RNA–Protein interactions for RNA: ENST00000546588.1

VPS29-203, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,059 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-203ENST00000546588 GZF1Q9H116 711 aaPredicted RBP10.64□□□□□ -0.71
VPS29-203ENST00000546588 TMOD3Q9NYL9 352 aa10.64□□□□□ -0.71
VPS29-203ENST00000546588 KAT6BQ8WYB5 2073 aa10.64□□□□□ -0.71
VPS29-203ENST00000546588 COL24A1Q17RW2 1714 aa10.64□□□□□ -0.71
VPS29-203ENST00000546588 QSER1Q2KHR3 1735 aa10.64□□□□□ -0.71
VPS29-203ENST00000546588 UBR3Q6ZT12 1888 aa10.64□□□□□ -0.71
VPS29-203ENST00000546588 WIPF1O43516 503 aa10.63□□□□□ -0.71
VPS29-203ENST00000546588 SLC39A6Q13433 755 aa10.63□□□□□ -0.71
VPS29-203ENST00000546588 PRR7Q8TB68 274 aa10.63□□□□□ -0.71
VPS29-203ENST00000546588 DDX54Q8TDD1 881 aaKnown RBP10.63□□□□□ -0.71
VPS29-203ENST00000546588 FBXO41Q8TF61 875 aa10.63□□□□□ -0.71
VPS29-203ENST00000546588 PPP1R12CQ9BZL4 782 aa10.63□□□□□ -0.71
VPS29-203ENST00000546588 HYPKQ9NX55 129 aa10.63□□□□□ -0.71
VPS29-203ENST00000546588 COL15A1P39059 1388 aa10.63□□□□□ -0.71
VPS29-203ENST00000546588 GPR37L1O60883 481 aa10.62□□□□□ -0.71
VPS29-203ENST00000546588 CCT4P50991 539 aaKnown RBP10.62□□□□□ -0.71
VPS29-203ENST00000546588 NR6A1Q15406 480 aa10.62□□□□□ -0.71
VPS29-203ENST00000546588 LCE2CQ5TA81 110 aa10.62□□□□□ -0.71
VPS29-203ENST00000546588 G2E3Q7L622 706 aa10.62□□□□□ -0.71
VPS29-203ENST00000546588 USB1Q9BQ65 265 aaKnown RBP10.62□□□□□ -0.71
VPS29-203ENST00000546588 TEX13AQ9BXU3 409 aaPredicted RBP10.62□□□□□ -0.71
VPS29-203ENST00000546588 ATP13A2Q9NQ11 1180 aa10.62□□□□□ -0.71
VPS29-203ENST00000546588 ATG3Q9NT62 314 aa10.62□□□□□ -0.71
VPS29-203ENST00000546588 CHPF2Q9P2E5 772 aa10.62□□□□□ -0.71
VPS29-203ENST00000546588 PRAMEF22A3QJZ6 481 aa10.61□□□□□ -0.71
VPS29-203ENST00000546588 J3QL48 77 aa10.61□□□□□ -0.71
VPS29-203ENST00000546588 HSP90B1P14625 803 aaKnown RBP10.61□□□□□ -0.71
VPS29-203ENST00000546588 LMOD1P29536 600 aaPredicted RBP10.61□□□□□ -0.71
VPS29-203ENST00000546588 HDAC1Q13547 482 aaPredicted RBP10.61□□□□□ -0.71
VPS29-203ENST00000546588 CCDC136Q96JN2 1154 aa10.61□□□□□ -0.71
VPS29-203ENST00000546588 UTYO14607 1347 aa10.6□□□□□ -0.71
VPS29-203ENST00000546588 TMCO4Q5TGY1 634 aa10.6□□□□□ -0.71
VPS29-203ENST00000546588 MEX3CQ5U5Q3 659 aaKnown RBP10.6□□□□□ -0.71
VPS29-203ENST00000546588 CENPQQ7L2Z9 268 aaPredicted RBP10.6□□□□□ -0.71
VPS29-203ENST00000546588 PALM3A6NDB9 673 aaPredicted RBP10.59□□□□□ -0.71
VPS29-203ENST00000546588 SEMA3FQ13275 785 aa10.59□□□□□ -0.71
VPS29-203ENST00000546588 ZNF772Q68DY9 489 aaPredicted RBP10.59□□□□□ -0.71
VPS29-203ENST00000546588 B4GALNT3Q6L9W6 998 aa10.59□□□□□ -0.71
VPS29-203ENST00000546588 ITPRIPQ8IWB1 547 aa10.59□□□□□ -0.71
VPS29-203ENST00000546588 SLC4A9Q96Q91 983 aa10.59□□□□□ -0.71
VPS29-203ENST00000546588 ASAP1Q9ULH1 1129 aa10.59□□□□□ -0.71
VPS29-203ENST00000546588 USP16Q9Y5T5 823 aa10.59□□□□□ -0.71
VPS29-203ENST00000546588 DDX60Q8IY21 1712 aaKnown RBP10.58□□□□□ -0.72
VPS29-203ENST00000546588 PALLDQ8WX93 1383 aa10.58□□□□□ -0.72
VPS29-203ENST00000546588 ALDH1L1O75891 902 aa10.58□□□□□ -0.72
VPS29-203ENST00000546588 SNRPBP14678 240 aaKnown RBP10.58□□□□□ -0.72
VPS29-203ENST00000546588 SKOR1P84550 965 aa10.58□□□□□ -0.72
VPS29-203ENST00000546588 FKBP5Q13451 457 aaPredicted RBP10.58□□□□□ -0.72
VPS29-203ENST00000546588 PROSER3Q2NL68 480 aa10.58□□□□□ -0.72
VPS29-203ENST00000546588 BEND3Q5T5X7 828 aa10.58□□□□□ -0.72
VPS29-203ENST00000546588 NBPF14Q5TI25 921 aa10.58□□□□□ -0.72
VPS29-203ENST00000546588 NBPF10Q6P3W6 841 aaKnown RBP10.58□□□□□ -0.72
VPS29-203ENST00000546588 KSR2Q6VAB6 950 aa10.58□□□□□ -0.72
VPS29-203ENST00000546588 NBPF15Q8N660 670 aa10.58□□□□□ -0.72
VPS29-203ENST00000546588 SMARCC1Q92922 1105 aaPredicted RBP10.58□□□□□ -0.72
VPS29-203ENST00000546588 TRIM47Q96LD4 638 aa10.58□□□□□ -0.72
VPS29-203ENST00000546588 ALG2Q9H553 416 aa10.58□□□□□ -0.72
VPS29-203ENST00000546588 PHAXQ9H814 394 aaKnown RBP10.58□□□□□ -0.72
VPS29-203ENST00000546588 TFIP11Q9UBB9 837 aaKnown RBP10.58□□□□□ -0.72
VPS29-203ENST00000546588 CARNS1A5YM72 827 aa10.57□□□□□ -0.72
VPS29-203ENST00000546588 PNMA1Q8ND90 353 aa10.57□□□□□ -0.72
VPS29-203ENST00000546588 DNAAF4Q8WXU2 420 aa10.57□□□□□ -0.72
VPS29-203ENST00000546588 HPS1Q92902 700 aa10.57□□□□□ -0.72
VPS29-203ENST00000546588 EP400Q96L91 3159 aa10.57□□□□□ -0.72
VPS29-203ENST00000546588 TCERG1O14776 1098 aaKnown RBP10.56□□□□□ -0.72
VPS29-203ENST00000546588 DDX58O95786 925 aaKnown RBP10.56□□□□□ -0.72
VPS29-203ENST00000546588 CYP19A1P11511 503 aaPredicted RBP10.56□□□□□ -0.72
VPS29-203ENST00000546588 EIF2S2P20042 333 aaKnown RBP10.56□□□□□ -0.72
VPS29-203ENST00000546588 WNT7BP56706 349 aa10.56□□□□□ -0.72
VPS29-203ENST00000546588 RBM6P78332 1123 aaKnown RBP10.56□□□□□ -0.72
VPS29-203ENST00000546588 SMC5Q8IY18 1101 aa10.56□□□□□ -0.72
VPS29-203ENST00000546588 LINS1Q8NG48 757 aa10.56□□□□□ -0.72
VPS29-203ENST00000546588 QTRT2Q9H974 415 aaKnown RBP10.56□□□□□ -0.72
VPS29-203ENST00000546588 LRP5O75197 1615 aa10.55□□□□□ -0.72
VPS29-203ENST00000546588 A0A1B0GUL6 1792 aa10.55□□□□□ -0.72
VPS29-203ENST00000546588 PI4KAP2A4QPH2 592 aa10.55□□□□□ -0.72
VPS29-203ENST00000546588 GNAI3P08754 354 aa10.55□□□□□ -0.72
VPS29-203ENST00000546588 MTX1Q13505 466 aa10.55□□□□□ -0.72
VPS29-203ENST00000546588 RC3H1Q5TC82 1133 aaKnown RBP10.55□□□□□ -0.72
VPS29-203ENST00000546588 RETREG3Q86VR2 466 aa10.55□□□□□ -0.72
VPS29-203ENST00000546588 RPAP2Q8IXW5 612 aaPredicted RBP10.55□□□□□ -0.72
VPS29-203ENST00000546588 PI4KAP1Q8N8J0 262 aa10.55□□□□□ -0.72
VPS29-203ENST00000546588 SENP2Q9HC62 589 aa10.55□□□□□ -0.72
VPS29-203ENST00000546588 CNTNAP4Q9C0A0 1308 aa10.55□□□□□ -0.72
VPS29-203ENST00000546588 LOC102724428A0A0B4J2F2 783 aa10.54□□□□□ -0.72
VPS29-203ENST00000546588 F6X3S4 739 aa10.54□□□□□ -0.72
VPS29-203ENST00000546588 TERTO14746 1132 aaKnown RBP10.54□□□□□ -0.72
VPS29-203ENST00000546588 IGHDP01880 384 aa10.54□□□□□ -0.72
VPS29-203ENST00000546588 SOX11P35716 441 aa10.54□□□□□ -0.72
VPS29-203ENST00000546588 IL6STP40189 918 aaPredicted RBP10.54□□□□□ -0.72
VPS29-203ENST00000546588 SIK1P57059 783 aa10.54□□□□□ -0.72
VPS29-203ENST00000546588 SIRT2Q8IXJ6 389 aa10.54□□□□□ -0.72
VPS29-203ENST00000546588 SEPT12Q8IYM1 358 aa10.54□□□□□ -0.72
VPS29-203ENST00000546588 ANKRD44Q8N8A2 993 aa10.54□□□□□ -0.72
VPS29-203ENST00000546588 PLBD2Q8NHP8 589 aa10.54□□□□□ -0.72
VPS29-203ENST00000546588 UCN2Q96RP3 112 aa10.54□□□□□ -0.72
VPS29-203ENST00000546588 METTL22Q9BUU2 404 aaPredicted RBP10.54□□□□□ -0.72
VPS29-203ENST00000546588 SRCIN1Q9C0H9 1055 aa10.54□□□□□ -0.72
VPS29-203ENST00000546588 USP44Q9H0E7 712 aa10.54□□□□□ -0.72
VPS29-203ENST00000546588 STK17AQ9UEE5 414 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms