RNA–Protein interactions for RNA: ENST00000550592.1

LIMA1-205, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 567 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-205ENST00000550592 GRIK5Q16478 980 aa7.83□□□□□ -1.16
LIMA1-205ENST00000550592 ZNF394Q53GI3 561 aa7.83□□□□□ -1.16
LIMA1-205ENST00000550592 NAALADL2Q58DX5 795 aa7.83□□□□□ -1.16
LIMA1-205ENST00000550592 TPTE2Q6XPS3 522 aa7.83□□□□□ -1.16
LIMA1-205ENST00000550592 VN1R5Q7Z5H4 357 aa7.83□□□□□ -1.16
LIMA1-205ENST00000550592 FBXO24O75426 580 aa7.82□□□□□ -1.16
LIMA1-205ENST00000550592 CDC27P30260 824 aa7.82□□□□□ -1.16
LIMA1-205ENST00000550592 KANK3Q6NY19 840 aa7.82□□□□□ -1.16
LIMA1-205ENST00000550592 EDARADDQ8WWZ3 215 aa7.82□□□□□ -1.16
LIMA1-205ENST00000550592 CCSER2Q9H7U1 834 aa7.82□□□□□ -1.16
LIMA1-205ENST00000550592 COPRSQ9NQ92 184 aa7.82□□□□□ -1.16
LIMA1-205ENST00000550592 ENC1O14682 589 aa7.81□□□□□ -1.16
LIMA1-205ENST00000550592 OIP5O43482 229 aa7.81□□□□□ -1.16
LIMA1-205ENST00000550592 B3GALT4O96024 378 aa7.81□□□□□ -1.16
LIMA1-205ENST00000550592 PCDH1Q08174 1060 aa7.81□□□□□ -1.16
LIMA1-205ENST00000550592 PWP1Q13610 501 aa7.81□□□□□ -1.16
LIMA1-205ENST00000550592 ZNF423Q2M1K9 1284 aa7.81□□□□□ -1.16
LIMA1-205ENST00000550592 RELL1Q8IUW5 271 aa7.81□□□□□ -1.16
LIMA1-205ENST00000550592 GALNT6Q8NCL4 622 aa7.81□□□□□ -1.16
LIMA1-205ENST00000550592 NUDT8Q8WV74 236 aa7.81□□□□□ -1.16
LIMA1-205ENST00000550592 BTBD6Q96KE9 485 aa7.81□□□□□ -1.16
LIMA1-205ENST00000550592 LACRTQ9GZZ8 138 aa7.81□□□□□ -1.16
LIMA1-205ENST00000550592 ACBD3Q9H3P7 528 aa7.81□□□□□ -1.16
LIMA1-205ENST00000550592 SH2B1Q9NRF2 756 aaPredicted RBP7.81□□□□□ -1.16
LIMA1-205ENST00000550592 TMEM39AQ9NV64 488 aa7.81□□□□□ -1.16
LIMA1-205ENST00000550592 KBTBD4Q9NVX7 518 aa7.81□□□□□ -1.16
LIMA1-205ENST00000550592 PCDHGB7Q9Y5F8 929 aa7.81□□□□□ -1.16
LIMA1-205ENST00000550592 ALBP02768 609 aa7.8□□□□□ -1.16
LIMA1-205ENST00000550592 CELA3AP09093 270 aa7.8□□□□□ -1.16
LIMA1-205ENST00000550592 ESRRAP11474 423 aaPredicted RBP7.8□□□□□ -1.16
LIMA1-205ENST00000550592 LCE2CQ5TA81 110 aa7.8□□□□□ -1.16
LIMA1-205ENST00000550592 GDF6Q6KF10 455 aaPredicted RBP7.8□□□□□ -1.16
LIMA1-205ENST00000550592 SLC43A3Q8NBI5 491 aa7.8□□□□□ -1.16
LIMA1-205ENST00000550592 TMEM74Q96NL1 305 aa7.8□□□□□ -1.16
LIMA1-205ENST00000550592 TRIM56Q9BRZ2 755 aaKnown RBP7.8□□□□□ -1.16
LIMA1-205ENST00000550592 BCRP11274 1271 aa7.79□□□□□ -1.16
LIMA1-205ENST00000550592 EPHA1P21709 976 aa7.79□□□□□ -1.16
LIMA1-205ENST00000550592 BAG6P46379 1132 aa7.79□□□□□ -1.16
LIMA1-205ENST00000550592 AFF1P51825 1210 aaKnown RBP7.79□□□□□ -1.16
LIMA1-205ENST00000550592 PPP2R3AQ06190 1150 aa7.79□□□□□ -1.16
LIMA1-205ENST00000550592 CHSY3Q70JA7 882 aa7.79□□□□□ -1.16
LIMA1-205ENST00000550592 TINF2Q9BSI4 451 aa7.79□□□□□ -1.16
LIMA1-205ENST00000550592 JPH1Q9HDC5 661 aaPredicted RBP7.79□□□□□ -1.16
LIMA1-205ENST00000550592 PRDM6Q9NQX0 595 aa7.79□□□□□ -1.16
LIMA1-205ENST00000550592 NISCHQ9Y2I1 1504 aa7.78□□□□□ -1.16
LIMA1-205ENST00000550592 FAM177BA6PVY3 158 aa7.78□□□□□ -1.16
LIMA1-205ENST00000550592 LILRB5O75023 590 aa7.78□□□□□ -1.16
LIMA1-205ENST00000550592 GMPRP36959 345 aa7.78□□□□□ -1.16
LIMA1-205ENST00000550592 LIG3P49916 1009 aa7.78□□□□□ -1.16
LIMA1-205ENST00000550592 CABP4P57796 275 aa7.78□□□□□ -1.16
LIMA1-205ENST00000550592 RPS26P62854 115 aaKnown RBP7.78□□□□□ -1.16
LIMA1-205ENST00000550592 IKBKEQ14164 716 aa7.78□□□□□ -1.16
LIMA1-205ENST00000550592 IL22RA1Q8N6P7 574 aa7.78□□□□□ -1.16
LIMA1-205ENST00000550592 PHC3Q8NDX5 983 aa7.78□□□□□ -1.16
LIMA1-205ENST00000550592 GPN3Q9UHW5 284 aaPredicted RBP7.78□□□□□ -1.16
LIMA1-205ENST00000550592 PPME1Q9Y570 386 aa7.78□□□□□ -1.16
LIMA1-205ENST00000550592 SHISA8B8ZZ34 492 aa7.77□□□□□ -1.17
LIMA1-205ENST00000550592 H3BRJ5 948 aa7.77□□□□□ -1.17
LIMA1-205ENST00000550592 M0R082 166 aa7.77□□□□□ -1.17
LIMA1-205ENST00000550592 SOX1O00570 391 aaPredicted RBP7.77□□□□□ -1.17
LIMA1-205ENST00000550592 PAGE1O75459 146 aa7.77□□□□□ -1.17
LIMA1-205ENST00000550592 GBP2P32456 591 aaPredicted RBP7.77□□□□□ -1.17
LIMA1-205ENST00000550592 TNNI2P48788 182 aa7.77□□□□□ -1.17
LIMA1-205ENST00000550592 ZNF157P51786 506 aaPredicted RBP7.77□□□□□ -1.17
LIMA1-205ENST00000550592 TTBK2Q6IQ55 1244 aa7.77□□□□□ -1.17
LIMA1-205ENST00000550592 AGMOQ6ZNB7 445 aa7.77□□□□□ -1.17
LIMA1-205ENST00000550592 ILDR2Q71H61 639 aa7.77□□□□□ -1.17
LIMA1-205ENST00000550592 ZNF417Q8TAU3 575 aa7.77□□□□□ -1.17
LIMA1-205ENST00000550592 RHOVQ96L33 236 aa7.77□□□□□ -1.17
LIMA1-205ENST00000550592 ZNF587Q96SQ5 575 aaPredicted RBP7.77□□□□□ -1.17
LIMA1-205ENST00000550592 SOX17Q9H6I2 414 aaPredicted RBP7.77□□□□□ -1.17
LIMA1-205ENST00000550592 CAPN10Q9HC96 672 aa7.77□□□□□ -1.17
LIMA1-205ENST00000550592 KCNQ5Q9NR82 932 aa7.77□□□□□ -1.17
LIMA1-205ENST00000550592 MINDY4BA8MYZ0 360 aa7.76□□□□□ -1.17
LIMA1-205ENST00000550592 IGSF3O75054 1194 aa7.76□□□□□ -1.17
LIMA1-205ENST00000550592 WFS1O76024 890 aa7.76□□□□□ -1.17
LIMA1-205ENST00000550592 CELA2BP08218 269 aaPredicted RBP7.76□□□□□ -1.17
LIMA1-205ENST00000550592 BMP6P22004 513 aa7.76□□□□□ -1.17
LIMA1-205ENST00000550592 NME2P22392 152 aa7.76□□□□□ -1.17
LIMA1-205ENST00000550592 EIF4A3P38919 411 aaKnown RBP7.76□□□□□ -1.17
LIMA1-205ENST00000550592 GNL2Q13823 731 aaKnown RBP7.76□□□□□ -1.17
LIMA1-205ENST00000550592 MAP3K11Q16584 847 aa7.76□□□□□ -1.17
LIMA1-205ENST00000550592 LYPD4Q6UWN0 246 aa7.76□□□□□ -1.17
LIMA1-205ENST00000550592 DDX54Q8TDD1 881 aaKnown RBP7.76□□□□□ -1.17
LIMA1-205ENST00000550592 SREK1Q8WXA9 508 aaKnown RBP7.76□□□□□ -1.17
LIMA1-205ENST00000550592 WNT8BQ93098 351 aa7.76□□□□□ -1.17
LIMA1-205ENST00000550592 ADAMTS1Q9UHI8 967 aa7.76□□□□□ -1.17
LIMA1-205ENST00000550592 INPP5FQ9Y2H2 1132 aa7.76□□□□□ -1.17
LIMA1-205ENST00000550592 SAMM50Q9Y512 469 aa7.76□□□□□ -1.17
LIMA1-205ENST00000550592 EIF4EBP3O60516 100 aaPredicted RBP7.75□□□□□ -1.17
LIMA1-205ENST00000550592 GJA8P48165 433 aa7.75□□□□□ -1.17
LIMA1-205ENST00000550592 COL9A3Q14050 684 aaPredicted RBP7.75□□□□□ -1.17
LIMA1-205ENST00000550592 PCNX4Q63HM2 1172 aa7.75□□□□□ -1.17
LIMA1-205ENST00000550592 MSL1Q68DK7 614 aa7.75□□□□□ -1.17
LIMA1-205ENST00000550592 C8orf86Q6ZUL3 223 aa7.75□□□□□ -1.17
LIMA1-205ENST00000550592 GMLQ99445 158 aa7.75□□□□□ -1.17
LIMA1-205ENST00000550592 SPON2Q9BUD6 331 aa7.75□□□□□ -1.17
LIMA1-205ENST00000550592 TLR6Q9Y2C9 796 aa7.75□□□□□ -1.17
LIMA1-205ENST00000550592 F6X3S4 739 aa7.74□□□□□ -1.17
LIMA1-205ENST00000550592 GREM1O60565 184 aa7.74□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms