RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 TRIM44Q96DX7 344 aaPredicted RBP19.28■□□□□ 0.68
COL4A1-204ENST00000543140 KRT85P78386 507 aa19.27■□□□□ 0.68
COL4A1-204ENST00000543140 CSPP1Q1MSJ5 1256 aa19.27■□□□□ 0.68
COL4A1-204ENST00000543140 FAM182BQ5T319 152 aa19.27■□□□□ 0.68
COL4A1-204ENST00000543140 BICDL1Q6ZP65 573 aa19.27■□□□□ 0.68
COL4A1-204ENST00000543140 FAM184AQ8NB25 1140 aa19.27■□□□□ 0.68
COL4A1-204ENST00000543140 H3BQV1 296 aa19.27■□□□□ 0.68
COL4A1-204ENST00000543140 CTDNEP1O95476 244 aa19.27■□□□□ 0.68
COL4A1-204ENST00000543140 APPP05067 770 aa19.27■□□□□ 0.68
COL4A1-204ENST00000543140 PDIA4P13667 645 aaKnown RBP19.27■□□□□ 0.68
COL4A1-204ENST00000543140 PDE6AP16499 860 aa19.27■□□□□ 0.68
COL4A1-204ENST00000543140 IGHMBP2P38935 993 aaKnown RBP19.27■□□□□ 0.68
COL4A1-204ENST00000543140 IFFO2Q5TF58 517 aa19.27■□□□□ 0.68
COL4A1-204ENST00000543140 TTC6Q86TZ1 520 aa19.27■□□□□ 0.68
COL4A1-204ENST00000543140 SPATA5Q8NB90 893 aa19.27■□□□□ 0.68
COL4A1-204ENST00000543140 AGXT2Q9BYV1 514 aa19.27■□□□□ 0.68
COL4A1-204ENST00000543140 LRP5O75197 1615 aa19.27■□□□□ 0.67
COL4A1-204ENST00000543140 BCL9LQ86UU0 1499 aa19.27■□□□□ 0.67
COL4A1-204ENST00000543140 CCDC173Q0VFZ6 552 aa19.26■□□□□ 0.67
COL4A1-204ENST00000543140 RASGRF1Q13972 1273 aa19.26■□□□□ 0.67
COL4A1-204ENST00000543140 NSUN7Q8NE18 718 aaKnown RBP19.26■□□□□ 0.67
COL4A1-204ENST00000543140 TSPY26PQ9H489 355 aa19.26■□□□□ 0.67
COL4A1-204ENST00000543140 ZNF652Q9Y2D9 606 aa19.26■□□□□ 0.67
COL4A1-204ENST00000543140 ZNF213O14771 459 aa19.26■□□□□ 0.67
COL4A1-204ENST00000543140 PHF14O94880 888 aa19.26■□□□□ 0.67
COL4A1-204ENST00000543140 PDIA3P30101 505 aaKnown RBP19.26■□□□□ 0.67
COL4A1-204ENST00000543140 CCDC183Q5T5S1 534 aa19.26■□□□□ 0.67
COL4A1-204ENST00000543140 COL5A3P25940 1745 aaPredicted RBP19.25■□□□□ 0.67
COL4A1-204ENST00000543140 BCAMP50895 628 aa19.25■□□□□ 0.67
COL4A1-204ENST00000543140 VPS72Q15906 364 aa19.25■□□□□ 0.67
COL4A1-204ENST00000543140 ERFEQ4G0M1 354 aa19.25■□□□□ 0.67
COL4A1-204ENST00000543140 TAF1P21675 1872 aa19.25■□□□□ 0.67
COL4A1-204ENST00000543140 PTPDC1A2A3K4 754 aa19.25■□□□□ 0.67
COL4A1-204ENST00000543140 SMARCC2Q8TAQ2 1214 aa19.25■□□□□ 0.67
COL4A1-204ENST00000543140 PRC1O43663 620 aa19.24■□□□□ 0.67
COL4A1-204ENST00000543140 UBE3CQ15386 1083 aa19.24■□□□□ 0.67
COL4A1-204ENST00000543140 C3orf67Q6ZVT6 689 aa19.24■□□□□ 0.67
COL4A1-204ENST00000543140 PPP1R9BQ96SB3 815 aa19.24■□□□□ 0.67
COL4A1-204ENST00000543140 DENND2AQ9ULE3 1009 aa19.24■□□□□ 0.67
COL4A1-204ENST00000543140 COL4A1P02462 1669 aa19.24■□□□□ 0.67
COL4A1-204ENST00000543140 CHRNDQ07001 517 aa19.24■□□□□ 0.67
COL4A1-204ENST00000543140 RAB11FIP4Q86YS3 637 aa19.24■□□□□ 0.67
COL4A1-204ENST00000543140 LLPHQ9BRT6 129 aaKnown RBP19.24■□□□□ 0.67
COL4A1-204ENST00000543140 RALYLQ86SE5 291 aaKnown RBP19.23■□□□□ 0.67
COL4A1-204ENST00000543140 MAGEB6Q8N7X4 407 aa19.23■□□□□ 0.67
COL4A1-204ENST00000543140 TCRBV5S4A2TA0A5A2 114 aa19.23■□□□□ 0.67
COL4A1-204ENST00000543140 MCM5P33992 734 aa19.23■□□□□ 0.67
COL4A1-204ENST00000543140 MB21D2Q8IYB1 491 aaPredicted RBP19.23■□□□□ 0.67
COL4A1-204ENST00000543140 NCOA7Q8NI08 942 aa19.23■□□□□ 0.67
COL4A1-204ENST00000543140 ARAP2Q8WZ64 1704 aa19.23■□□□□ 0.67
COL4A1-204ENST00000543140 ZNF274Q96GC6 653 aaPredicted RBP19.23■□□□□ 0.67
COL4A1-204ENST00000543140 NBPF3Q9H094 633 aa19.23■□□□□ 0.67
COL4A1-204ENST00000543140 IQSEC3Q9UPP2 1182 aaPredicted RBP19.23■□□□□ 0.67
COL4A1-204ENST00000543140 CICQ96RK0 1608 aaPredicted RBP19.23■□□□□ 0.67
COL4A1-204ENST00000543140 WTIPA6NIX2 430 aaPredicted RBP19.22■□□□□ 0.67
COL4A1-204ENST00000543140 CLEC4GQ6UXB4 293 aa19.22■□□□□ 0.67
COL4A1-204ENST00000543140 AIDAQ96BJ3 306 aa19.22■□□□□ 0.67
COL4A1-204ENST00000543140 SPATA32Q96LK8 384 aa19.22■□□□□ 0.67
COL4A1-204ENST00000543140 ANTXR2P58335 489 aa19.22■□□□□ 0.67
COL4A1-204ENST00000543140 GTF2E1P29083 439 aaPredicted RBP19.21■□□□□ 0.67
COL4A1-204ENST00000543140 RESTQ13127 1097 aa19.21■□□□□ 0.67
COL4A1-204ENST00000543140 GIMAP6Q6P9H5 292 aa19.21■□□□□ 0.67
COL4A1-204ENST00000543140 NKX2-3Q8TAU0 364 aa19.21■□□□□ 0.67
COL4A1-204ENST00000543140 BCORQ6W2J9 1755 aa19.21■□□□□ 0.67
COL4A1-204ENST00000543140 GUCY1B3Q02153 619 aa19.21■□□□□ 0.67
COL4A1-204ENST00000543140 MAP3K12Q12852 859 aa19.21■□□□□ 0.67
COL4A1-204ENST00000543140 TBC1D10CQ8IV04 446 aa19.21■□□□□ 0.67
COL4A1-204ENST00000543140 STRBPQ96SI9 672 aaKnown RBP19.21■□□□□ 0.67
COL4A1-204ENST00000543140 ATRNO75882 1429 aa19.21■□□□□ 0.67
COL4A1-204ENST00000543140 KLF18A0A0U1RQI7 1052 aa19.2■□□□□ 0.66
COL4A1-204ENST00000543140 TBC1D9BQ66K14 1250 aa19.2■□□□□ 0.66
COL4A1-204ENST00000543140 SCAND2PQ9GZW5 306 aaPredicted RBP19.2■□□□□ 0.66
COL4A1-204ENST00000543140 USP21Q9UK80 565 aa19.2■□□□□ 0.66
COL4A1-204ENST00000543140 RTL9Q8NET4 1388 aa19.2■□□□□ 0.66
COL4A1-204ENST00000543140 LAMB2P55268 1798 aa19.2■□□□□ 0.66
COL4A1-204ENST00000543140 HMGN5P82970 282 aaKnown RBP19.2■□□□□ 0.66
COL4A1-204ENST00000543140 LEO1Q8WVC0 666 aaPredicted RBP19.2■□□□□ 0.66
COL4A1-204ENST00000543140 CDC5LQ99459 802 aaKnown RBP19.2■□□□□ 0.66
COL4A1-204ENST00000543140 SRP68Q9UHB9 627 aaKnown RBP19.2■□□□□ 0.66
COL4A1-204ENST00000543140 ESPNB1AK53 854 aa19.19■□□□□ 0.66
COL4A1-204ENST00000543140 MBD4O95243 580 aa19.19■□□□□ 0.66
COL4A1-204ENST00000543140 CEBPZQ03701 1054 aaKnown RBP19.19■□□□□ 0.66
COL4A1-204ENST00000543140 ARMT1Q9H993 441 aa19.19■□□□□ 0.66
COL4A1-204ENST00000543140 INCENPQ9NQS7 918 aa19.19■□□□□ 0.66
COL4A1-204ENST00000543140 GOLGA6L4A6NEF3 574 aa19.19■□□□□ 0.66
COL4A1-204ENST00000543140 GOLGA8BA8MQT2 603 aa19.19■□□□□ 0.66
COL4A1-204ENST00000543140 LIG1P18858 919 aa19.19■□□□□ 0.66
COL4A1-204ENST00000543140 TRDNQ13061 729 aa19.19■□□□□ 0.66
COL4A1-204ENST00000543140 FBXL16Q8N461 479 aa19.19■□□□□ 0.66
COL4A1-204ENST00000543140 CCDC24Q8N4L8 307 aa19.19■□□□□ 0.66
COL4A1-204ENST00000543140 ELP1O95163 1332 aa19.19■□□□□ 0.66
COL4A1-204ENST00000543140 SALL1Q9NSC2 1324 aa19.18■□□□□ 0.66
COL4A1-204ENST00000543140 ANKRD18AQ8IVF6 992 aa19.18■□□□□ 0.66
COL4A1-204ENST00000543140 BCL2L12Q9HB09 334 aa19.18■□□□□ 0.66
COL4A1-204ENST00000543140 EVCP57679 992 aa19.18■□□□□ 0.66
COL4A1-204ENST00000543140 FNBP4Q8N3X1 1017 aaPredicted RBP19.18■□□□□ 0.66
COL4A1-204ENST00000543140 CNTNAP4Q9C0A0 1308 aa19.17■□□□□ 0.66
COL4A1-204ENST00000543140 GNPATO15228 680 aa19.17■□□□□ 0.66
COL4A1-204ENST00000543140 LETM1O95202 739 aaPredicted RBP19.17■□□□□ 0.66
COL4A1-204ENST00000543140 FDPSP14324 419 aaKnown RBP19.17■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms