RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 CHRDL2Q6WN34 429 aa16.69■□□□□ 0.26
VPS29-211ENST00000553128 MTMR14Q8NCE2 650 aa16.69■□□□□ 0.26
VPS29-211ENST00000553128 CNKSR2Q8WXI2 1034 aa16.69■□□□□ 0.26
VPS29-211ENST00000553128 RUNDC1Q96C34 613 aa16.69■□□□□ 0.26
VPS29-211ENST00000553128 MS4A4AQ96JQ5 239 aa16.69■□□□□ 0.26
VPS29-211ENST00000553128 PRMT6Q96LA8 375 aaPredicted RBP16.69■□□□□ 0.26
VPS29-211ENST00000553128 ELP3Q9H9T3 547 aa16.69■□□□□ 0.26
VPS29-211ENST00000553128 CD209Q9NNX6 404 aa16.69■□□□□ 0.26
VPS29-211ENST00000553128 A0A0C4DFX4 3053 aa16.69■□□□□ 0.26
VPS29-211ENST00000553128 CEP290O15078 2479 aa16.69■□□□□ 0.26
VPS29-211ENST00000553128 CWF19L2Q2TBE0 894 aaKnown RBP16.68■□□□□ 0.26
VPS29-211ENST00000553128 SLC4A8Q2Y0W8 1093 aa16.68■□□□□ 0.26
VPS29-211ENST00000553128 CFAP100Q494V2 611 aa16.68■□□□□ 0.26
VPS29-211ENST00000553128 CDAN1Q8IWY9 1227 aa16.68■□□□□ 0.26
VPS29-211ENST00000553128 C8orf58Q8NAV2 365 aa16.68■□□□□ 0.26
VPS29-211ENST00000553128 OPTNQ96CV9 577 aa16.68■□□□□ 0.26
VPS29-211ENST00000553128 VEZTQ9HBM0 779 aa16.68■□□□□ 0.26
VPS29-211ENST00000553128 PPP2R3BQ9Y5P8 575 aa16.68■□□□□ 0.26
VPS29-211ENST00000553128 IRS2Q9Y4H2 1338 aa16.68■□□□□ 0.26
VPS29-211ENST00000553128 SPDYE2BA6NHP3 402 aa16.67■□□□□ 0.26
VPS29-211ENST00000553128 SPDYE6P0CI01 402 aa16.67■□□□□ 0.26
VPS29-211ENST00000553128 IREB2P48200 963 aaKnown RBP16.67■□□□□ 0.26
VPS29-211ENST00000553128 SUPT20HL1Q3ZLR7 823 aa16.67■□□□□ 0.26
VPS29-211ENST00000553128 ANKRD13AQ8IZ07 590 aa16.67■□□□□ 0.26
VPS29-211ENST00000553128 SH3TC2Q8TF17 1288 aa16.67■□□□□ 0.26
VPS29-211ENST00000553128 BRI3BPQ8WY22 251 aa16.67■□□□□ 0.26
VPS29-211ENST00000553128 ARHGAP39Q9C0H5 1083 aa16.67■□□□□ 0.26
VPS29-211ENST00000553128 JAG2Q9Y219 1238 aa16.67■□□□□ 0.26
VPS29-211ENST00000553128 OTOFQ9HC10 1997 aa16.67■□□□□ 0.26
VPS29-211ENST00000553128 ZSWIM8A7E2V4 1837 aa16.66■□□□□ 0.26
VPS29-211ENST00000553128 PI4KAP2A4QPH2 592 aa16.66■□□□□ 0.26
VPS29-211ENST00000553128 UNCXA6NJT0 531 aa16.66■□□□□ 0.26
VPS29-211ENST00000553128 ITGA6P23229 1130 aa16.66■□□□□ 0.26
VPS29-211ENST00000553128 IGHMBP2P38935 993 aaKnown RBP16.66■□□□□ 0.26
VPS29-211ENST00000553128 RASA3Q14644 834 aa16.66■□□□□ 0.26
VPS29-211ENST00000553128 PI4KAP1Q8N8J0 262 aa16.66■□□□□ 0.26
VPS29-211ENST00000553128 RBM27Q9P2N5 1060 aaKnown RBP16.66■□□□□ 0.26
VPS29-211ENST00000553128 MYH3P11055 1940 aa16.66■□□□□ 0.26
VPS29-211ENST00000553128 LAMA3Q16787 3333 aa16.65■□□□□ 0.26
VPS29-211ENST00000553128 DDX58O95786 925 aaKnown RBP16.65■□□□□ 0.26
VPS29-211ENST00000553128 CHRNDQ07001 517 aa16.65■□□□□ 0.26
VPS29-211ENST00000553128 UBE3BQ7Z3V4 1068 aa16.65■□□□□ 0.26
VPS29-211ENST00000553128 NBPF11Q86T75 865 aa16.65■□□□□ 0.26
VPS29-211ENST00000553128 FAM43AQ8N2R8 423 aa16.65■□□□□ 0.26
VPS29-211ENST00000553128 ANKRD2Q9GZV1 360 aa16.65■□□□□ 0.26
VPS29-211ENST00000553128 ADAMTS8Q9UP79 889 aa16.65■□□□□ 0.26
VPS29-211ENST00000553128 ECM29Q5VYK3 1845 aa16.65■□□□□ 0.26
VPS29-211ENST00000553128 NEURL1BA8MQ27 555 aa16.64■□□□□ 0.25
VPS29-211ENST00000553128 TAF5LO75529 589 aa16.64■□□□□ 0.25
VPS29-211ENST00000553128 TAF1CQ15572 869 aaPredicted RBP16.64■□□□□ 0.25
VPS29-211ENST00000553128 KSR2Q6VAB6 950 aa16.64■□□□□ 0.25
VPS29-211ENST00000553128 PPP1R3FQ6ZSY5 799 aaPredicted RBP16.64■□□□□ 0.25
VPS29-211ENST00000553128 HELBQ8NG08 1087 aaPredicted RBP16.64■□□□□ 0.25
VPS29-211ENST00000553128 SHISA4Q96DD7 197 aa16.64■□□□□ 0.25
VPS29-211ENST00000553128 CCL15-CCL14A0A0B4J2E2 113 aa16.63■□□□□ 0.25
VPS29-211ENST00000553128 H7C1W4 665 aa16.63■□□□□ 0.25
VPS29-211ENST00000553128 DLL1O00548 723 aa16.63■□□□□ 0.25
VPS29-211ENST00000553128 MYO1BO43795 1136 aa16.63■□□□□ 0.25
VPS29-211ENST00000553128 KCNJ4P48050 445 aa16.63■□□□□ 0.25
VPS29-211ENST00000553128 CCL15Q16663 113 aa16.63■□□□□ 0.25
VPS29-211ENST00000553128 TSPYL6Q8N831 410 aa16.63■□□□□ 0.25
VPS29-211ENST00000553128 ZFYVE28Q9HCC9 887 aa16.63■□□□□ 0.25
VPS29-211ENST00000553128 ECM2O94769 699 aaPredicted RBP16.62■□□□□ 0.25
VPS29-211ENST00000553128 RALBP1Q15311 655 aa16.62■□□□□ 0.25
VPS29-211ENST00000553128 MTFR1Q15390 333 aa16.62■□□□□ 0.25
VPS29-211ENST00000553128 TEPSINQ96N21 525 aa16.62■□□□□ 0.25
VPS29-211ENST00000553128 MPHOSPH8Q99549 860 aa16.62■□□□□ 0.25
VPS29-211ENST00000553128 IFT57Q9NWB7 429 aa16.62■□□□□ 0.25
VPS29-211ENST00000553128 IL1R1P14778 569 aa16.61■□□□□ 0.25
VPS29-211ENST00000553128 RBM5P52756 815 aaKnown RBP eCLIP16.61■□□□□ 0.25
VPS29-211ENST00000553128 CASP7P55210 303 aa16.61■□□□□ 0.25
VPS29-211ENST00000553128 VGLL4Q14135 290 aa16.61■□□□□ 0.25
VPS29-211ENST00000553128 CSF1RP07333 972 aa16.6■□□□□ 0.25
VPS29-211ENST00000553128 CCDC30Q5VVM6 783 aa16.6■□□□□ 0.25
VPS29-211ENST00000553128 G2E3Q7L622 706 aa16.6■□□□□ 0.25
VPS29-211ENST00000553128 SLC17A8Q8NDX2 589 aa16.6■□□□□ 0.25
VPS29-211ENST00000553128 DPF3Q92784 378 aa16.6■□□□□ 0.25
VPS29-211ENST00000553128 PLA2G12BQ9BX93 195 aa16.6■□□□□ 0.25
VPS29-211ENST00000553128 ZNF70Q9UC06 446 aaPredicted RBP16.6■□□□□ 0.25
VPS29-211ENST00000553128 CTGFP29279 349 aa16.59■□□□□ 0.25
VPS29-211ENST00000553128 GTF2A2P52657 109 aa16.59■□□□□ 0.25
VPS29-211ENST00000553128 GNAI1P63096 354 aa16.59■□□□□ 0.25
VPS29-211ENST00000553128 LACTBP83111 547 aaPredicted RBP16.59■□□□□ 0.25
VPS29-211ENST00000553128 NEXNQ0ZGT2 675 aa16.59■□□□□ 0.25
VPS29-211ENST00000553128 ARHGEF6Q15052 776 aa16.59■□□□□ 0.25
VPS29-211ENST00000553128 WDR43Q15061 677 aaKnown RBP eCLIP16.59■□□□□ 0.25
VPS29-211ENST00000553128 SPDYE2Q495Y8 402 aa16.59■□□□□ 0.25
VPS29-211ENST00000553128 C15orf52Q6ZUT6 534 aaKnown RBP16.59■□□□□ 0.25
VPS29-211ENST00000553128 TMEM39BQ9GZU3 492 aa16.59■□□□□ 0.25
VPS29-211ENST00000553128 PRO3102Q9H379 93 aa16.59■□□□□ 0.25
VPS29-211ENST00000553128 TDRD3Q9H7E2 651 aaKnown RBP16.59■□□□□ 0.25
VPS29-211ENST00000553128 TLR2O60603 784 aa16.58■□□□□ 0.24
VPS29-211ENST00000553128 FKBP1AP62942 108 aaKnown RBP16.58■□□□□ 0.24
VPS29-211ENST00000553128 GCKRQ14397 625 aa16.58■□□□□ 0.24
VPS29-211ENST00000553128 DDX55Q8NHQ9 600 aaKnown RBP eCLIP16.58■□□□□ 0.24
VPS29-211ENST00000553128 A0A1B0GUL6 1792 aa16.57■□□□□ 0.24
VPS29-211ENST00000553128 MYBBP1AQ9BQG0 1328 aaKnown RBP16.57■□□□□ 0.24
VPS29-211ENST00000553128 TCP10L2B9ZVM9 353 aa16.57■□□□□ 0.24
VPS29-211ENST00000553128 BTBD19C9JJ37 291 aa16.57■□□□□ 0.24
VPS29-211ENST00000553128 MAP3K9P80192 1104 aa16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms