RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 CCDC194A0A1B0GVG4 234 aa18.06■□□□□ 0.48
CUX1-211ENST00000546411 hCG_1642624A0A1W2PR95 340 aa18.06■□□□□ 0.48
CUX1-211ENST00000546411 NR1I2O75469 434 aa18.06■□□□□ 0.48
CUX1-211ENST00000546411 POLA2Q14181 598 aa18.06■□□□□ 0.48
CUX1-211ENST00000546411 IFIT1BQ5T764 474 aaKnown RBP18.06■□□□□ 0.48
CUX1-211ENST00000546411 ESR2Q92731 530 aa18.06■□□□□ 0.48
CUX1-211ENST00000546411 COPRSQ9NQ92 184 aa18.06■□□□□ 0.48
CUX1-211ENST00000546411 RGS12O14924 1447 aa18.06■□□□□ 0.48
CUX1-211ENST00000546411 CPS1P31327 1500 aa18.06■□□□□ 0.48
CUX1-211ENST00000546411 EIF5P55010 431 aaKnown RBP18.06■□□□□ 0.48
CUX1-211ENST00000546411 TCIRG1Q13488 830 aa18.06■□□□□ 0.48
CUX1-211ENST00000546411 PDCL3Q9H2J4 239 aa18.06■□□□□ 0.48
CUX1-211ENST00000546411 IFNKQ9P0W0 207 aa18.06■□□□□ 0.48
CUX1-211ENST00000546411 NEXMIFQ5QGS0 1516 aa18.06■□□□□ 0.48
CUX1-211ENST00000546411 EPB41L2O43491 1005 aaKnown RBP18.06■□□□□ 0.48
CUX1-211ENST00000546411 HSPD1P10809 573 aaKnown RBP18.06■□□□□ 0.48
CUX1-211ENST00000546411 HS1BP3Q53T59 392 aa18.06■□□□□ 0.48
CUX1-211ENST00000546411 TEX35Q5T0J7 233 aa18.06■□□□□ 0.48
CUX1-211ENST00000546411 GTF3C6Q969F1 213 aa18.06■□□□□ 0.48
CUX1-211ENST00000546411 IQGAP1P46940 1657 aa18.05■□□□□ 0.48
CUX1-211ENST00000546411 C8orf37Q96NL8 207 aa18.05■□□□□ 0.48
CUX1-211ENST00000546411 CTDSPL2Q05D32 466 aa18.05■□□□□ 0.48
CUX1-211ENST00000546411 PPP4R3BQ5MIZ7 849 aa18.05■□□□□ 0.48
CUX1-211ENST00000546411 KRT23Q9C075 422 aa18.05■□□□□ 0.48
CUX1-211ENST00000546411 STX17P56962 302 aa18.05■□□□□ 0.48
CUX1-211ENST00000546411 CEP135Q66GS9 1140 aa18.05■□□□□ 0.48
CUX1-211ENST00000546411 ZNHIT6Q9NWK9 470 aaKnown RBP18.05■□□□□ 0.48
CUX1-211ENST00000546411 CTDP1Q9Y5B0 961 aaPredicted RBP18.05■□□□□ 0.48
CUX1-211ENST00000546411 SSH2Q76I76 1423 aa18.04■□□□□ 0.48
CUX1-211ENST00000546411 SH3TC1Q8TE82 1336 aa18.04■□□□□ 0.48
CUX1-211ENST00000546411 PTPN12Q05209 780 aaKnown RBP18.04■□□□□ 0.48
CUX1-211ENST00000546411 CAVIN2O95810 425 aa18.04■□□□□ 0.48
CUX1-211ENST00000546411 DHX58Q96C10 678 aa18.04■□□□□ 0.48
CUX1-211ENST00000546411 CCDC43Q96MW1 224 aaKnown RBP18.04■□□□□ 0.48
CUX1-211ENST00000546411 USP28Q96RU2 1077 aa18.04■□□□□ 0.48
CUX1-211ENST00000546411 FTOQ9C0B1 505 aaKnown RBP eCLIP18.04■□□□□ 0.48
CUX1-211ENST00000546411 ADGRB1O14514 1584 aa18.04■□□□□ 0.48
CUX1-211ENST00000546411 CYP27B1O15528 508 aa18.04■□□□□ 0.48
CUX1-211ENST00000546411 SNW1Q13573 536 aaKnown RBP18.04■□□□□ 0.48
CUX1-211ENST00000546411 HSP90B2PQ58FF3 399 aa18.04■□□□□ 0.48
CUX1-211ENST00000546411 CMTR1Q8N1G2 835 aaKnown RBP18.04■□□□□ 0.48
CUX1-211ENST00000546411 NLRP3Q96P20 1036 aa18.04■□□□□ 0.48
CUX1-211ENST00000546411 ZNF532Q9HCE3 1301 aa18.04■□□□□ 0.48
CUX1-211ENST00000546411 IQSEC2Q5JU85 1478 aa18.04■□□□□ 0.48
CUX1-211ENST00000546411 ADD1P35611 737 aaKnown RBP18.03■□□□□ 0.48
CUX1-211ENST00000546411 CEP89Q96ST8 783 aa18.03■□□□□ 0.48
CUX1-211ENST00000546411 SETDB2Q96T68 719 aa18.03■□□□□ 0.48
CUX1-211ENST00000546411 HAUS7Q99871 368 aa18.03■□□□□ 0.48
CUX1-211ENST00000546411 DEF6Q9H4E7 631 aa18.03■□□□□ 0.48
CUX1-211ENST00000546411 FAM160A1Q05DH4 1040 aa18.03■□□□□ 0.48
CUX1-211ENST00000546411 ANGEL1Q9UNK9 670 aaKnown RBP18.03■□□□□ 0.48
CUX1-211ENST00000546411 ZDHHC9Q9Y397 364 aa18.03■□□□□ 0.48
CUX1-211ENST00000546411 F8W031 263 aaPredicted RBP18.03■□□□□ 0.48
CUX1-211ENST00000546411 DYNC1I1O14576 645 aa18.03■□□□□ 0.48
CUX1-211ENST00000546411 FGAP02671 866 aa18.03■□□□□ 0.48
CUX1-211ENST00000546411 RPGRQ92834 1020 aaKnown RBP18.03■□□□□ 0.48
CUX1-211ENST00000546411 MAGEB6P1A0A0J9YX57 407 aa18.02■□□□□ 0.48
CUX1-211ENST00000546411 GSDMDP57764 484 aa18.02■□□□□ 0.48
CUX1-211ENST00000546411 KAT14Q9H8E8 782 aa18.02■□□□□ 0.48
CUX1-211ENST00000546411 CNNM2Q9H8M5 875 aa18.02■□□□□ 0.48
CUX1-211ENST00000546411 RFC4P35249 363 aa18.02■□□□□ 0.47
CUX1-211ENST00000546411 ENOX2Q16206 610 aaKnown RBP18.02■□□□□ 0.47
CUX1-211ENST00000546411 IL25Q9H293 177 aa18.02■□□□□ 0.47
CUX1-211ENST00000546411 CLSTN2Q9H4D0 955 aa18.02■□□□□ 0.47
CUX1-211ENST00000546411 PPP1R1BQ9UD71 204 aaPredicted RBP18.02■□□□□ 0.47
CUX1-211ENST00000546411 DIP2CQ9Y2E4 1556 aa18.01■□□□□ 0.47
CUX1-211ENST00000546411 PDE4BQ07343 736 aa18.01■□□□□ 0.47
CUX1-211ENST00000546411 SEC63Q9UGP8 760 aaKnown RBP18.01■□□□□ 0.47
CUX1-211ENST00000546411 MED14O60244 1454 aa18.01■□□□□ 0.47
CUX1-211ENST00000546411 PRIMPOLQ96LW4 560 aa18.01■□□□□ 0.47
CUX1-211ENST00000546411 GREM2Q9H772 168 aa18.01■□□□□ 0.47
CUX1-211ENST00000546411 CHGBP05060 677 aa18.01■□□□□ 0.47
CUX1-211ENST00000546411 UBA7P41226 1012 aa18.01■□□□□ 0.47
CUX1-211ENST00000546411 SCRN1Q12765 414 aa18.01■□□□□ 0.47
CUX1-211ENST00000546411 NOM1Q5C9Z4 860 aaKnown RBP18.01■□□□□ 0.47
CUX1-211ENST00000546411 MYO3AQ8NEV4 1616 aa18.01■□□□□ 0.47
CUX1-211ENST00000546411 PPP1R9BQ96SB3 815 aa18.01■□□□□ 0.47
CUX1-211ENST00000546411 CABP5Q9NP86 173 aa18.01■□□□□ 0.47
CUX1-211ENST00000546411 PDE8AO60658 829 aa18■□□□□ 0.47
CUX1-211ENST00000546411 IDEP14735 1019 aa18■□□□□ 0.47
CUX1-211ENST00000546411 CRNKL1Q9BZJ0 848 aaKnown RBP18■□□□□ 0.47
CUX1-211ENST00000546411 DNAI1Q9UI46 699 aa18■□□□□ 0.47
CUX1-211ENST00000546411 CAMSAP1Q5T5Y3 1602 aa18■□□□□ 0.47
CUX1-211ENST00000546411 GPHNQ9NQX3 736 aaPredicted RBP18■□□□□ 0.47
CUX1-211ENST00000546411 MCM9Q9NXL9 1143 aa18■□□□□ 0.47
CUX1-211ENST00000546411 KCNJ14Q9UNX9 436 aa18■□□□□ 0.47
CUX1-211ENST00000546411 LRMPQ12912 555 aa18■□□□□ 0.47
CUX1-211ENST00000546411 PUM3Q15397 648 aaKnown RBP18■□□□□ 0.47
CUX1-211ENST00000546411 KIF4BQ2VIQ3 1234 aa18■□□□□ 0.47
CUX1-211ENST00000546411 NUP88Q99567 741 aaPredicted RBP18■□□□□ 0.47
CUX1-211ENST00000546411 GNG11P61952 73 aa17.99■□□□□ 0.47
CUX1-211ENST00000546411 ERICH4A6NGS2 130 aa17.99■□□□□ 0.47
CUX1-211ENST00000546411 NEMFO60524 1076 aa17.99■□□□□ 0.47
CUX1-211ENST00000546411 NECTIN1Q15223 517 aa17.99■□□□□ 0.47
CUX1-211ENST00000546411 ANO1Q5XXA6 986 aa17.99■□□□□ 0.47
CUX1-211ENST00000546411 PLIN2Q99541 437 aa17.99■□□□□ 0.47
CUX1-211ENST00000546411 KCNQ4P56696 695 aa17.99■□□□□ 0.47
CUX1-211ENST00000546411 SYNE4Q8N205 404 aa17.99■□□□□ 0.47
CUX1-211ENST00000546411 CRB1P82279 1406 aa17.99■□□□□ 0.47
CUX1-211ENST00000546411 ERVV-2B6SEH9 535 aa17.99■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms