RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 EN2P19622 333 aaPredicted RBP16.42■□□□□ 0.22
SCAF11-208ENST00000546534 C8orf58Q8NAV2 365 aa16.42■□□□□ 0.22
SCAF11-208ENST00000546534 CD99L2Q8TCZ2 262 aa16.42■□□□□ 0.22
SCAF11-208ENST00000546534 ERO1AQ96HE7 468 aa16.42■□□□□ 0.22
SCAF11-208ENST00000546534 SSC5DA1L4H1 1573 aa16.42■□□□□ 0.22
SCAF11-208ENST00000546534 ZNF804BA4D1E1 1349 aa16.42■□□□□ 0.22
SCAF11-208ENST00000546534 MYBBP1AQ9BQG0 1328 aaKnown RBP16.42■□□□□ 0.22
SCAF11-208ENST00000546534 PPP1R12BO60237 982 aaPredicted RBP16.41■□□□□ 0.22
SCAF11-208ENST00000546534 CRHR2Q13324 411 aa16.41■□□□□ 0.22
SCAF11-208ENST00000546534 DLGAP5Q15398 846 aa16.41■□□□□ 0.22
SCAF11-208ENST00000546534 IFT57Q9NWB7 429 aa16.41■□□□□ 0.22
SCAF11-208ENST00000546534 COL1A1P02452 1464 aaPredicted RBP16.41■□□□□ 0.22
SCAF11-208ENST00000546534 PI4KAP2A4QPH2 592 aa16.4■□□□□ 0.22
SCAF11-208ENST00000546534 IGHMBP2P38935 993 aaKnown RBP16.4■□□□□ 0.22
SCAF11-208ENST00000546534 FXR1P51114 621 aaKnown RBP eCLIP16.4■□□□□ 0.22
SCAF11-208ENST00000546534 GNAI1P63096 354 aa16.4■□□□□ 0.22
SCAF11-208ENST00000546534 CAP1Q01518 475 aa16.4■□□□□ 0.22
SCAF11-208ENST00000546534 CWF19L2Q2TBE0 894 aaKnown RBP16.4■□□□□ 0.22
SCAF11-208ENST00000546534 CCDC30Q5VVM6 783 aa16.4■□□□□ 0.22
SCAF11-208ENST00000546534 KSR2Q6VAB6 950 aa16.4■□□□□ 0.22
SCAF11-208ENST00000546534 CERS5Q8N5B7 392 aa16.4■□□□□ 0.22
SCAF11-208ENST00000546534 PI4KAP1Q8N8J0 262 aa16.4■□□□□ 0.22
SCAF11-208ENST00000546534 ARMC5Q96C12 935 aa16.4■□□□□ 0.22
SCAF11-208ENST00000546534 EFCC1Q9HA90 598 aa16.4■□□□□ 0.22
SCAF11-208ENST00000546534 PCDHAC2Q9Y5I4 1007 aa16.4■□□□□ 0.22
SCAF11-208ENST00000546534 SPEF2Q9C093 1822 aa16.4■□□□□ 0.22
SCAF11-208ENST00000546534 GJA5P36382 358 aa16.39■□□□□ 0.21
SCAF11-208ENST00000546534 MTMR14Q8NCE2 650 aa16.39■□□□□ 0.21
SCAF11-208ENST00000546534 ANKRD2Q9GZV1 360 aa16.39■□□□□ 0.21
SCAF11-208ENST00000546534 CD209Q9NNX6 404 aa16.39■□□□□ 0.21
SCAF11-208ENST00000546534 PPP2R3BQ9Y5P8 575 aa16.39■□□□□ 0.21
SCAF11-208ENST00000546534 CLRN2A0PK11 232 aa16.38■□□□□ 0.21
SCAF11-208ENST00000546534 UNCXA6NJT0 531 aa16.38■□□□□ 0.21
SCAF11-208ENST00000546534 H7C1W4 665 aa16.38■□□□□ 0.21
SCAF11-208ENST00000546534 ITGA6P23229 1130 aa16.38■□□□□ 0.21
SCAF11-208ENST00000546534 SP3Q02447 781 aa16.38■□□□□ 0.21
SCAF11-208ENST00000546534 NBPF12Q5TAG4 269 aaPredicted RBP16.38■□□□□ 0.21
SCAF11-208ENST00000546534 OTUD7BQ6GQQ9 843 aa16.38■□□□□ 0.21
SCAF11-208ENST00000546534 UBE3BQ7Z3V4 1068 aa16.38■□□□□ 0.21
SCAF11-208ENST00000546534 PTPN18Q99952 460 aa16.38■□□□□ 0.21
SCAF11-208ENST00000546534 HTTP42858 3142 aa16.37■□□□□ 0.21
SCAF11-208ENST00000546534 NEURL1BA8MQ27 555 aa16.37■□□□□ 0.21
SCAF11-208ENST00000546534 USP2O75604 605 aaPredicted RBP16.37■□□□□ 0.21
SCAF11-208ENST00000546534 NEXNQ0ZGT2 675 aa16.37■□□□□ 0.21
SCAF11-208ENST00000546534 SUPT20HL1Q3ZLR7 823 aa16.37■□□□□ 0.21
SCAF11-208ENST00000546534 TSPYL6Q8N831 410 aa16.37■□□□□ 0.21
SCAF11-208ENST00000546534 MPHOSPH8Q99549 860 aa16.37■□□□□ 0.21
SCAF11-208ENST00000546534 KIAA0100Q14667 2235 aaKnown RBP16.37■□□□□ 0.21
SCAF11-208ENST00000546534 RBBP6Q7Z6E9 1792 aaKnown RBP16.36■□□□□ 0.21
SCAF11-208ENST00000546534 F8W031 263 aaPredicted RBP16.36■□□□□ 0.21
SCAF11-208ENST00000546534 SNAP23O00161 211 aa16.36■□□□□ 0.21
SCAF11-208ENST00000546534 APAF1O14727 1248 aa16.36■□□□□ 0.21
SCAF11-208ENST00000546534 KCNJ4P48050 445 aa16.36■□□□□ 0.21
SCAF11-208ENST00000546534 IREB2P48200 963 aaKnown RBP16.36■□□□□ 0.21
SCAF11-208ENST00000546534 FXR2P51116 673 aaKnown RBP eCLIP16.36■□□□□ 0.21
SCAF11-208ENST00000546534 CALD1Q05682 793 aaKnown RBP16.36■□□□□ 0.21
SCAF11-208ENST00000546534 CHRNDQ07001 517 aa16.36■□□□□ 0.21
SCAF11-208ENST00000546534 CFAP100Q494V2 611 aa16.36■□□□□ 0.21
SCAF11-208ENST00000546534 PRMT6Q96LA8 375 aaPredicted RBP16.36■□□□□ 0.21
SCAF11-208ENST00000546534 TMEM106CQ9BVX2 250 aa16.36■□□□□ 0.21
SCAF11-208ENST00000546534 CHMP4AQ9BY43 222 aa16.36■□□□□ 0.21
SCAF11-208ENST00000546534 AOX1Q06278 1338 aa16.36■□□□□ 0.21
SCAF11-208ENST00000546534 MKI67P46013 3256 aaKnown RBP16.35■□□□□ 0.21
SCAF11-208ENST00000546534 TESPA1A2RU30 521 aaPredicted RBP16.35■□□□□ 0.21
SCAF11-208ENST00000546534 MYO1BO43795 1136 aa16.35■□□□□ 0.21
SCAF11-208ENST00000546534 ANKRD13AQ8IZ07 590 aa16.35■□□□□ 0.21
SCAF11-208ENST00000546534 ZNF333Q96JL9 665 aa16.35■□□□□ 0.21
SCAF11-208ENST00000546534 PLA2G12BQ9BX93 195 aa16.35■□□□□ 0.21
SCAF11-208ENST00000546534 VEZTQ9HBM0 779 aa16.35■□□□□ 0.21
SCAF11-208ENST00000546534 COLQQ9Y215 455 aaPredicted RBP16.35■□□□□ 0.21
SCAF11-208ENST00000546534 IRS2Q9Y4H2 1338 aa16.35■□□□□ 0.21
SCAF11-208ENST00000546534 MYH3P11055 1940 aa16.35■□□□□ 0.21
SCAF11-208ENST00000546534 LAMB1P07942 1786 aa16.34■□□□□ 0.21
SCAF11-208ENST00000546534 CSF1RP07333 972 aa16.34■□□□□ 0.21
SCAF11-208ENST00000546534 RASA3Q14644 834 aa16.34■□□□□ 0.21
SCAF11-208ENST00000546534 TAF5LO75529 589 aa16.33■□□□□ 0.2
SCAF11-208ENST00000546534 GCKRQ14397 625 aa16.33■□□□□ 0.2
SCAF11-208ENST00000546534 C15orf52Q6ZUT6 534 aaKnown RBP16.33■□□□□ 0.2
SCAF11-208ENST00000546534 G2E3Q7L622 706 aa16.33■□□□□ 0.2
SCAF11-208ENST00000546534 HELBQ8NG08 1087 aaPredicted RBP16.33■□□□□ 0.2
SCAF11-208ENST00000546534 OPTNQ96CV9 577 aa16.33■□□□□ 0.2
SCAF11-208ENST00000546534 MS4A4AQ96JQ5 239 aa16.33■□□□□ 0.2
SCAF11-208ENST00000546534 ZBTB47Q9UFB7 747 aaPredicted RBP16.33■□□□□ 0.2
SCAF11-208ENST00000546534 IL1R1P14778 569 aa16.32■□□□□ 0.2
SCAF11-208ENST00000546534 CASP7P55210 303 aa16.32■□□□□ 0.2
SCAF11-208ENST00000546534 STK31Q9BXU1 1019 aa16.32■□□□□ 0.2
SCAF11-208ENST00000546534 ELP3Q9H9T3 547 aa16.32■□□□□ 0.2
SCAF11-208ENST00000546534 PTCH2Q9Y6C5 1203 aa16.32■□□□□ 0.2
SCAF11-208ENST00000546534 RBM5P52756 815 aaKnown RBP eCLIP16.31■□□□□ 0.2
SCAF11-208ENST00000546534 SLC4A8Q2Y0W8 1093 aa16.31■□□□□ 0.2
SCAF11-208ENST00000546534 SLC9C1Q4G0N8 1177 aa16.31■□□□□ 0.2
SCAF11-208ENST00000546534 BRI3BPQ8WY22 251 aa16.31■□□□□ 0.2
SCAF11-208ENST00000546534 JAG2Q9Y219 1238 aa16.31■□□□□ 0.2
SCAF11-208ENST00000546534 ANKRD18BA2A2Z9 1011 aa16.3■□□□□ 0.2
SCAF11-208ENST00000546534 FKBP1AP62942 108 aaKnown RBP16.3■□□□□ 0.2
SCAF11-208ENST00000546534 DDX10Q13206 875 aaKnown RBP16.3■□□□□ 0.2
SCAF11-208ENST00000546534 ARHGEF6Q15052 776 aa16.3■□□□□ 0.2
SCAF11-208ENST00000546534 TAF1CQ15572 869 aaPredicted RBP16.3■□□□□ 0.2
SCAF11-208ENST00000546534 ZNF804AQ7Z570 1209 aa16.3■□□□□ 0.2
SCAF11-208ENST00000546534 NBPF11Q86T75 865 aa16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms