RNA–Protein interactions for RNA: ENST00000544750.1

USP28-212, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 542 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-212ENST00000544750 ITGA6P23229 1130 aa16.49■□□□□ 0.23
USP28-212ENST00000544750 UBE3BQ7Z3V4 1068 aa16.49■□□□□ 0.23
USP28-212ENST00000544750 PTPN22Q9Y2R2 807 aa16.49■□□□□ 0.23
USP28-212ENST00000544750 GJA5P36382 358 aa16.48■□□□□ 0.23
USP28-212ENST00000544750 CAP1Q01518 475 aa16.48■□□□□ 0.23
USP28-212ENST00000544750 NEXNQ0ZGT2 675 aa16.48■□□□□ 0.23
USP28-212ENST00000544750 DDX10Q13206 875 aaKnown RBP16.48■□□□□ 0.23
USP28-212ENST00000544750 C15orf52Q6ZUT6 534 aaKnown RBP16.48■□□□□ 0.23
USP28-212ENST00000544750 G2E3Q7L622 706 aa16.48■□□□□ 0.23
USP28-212ENST00000544750 PPP2R3BQ9Y5P8 575 aa16.48■□□□□ 0.23
USP28-212ENST00000544750 AOX1Q06278 1338 aa16.47■□□□□ 0.23
USP28-212ENST00000544750 TESPA1A2RU30 521 aaPredicted RBP16.47■□□□□ 0.23
USP28-212ENST00000544750 SNAP23O00161 211 aa16.47■□□□□ 0.23
USP28-212ENST00000544750 CHRNDQ07001 517 aa16.47■□□□□ 0.23
USP28-212ENST00000544750 GCKRQ14397 625 aa16.47■□□□□ 0.23
USP28-212ENST00000544750 DLGAP5Q15398 846 aa16.47■□□□□ 0.23
USP28-212ENST00000544750 ARMC5Q96C12 935 aa16.47■□□□□ 0.23
USP28-212ENST00000544750 ARAP2Q8WZ64 1704 aa16.47■□□□□ 0.23
USP28-212ENST00000544750 PPP1R12BO60237 982 aaPredicted RBP16.46■□□□□ 0.23
USP28-212ENST00000544750 USP2O75604 605 aaPredicted RBP16.46■□□□□ 0.23
USP28-212ENST00000544750 CRHR2Q13324 411 aa16.46■□□□□ 0.23
USP28-212ENST00000544750 CD99L2Q8TCZ2 262 aa16.46■□□□□ 0.23
USP28-212ENST00000544750 ERO1AQ96HE7 468 aa16.46■□□□□ 0.23
USP28-212ENST00000544750 PRMT6Q96LA8 375 aaPredicted RBP16.46■□□□□ 0.23
USP28-212ENST00000544750 MPHOSPH8Q99549 860 aa16.46■□□□□ 0.23
USP28-212ENST00000544750 PTPN18Q99952 460 aa16.46■□□□□ 0.23
USP28-212ENST00000544750 SPDYE2BA6NHP3 402 aa16.45■□□□□ 0.22
USP28-212ENST00000544750 SPDYE6P0CI01 402 aa16.45■□□□□ 0.22
USP28-212ENST00000544750 IL1R1P14778 569 aa16.45■□□□□ 0.22
USP28-212ENST00000544750 FKBP1AP62942 108 aaKnown RBP16.45■□□□□ 0.22
USP28-212ENST00000544750 NBPF12Q5TAG4 269 aaPredicted RBP16.45■□□□□ 0.22
USP28-212ENST00000544750 SUPT20HL1Q3ZLR7 823 aa16.44■□□□□ 0.22
USP28-212ENST00000544750 CFAP100Q494V2 611 aa16.44■□□□□ 0.22
USP28-212ENST00000544750 PRKRIP1Q9H875 184 aaPredicted RBP16.44■□□□□ 0.22
USP28-212ENST00000544750 ZSWIM8A7E2V4 1837 aa16.43■□□□□ 0.22
USP28-212ENST00000544750 CLRN2A0PK11 232 aa16.43■□□□□ 0.22
USP28-212ENST00000544750 TAF5LO75529 589 aa16.43■□□□□ 0.22
USP28-212ENST00000544750 EN2P19622 333 aaPredicted RBP16.43■□□□□ 0.22
USP28-212ENST00000544750 TSR2Q969E8 191 aaKnown RBP16.43■□□□□ 0.22
USP28-212ENST00000544750 STK31Q9BXU1 1019 aa16.43■□□□□ 0.22
USP28-212ENST00000544750 EFCC1Q9HA90 598 aa16.43■□□□□ 0.22
USP28-212ENST00000544750 CEP290O15078 2479 aa16.43■□□□□ 0.22
USP28-212ENST00000544750 KCNJ4P48050 445 aa16.42■□□□□ 0.22
USP28-212ENST00000544750 IREB2P48200 963 aaKnown RBP16.42■□□□□ 0.22
USP28-212ENST00000544750 FXR1P51114 621 aaKnown RBP eCLIP16.42■□□□□ 0.22
USP28-212ENST00000544750 SP3Q02447 781 aa16.42■□□□□ 0.22
USP28-212ENST00000544750 ANKRD13AQ8IZ07 590 aa16.42■□□□□ 0.22
USP28-212ENST00000544750 MS4A4AQ96JQ5 239 aa16.42■□□□□ 0.22
USP28-212ENST00000544750 F8W031 263 aaPredicted RBP16.41■□□□□ 0.22
USP28-212ENST00000544750 SLC4A2P04920 1241 aa16.41■□□□□ 0.22
USP28-212ENST00000544750 RASA3Q14644 834 aa16.41■□□□□ 0.22
USP28-212ENST00000544750 OTUD7BQ6GQQ9 843 aa16.41■□□□□ 0.22
USP28-212ENST00000544750 HELBQ8NG08 1087 aaPredicted RBP16.41■□□□□ 0.22
USP28-212ENST00000544750 ZNF333Q96JL9 665 aa16.41■□□□□ 0.22
USP28-212ENST00000544750 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.41■□□□□ 0.22
USP28-212ENST00000544750 ANKRD18BA2A2Z9 1011 aa16.4■□□□□ 0.22
USP28-212ENST00000544750 MYO1BO43795 1136 aa16.4■□□□□ 0.22
USP28-212ENST00000544750 FOXO4P98177 505 aa16.4■□□□□ 0.22
USP28-212ENST00000544750 FLIIQ13045 1269 aa16.4■□□□□ 0.22
USP28-212ENST00000544750 TWISTNBQ3B726 338 aaPredicted RBP16.4■□□□□ 0.22
USP28-212ENST00000544750 LINS1Q8NG48 757 aa16.4■□□□□ 0.22
USP28-212ENST00000544750 DNAAF4Q8WXU2 420 aa16.4■□□□□ 0.22
USP28-212ENST00000544750 MYH16Q9H6N6 1097 aa16.4■□□□□ 0.22
USP28-212ENST00000544750 VEZTQ9HBM0 779 aa16.4■□□□□ 0.22
USP28-212ENST00000544750 SPDYE2Q495Y8 402 aa16.39■□□□□ 0.21
USP28-212ENST00000544750 PPP1R3FQ6ZSY5 799 aaPredicted RBP16.39■□□□□ 0.21
USP28-212ENST00000544750 ZNF804AQ7Z570 1209 aa16.39■□□□□ 0.21
USP28-212ENST00000544750 OPTNQ96CV9 577 aa16.39■□□□□ 0.21
USP28-212ENST00000544750 TEPSINQ96N21 525 aa16.39■□□□□ 0.21
USP28-212ENST00000544750 FAM205AQ6ZU69 1335 aa16.39■□□□□ 0.21
USP28-212ENST00000544750 TRIOBPQ9H2D6 2365 aa16.38■□□□□ 0.21
USP28-212ENST00000544750 CCDC27Q2M243 656 aa16.38■□□□□ 0.21
USP28-212ENST00000544750 CDAN1Q8IWY9 1227 aa16.38■□□□□ 0.21
USP28-212ENST00000544750 BRI3BPQ8WY22 251 aa16.38■□□□□ 0.21
USP28-212ENST00000544750 ELP3Q9H9T3 547 aa16.38■□□□□ 0.21
USP28-212ENST00000544750 JAG2Q9Y219 1238 aa16.38■□□□□ 0.21
USP28-212ENST00000544750 SZT2Q5T011 3432 aa16.38■□□□□ 0.21
USP28-212ENST00000544750 IFIT5Q13325 482 aaKnown RBP16.37■□□□□ 0.21
USP28-212ENST00000544750 CNKSR2Q8WXI2 1034 aa16.37■□□□□ 0.21
USP28-212ENST00000544750 ZNF70Q9UC06 446 aaPredicted RBP16.37■□□□□ 0.21
USP28-212ENST00000544750 FKBP5Q13451 457 aaPredicted RBP16.36■□□□□ 0.21
USP28-212ENST00000544750 TNFAIP1Q13829 316 aa16.36■□□□□ 0.21
USP28-212ENST00000544750 WWC1Q8IX03 1113 aa16.36■□□□□ 0.21
USP28-212ENST00000544750 TDRD7Q8NHU6 1098 aaKnown RBP16.36■□□□□ 0.21
USP28-212ENST00000544750 SERPINA10Q9UK55 444 aa16.36■□□□□ 0.21
USP28-212ENST00000544750 PTCH2Q9Y6C5 1203 aa16.36■□□□□ 0.21
USP28-212ENST00000544750 RBM5P52756 815 aaKnown RBP eCLIP16.35■□□□□ 0.21
USP28-212ENST00000544750 EPHA10Q5JZY3 1008 aa16.35■□□□□ 0.21
USP28-212ENST00000544750 FAM43AQ8N2R8 423 aa16.35■□□□□ 0.21
USP28-212ENST00000544750 DDX55Q8NHQ9 600 aaKnown RBP eCLIP16.35■□□□□ 0.21
USP28-212ENST00000544750 ZNF594Q96JF6 807 aaPredicted RBP16.35■□□□□ 0.21
USP28-212ENST00000544750 TMEM106CQ9BVX2 250 aa16.35■□□□□ 0.21
USP28-212ENST00000544750 TDRD3Q9H7E2 651 aaKnown RBP16.35■□□□□ 0.21
USP28-212ENST00000544750 COLQQ9Y215 455 aaPredicted RBP16.35■□□□□ 0.21
USP28-212ENST00000544750 CCL15-CCL14A0A0B4J2E2 113 aa16.34■□□□□ 0.21
USP28-212ENST00000544750 VGLL4Q14135 290 aa16.34■□□□□ 0.21
USP28-212ENST00000544750 TAF1CQ15572 869 aaPredicted RBP16.34■□□□□ 0.21
USP28-212ENST00000544750 CCL15Q16663 113 aa16.34■□□□□ 0.21
USP28-212ENST00000544750 MFSD14BQ5SR56 506 aa16.34■□□□□ 0.21
USP28-212ENST00000544750 BEND3Q5T5X7 828 aa16.34■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms