RNA–Protein interactions for RNA: ENST00000553289.5

SYNE2-208, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 5,261 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-208ENST00000553289 CCDC77Q9BR77 488 aa13.09□□□□□ -0.31
SYNE2-208ENST00000553289 HOMER2Q9NSB8 354 aa13.09□□□□□ -0.31
SYNE2-208ENST00000553289 TRAPPC8Q9Y2L5 1435 aa13.09□□□□□ -0.31
SYNE2-208ENST00000553289 C6orf163Q5TEZ5 329 aa13.09□□□□□ -0.31
SYNE2-208ENST00000553289 DZIP3Q86Y13 1208 aaKnown RBP13.09□□□□□ -0.31
SYNE2-208ENST00000553289 IQUBQ8NA54 791 aa13.09□□□□□ -0.31
SYNE2-208ENST00000553289 TTLL12Q14166 644 aaPredicted RBP13.08□□□□□ -0.31
SYNE2-208ENST00000553289 LLPHQ9BRT6 129 aaKnown RBP13.08□□□□□ -0.31
SYNE2-208ENST00000553289 ARHGAP30Q7Z6I6 1101 aaPredicted RBP13.08□□□□□ -0.32
SYNE2-208ENST00000553289 SMARCC2Q8TAQ2 1214 aa13.08□□□□□ -0.32
SYNE2-208ENST00000553289 IP6K1Q92551 441 aa13.08□□□□□ -0.32
SYNE2-208ENST00000553289 EYA1Q99502 592 aa13.08□□□□□ -0.32
SYNE2-208ENST00000553289 ZSWIM4Q9H7M6 989 aa13.08□□□□□ -0.32
SYNE2-208ENST00000553289 RNMTO43148 476 aaKnown RBP13.08□□□□□ -0.32
SYNE2-208ENST00000553289 APOBRQ0VD83 1088 aa13.08□□□□□ -0.32
SYNE2-208ENST00000553289 TFCP2Q12800 502 aa13.08□□□□□ -0.32
SYNE2-208ENST00000553289 TSNARE1Q96NA8 513 aa13.08□□□□□ -0.32
SYNE2-208ENST00000553289 CARD14Q9BXL6 1004 aa13.08□□□□□ -0.32
SYNE2-208ENST00000553289 ELP1O95163 1332 aa13.08□□□□□ -0.32
SYNE2-208ENST00000553289 IRS4O14654 1257 aaPredicted RBP13.08□□□□□ -0.32
SYNE2-208ENST00000553289 TPTE2Q6XPS3 522 aa13.08□□□□□ -0.32
SYNE2-208ENST00000553289 ZNF622Q969S3 477 aaKnown RBP eCLIP13.08□□□□□ -0.32
SYNE2-208ENST00000553289 CCDC42Q96M95 316 aa13.08□□□□□ -0.32
SYNE2-208ENST00000553289 PCDH11XQ9BZA7 1347 aa13.08□□□□□ -0.32
SYNE2-208ENST00000553289 PCDH11YQ9BZA8 1340 aa13.08□□□□□ -0.32
SYNE2-208ENST00000553289 PER1O15534 1290 aaPredicted RBP13.07□□□□□ -0.32
SYNE2-208ENST00000553289 PUF60Q9UHX1 559 aaKnown RBP13.07□□□□□ -0.32
SYNE2-208ENST00000553289 YTHDC2Q9H6S0 1430 aaKnown RBP13.07□□□□□ -0.32
SYNE2-208ENST00000553289 LMOD1P29536 600 aaPredicted RBP13.07□□□□□ -0.32
SYNE2-208ENST00000553289 CNGA4Q8IV77 575 aa13.07□□□□□ -0.32
SYNE2-208ENST00000553289 ZMYM4Q5VZL5 1548 aa13.07□□□□□ -0.32
SYNE2-208ENST00000553289 HOXC9P31274 260 aa13.07□□□□□ -0.32
SYNE2-208ENST00000553289 SREK1Q8WXA9 508 aaKnown RBP13.07□□□□□ -0.32
SYNE2-208ENST00000553289 ZNF830Q96NB3 372 aaPredicted RBP13.07□□□□□ -0.32
SYNE2-208ENST00000553289 B4DLN1 442 aa13.07□□□□□ -0.32
SYNE2-208ENST00000553289 MRPL12P52815 198 aaKnown RBP13.07□□□□□ -0.32
SYNE2-208ENST00000553289 EDC4Q6P2E9 1401 aaKnown RBP13.07□□□□□ -0.32
SYNE2-208ENST00000553289 NFATC2IPQ8NCF5 419 aa13.07□□□□□ -0.32
SYNE2-208ENST00000553289 LRRC45Q96CN5 670 aa13.07□□□□□ -0.32
SYNE2-208ENST00000553289 TMEM87BQ96K49 555 aa13.07□□□□□ -0.32
SYNE2-208ENST00000553289 FAM160A1Q05DH4 1040 aa13.06□□□□□ -0.32
SYNE2-208ENST00000553289 CWF19L2Q2TBE0 894 aaKnown RBP13.06□□□□□ -0.32
SYNE2-208ENST00000553289 DTHD1Q6ZMT9 781 aa13.06□□□□□ -0.32
SYNE2-208ENST00000553289 SLTMQ9NWH9 1034 aaKnown RBP eCLIP13.06□□□□□ -0.32
SYNE2-208ENST00000553289 SPDYE3A6NKU9 549 aa13.06□□□□□ -0.32
SYNE2-208ENST00000553289 DDB1Q16531 1140 aa13.06□□□□□ -0.32
SYNE2-208ENST00000553289 RILPL1Q5EBL4 403 aa13.06□□□□□ -0.32
SYNE2-208ENST00000553289 NEK11Q8NG66 645 aa13.06□□□□□ -0.32
SYNE2-208ENST00000553289 SIRT1Q96EB6 747 aa13.06□□□□□ -0.32
SYNE2-208ENST00000553289 MMRN2Q9H8L6 949 aa13.06□□□□□ -0.32
SYNE2-208ENST00000553289 HS2ST1Q7LGA3 356 aa13.06□□□□□ -0.32
SYNE2-208ENST00000553289 PHACTR3Q96KR7 559 aa13.06□□□□□ -0.32
SYNE2-208ENST00000553289 IMPG2Q9BZV3 1241 aa13.06□□□□□ -0.32
SYNE2-208ENST00000553289 TSGA10Q9BZW7 698 aa13.06□□□□□ -0.32
SYNE2-208ENST00000553289 RPS6KB1P23443 525 aa13.06□□□□□ -0.32
SYNE2-208ENST00000553289 MYL5Q02045 173 aa13.06□□□□□ -0.32
SYNE2-208ENST00000553289 MAGEB6Q8N7X4 407 aa13.06□□□□□ -0.32
SYNE2-208ENST00000553289 BICC1Q9H694 974 aaKnown RBP13.06□□□□□ -0.32
SYNE2-208ENST00000553289 C19orf44Q9H6X5 657 aa13.06□□□□□ -0.32
SYNE2-208ENST00000553289 OGFOD1Q8N543 542 aa13.05□□□□□ -0.32
SYNE2-208ENST00000553289 PPM1EQ8WY54 764 aa13.05□□□□□ -0.32
SYNE2-208ENST00000553289 TNNQ9UQP3 1299 aa13.05□□□□□ -0.32
SYNE2-208ENST00000553289 SBNO1A3KN83 1393 aa13.05□□□□□ -0.32
SYNE2-208ENST00000553289 ATP2A1O14983 1001 aa13.05□□□□□ -0.32
SYNE2-208ENST00000553289 ZNF219Q9P2Y4 722 aaPredicted RBP13.05□□□□□ -0.32
SYNE2-208ENST00000553289 DNMT1P26358 1616 aaKnown RBP13.05□□□□□ -0.32
SYNE2-208ENST00000553289 KIF24Q5T7B8 1368 aa13.05□□□□□ -0.32
SYNE2-208ENST00000553289 TRIM14Q14142 442 aa13.05□□□□□ -0.32
SYNE2-208ENST00000553289 DENND2AQ9ULE3 1009 aa13.05□□□□□ -0.32
SYNE2-208ENST00000553289 CHMP4BP1P59074 171 aa13.05□□□□□ -0.32
SYNE2-208ENST00000553289 UBXN1Q04323 297 aa13.05□□□□□ -0.32
SYNE2-208ENST00000553289 TUBB2AQ13885 445 aa13.05□□□□□ -0.32
SYNE2-208ENST00000553289 TIGD1Q96MW7 591 aa13.05□□□□□ -0.32
SYNE2-208ENST00000553289 TTC14Q96N46 770 aa13.05□□□□□ -0.32
SYNE2-208ENST00000553289 TUBB2BQ9BVA1 445 aa13.05□□□□□ -0.32
SYNE2-208ENST00000553289 MCM9Q9NXL9 1143 aa13.05□□□□□ -0.32
SYNE2-208ENST00000553289 ZRANB1Q9UGI0 708 aa13.05□□□□□ -0.32
SYNE2-208ENST00000553289 LUC7L2Q9Y383 392 aaKnown RBP13.05□□□□□ -0.32
SYNE2-208ENST00000553289 A0A1W2PRG0 241 aa13.04□□□□□ -0.32
SYNE2-208ENST00000553289 GCP02774 474 aa13.04□□□□□ -0.32
SYNE2-208ENST00000553289 HSPA4P34932 840 aa13.04□□□□□ -0.32
SYNE2-208ENST00000553289 SLC4A8Q2Y0W8 1093 aa13.04□□□□□ -0.32
SYNE2-208ENST00000553289 PLBD2Q8NHP8 589 aa13.04□□□□□ -0.32
SYNE2-208ENST00000553289 ADAMTS12P58397 1594 aa13.04□□□□□ -0.32
SYNE2-208ENST00000553289 SPDYE4A6NLX3 237 aa13.04□□□□□ -0.32
SYNE2-208ENST00000553289 PHACTR2O75167 634 aa13.04□□□□□ -0.32
SYNE2-208ENST00000553289 LRRC59Q96AG4 307 aaKnown RBP13.04□□□□□ -0.32
SYNE2-208ENST00000553289 SYNCQ9H7C4 482 aa13.04□□□□□ -0.32
SYNE2-208ENST00000553289 IQSEC3Q9UPP2 1182 aaPredicted RBP13.04□□□□□ -0.32
SYNE2-208ENST00000553289 IBSPP21815 317 aaPredicted RBP13.04□□□□□ -0.32
SYNE2-208ENST00000553289 PLCD1P51178 756 aa13.04□□□□□ -0.32
SYNE2-208ENST00000553289 IFNKQ9P0W0 207 aa13.04□□□□□ -0.32
SYNE2-208ENST00000553289 MAP3K19Q56UN5 1328 aa13.04□□□□□ -0.32
SYNE2-208ENST00000553289 EYA2O00167 538 aa13.04□□□□□ -0.32
SYNE2-208ENST00000553289 FAM13AO94988 1023 aa13.04□□□□□ -0.32
SYNE2-208ENST00000553289 FERP16591 822 aa13.04□□□□□ -0.32
SYNE2-208ENST00000553289 RPL13P26373 211 aaKnown RBP13.04□□□□□ -0.32
SYNE2-208ENST00000553289 CERS3Q8IU89 383 aa13.04□□□□□ -0.32
SYNE2-208ENST00000553289 ARFGAP2Q8N6H7 521 aa13.04□□□□□ -0.32
SYNE2-208ENST00000553289 CCDC97Q96F63 343 aaPredicted RBP13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms