL15Q16663 113 aa14.95□□□□□ -0.02
SRP54-203ENST00000553544 SPDYE2Q495Y8 402 aa14.95□□□□□ -0.02
SRP54-203ENST00000553544 PPP1R3FQ6ZSY5 799 aaPredicted RBP14.95□□□□□ -0.02
SRP54-203ENST00000553544 BRI3BPQ8WY22 251 aa14.95□□□□□ -0.02
SRP54-203ENST00000553544 TDRD3Q9H7E2 651 aaKnown RBP14.95□□□□□ -0.02
SRP54-203ENST00000553544 SERPINA10Q9UK55 444 aa14.95□□□□□ -0.02
SRP54-203ENST00000553544 CHMP3Q9Y3E7 222 aa14.95□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms