RNA–Protein interactions for RNA: ENST00000542953.1

NPIPB3-211, Transcript of nuclear pore complex interacting protein family member B3, humanhuman

TSL 4

Gene NPIPB3, Length 573 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPIPB3-211ENST00000542953 ZNF34Q8IZ26 560 aa6.49□□□□□ -1.37
NPIPB3-211ENST00000542953 GAS2L2Q8NHY3 880 aa6.49□□□□□ -1.37
NPIPB3-211ENST00000542953 COL25A1Q9BXS0 654 aaPredicted RBP6.49□□□□□ -1.37
NPIPB3-211ENST00000542953 PRKD2Q9BZL6 878 aa6.49□□□□□ -1.37
NPIPB3-211ENST00000542953 TIMELESSQ9UNS1 1208 aa6.49□□□□□ -1.37
NPIPB3-211ENST00000542953 POLR2AP24928 1970 aaKnown RBP6.49□□□□□ -1.37
NPIPB3-211ENST00000542953 CLSPNQ9HAW4 1339 aa6.49□□□□□ -1.37
NPIPB3-211ENST00000542953 LRRC37AA6NMS7 1700 aa6.48□□□□□ -1.37
NPIPB3-211ENST00000542953 INHBEP58166 350 aa6.48□□□□□ -1.37
NPIPB3-211ENST00000542953 PPP4CP60510 307 aa6.48□□□□□ -1.37
NPIPB3-211ENST00000542953 RBM26Q5T8P6 1007 aaKnown RBP6.48□□□□□ -1.37
NPIPB3-211ENST00000542953 ANGEL2Q5VTE6 544 aaKnown RBP6.48□□□□□ -1.37
NPIPB3-211ENST00000542953 TMC4Q7Z404 712 aa6.48□□□□□ -1.37
NPIPB3-211ENST00000542953 ERO1AQ96HE7 468 aa6.48□□□□□ -1.37
NPIPB3-211ENST00000542953 NLRP3Q96P20 1036 aa6.48□□□□□ -1.37
NPIPB3-211ENST00000542953 KDM3BQ7LBC6 1761 aa6.47□□□□□ -1.37
NPIPB3-211ENST00000542953 TTC28Q96AY4 2481 aa6.47□□□□□ -1.37
NPIPB3-211ENST00000542953 SOX1O00570 391 aaPredicted RBP6.47□□□□□ -1.37
NPIPB3-211ENST00000542953 GTPBP6O43824 516 aaPredicted RBP6.47□□□□□ -1.37
NPIPB3-211ENST00000542953 GPTP24298 496 aa6.47□□□□□ -1.37
NPIPB3-211ENST00000542953 CAP1Q01518 475 aa6.47□□□□□ -1.37
NPIPB3-211ENST00000542953 GRAPQ13588 217 aa6.47□□□□□ -1.37
NPIPB3-211ENST00000542953 SCARF1Q14162 830 aa6.47□□□□□ -1.37
NPIPB3-211ENST00000542953 WASHC4Q2M389 1173 aa6.47□□□□□ -1.37
NPIPB3-211ENST00000542953 PARP10Q53GL7 1025 aa6.47□□□□□ -1.37
NPIPB3-211ENST00000542953 TJAP1Q5JTD0 557 aa6.47□□□□□ -1.37
NPIPB3-211ENST00000542953 SPRYD7Q5W111 196 aa6.47□□□□□ -1.37
NPIPB3-211ENST00000542953 UBE2Q1Q7Z7E8 422 aa6.47□□□□□ -1.37
NPIPB3-211ENST00000542953 PACS2Q86VP3 889 aa6.47□□□□□ -1.37
NPIPB3-211ENST00000542953 GRAPLQ8TC17 118 aaPredicted RBP6.47□□□□□ -1.37
NPIPB3-211ENST00000542953 DBNDD1Q9H9R9 158 aa6.47□□□□□ -1.37
NPIPB3-211ENST00000542953 EFCC1Q9HA90 598 aa6.47□□□□□ -1.37
NPIPB3-211ENST00000542953 KCNQ5Q9NR82 932 aa6.47□□□□□ -1.37
NPIPB3-211ENST00000542953 MANSC4A6NHS7 340 aaPredicted RBP6.46□□□□□ -1.38
NPIPB3-211ENST00000542953 ECE2O60344 883 aa6.46□□□□□ -1.38
NPIPB3-211ENST00000542953 PTPN12Q05209 780 aaKnown RBP6.46□□□□□ -1.38
NPIPB3-211ENST00000542953 LDLRAD1Q5T700 205 aa6.46□□□□□ -1.38
NPIPB3-211ENST00000542953 GIGYF2Q6Y7W6 1299 aaKnown RBP6.46□□□□□ -1.38
NPIPB3-211ENST00000542953 TTLL7Q6ZT98 887 aa6.46□□□□□ -1.38
NPIPB3-211ENST00000542953 PPP1R42Q7Z4L9 355 aa6.46□□□□□ -1.38
NPIPB3-211ENST00000542953 NBPF11Q86T75 865 aa6.46□□□□□ -1.38
NPIPB3-211ENST00000542953 DDX60Q8IY21 1712 aaKnown RBP6.46□□□□□ -1.38
NPIPB3-211ENST00000542953 AGBL3Q8NEM8 1001 aa6.46□□□□□ -1.38
NPIPB3-211ENST00000542953 CD99L2Q8TCZ2 262 aa6.46□□□□□ -1.38
NPIPB3-211ENST00000542953 GMLQ99445 158 aa6.46□□□□□ -1.38
NPIPB3-211ENST00000542953 PANK3Q9H999 370 aa6.46□□□□□ -1.38
NPIPB3-211ENST00000542953 STXBP5LQ9Y2K9 1186 aa6.46□□□□□ -1.38
NPIPB3-211ENST00000542953 NUP98P52948 1817 aa6.46□□□□□ -1.38
NPIPB3-211ENST00000542953 LAMB1P07942 1786 aa6.45□□□□□ -1.38
NPIPB3-211ENST00000542953 IGF2BP3O00425 579 aaKnown RBP eCLIP6.45□□□□□ -1.38
NPIPB3-211ENST00000542953 DIAPH1O60610 1272 aaKnown RBP6.45□□□□□ -1.38
NPIPB3-211ENST00000542953 ZBTB48P10074 688 aaPredicted RBP6.45□□□□□ -1.38
NPIPB3-211ENST00000542953 CRHR2Q13324 411 aa6.45□□□□□ -1.38
NPIPB3-211ENST00000542953 TCIRG1Q13488 830 aa6.45□□□□□ -1.38
NPIPB3-211ENST00000542953 SLC4A8Q2Y0W8 1093 aa6.45□□□□□ -1.38
NPIPB3-211ENST00000542953 SLC9C1Q4G0N8 1177 aa6.45□□□□□ -1.38
NPIPB3-211ENST00000542953 KIF6Q6ZMV9 814 aa6.45□□□□□ -1.38
NPIPB3-211ENST00000542953 SHISA4Q96DD7 197 aa6.45□□□□□ -1.38
NPIPB3-211ENST00000542953 UTP14AQ9BVJ6 771 aaKnown RBP6.45□□□□□ -1.38
NPIPB3-211ENST00000542953 PRDM6Q9NQX0 595 aa6.45□□□□□ -1.38
NPIPB3-211ENST00000542953 COL3A1P02461 1466 aaPredicted RBP6.45□□□□□ -1.38
NPIPB3-211ENST00000542953 ERBB4Q15303 1308 aa6.45□□□□□ -1.38
NPIPB3-211ENST00000542953 LAMB4A4D0S4 1761 aa6.44□□□□□ -1.38
NPIPB3-211ENST00000542953 ANKRD36CQ5JPF3 1778 aa6.44□□□□□ -1.38
NPIPB3-211ENST00000542953 ZBTB7BO15156 539 aaPredicted RBP6.44□□□□□ -1.38
NPIPB3-211ENST00000542953 NF2P35240 595 aa6.44□□□□□ -1.38
NPIPB3-211ENST00000542953 SP3Q02447 781 aa6.44□□□□□ -1.38
NPIPB3-211ENST00000542953 AMER1Q5JTC6 1135 aaPredicted RBP6.44□□□□□ -1.38
NPIPB3-211ENST00000542953 ZNF787Q6DD87 383 aa6.44□□□□□ -1.38
NPIPB3-211ENST00000542953 RSBN1LQ6PCB5 846 aaPredicted RBP6.44□□□□□ -1.38
NPIPB3-211ENST00000542953 DDX46Q7L014 1031 aaKnown RBP6.44□□□□□ -1.38
NPIPB3-211ENST00000542953 IL21Q9HBE4 155 aa6.44□□□□□ -1.38
NPIPB3-211ENST00000542953 MYOZ2Q9NPC6 264 aa6.44□□□□□ -1.38
NPIPB3-211ENST00000542953 POLLQ9UGP5 575 aa6.44□□□□□ -1.38
NPIPB3-211ENST00000542953 PTCH2Q9Y6C5 1203 aa6.44□□□□□ -1.38
NPIPB3-211ENST00000542953 EYSQ5T1H1 3165 aa6.44□□□□□ -1.38
NPIPB3-211ENST00000542953 SCN9AQ15858 1988 aa6.44□□□□□ -1.38
NPIPB3-211ENST00000542953 TESPA1A2RU30 521 aaPredicted RBP6.43□□□□□ -1.38
NPIPB3-211ENST00000542953 UNCXA6NJT0 531 aa6.43□□□□□ -1.38
NPIPB3-211ENST00000542953 USP17L8P0C7I0 530 aa6.43□□□□□ -1.38
NPIPB3-211ENST00000542953 CAMK2BQ13554 666 aa6.43□□□□□ -1.38
NPIPB3-211ENST00000542953 TTLL12Q14166 644 aaPredicted RBP6.43□□□□□ -1.38
NPIPB3-211ENST00000542953 MAP3K11Q16584 847 aa6.43□□□□□ -1.38
NPIPB3-211ENST00000542953 PRAMEF18Q5VWM3 479 aa6.43□□□□□ -1.38
NPIPB3-211ENST00000542953 PPP1R18Q6NYC8 613 aa6.43□□□□□ -1.38
NPIPB3-211ENST00000542953 ARMC9Q7Z3E5 817 aa6.43□□□□□ -1.38
NPIPB3-211ENST00000542953 PHF6Q8IWS0 365 aaKnown RBP eCLIP6.43□□□□□ -1.38
NPIPB3-211ENST00000542953 CCER1Q8TC90 406 aaPredicted RBP6.43□□□□□ -1.38
NPIPB3-211ENST00000542953 DPF3Q92784 378 aa6.43□□□□□ -1.38
NPIPB3-211ENST00000542953 EYA3Q99504 573 aa6.43□□□□□ -1.38
NPIPB3-211ENST00000542953 HTATIP2Q9BUP3 242 aa6.43□□□□□ -1.38
NPIPB3-211ENST00000542953 ZBTB3Q9H5J0 574 aa6.43□□□□□ -1.38
NPIPB3-211ENST00000542953 MTMR10Q9NXD2 777 aa6.43□□□□□ -1.38
NPIPB3-211ENST00000542953 NR2E3Q9Y5X4 410 aa6.43□□□□□ -1.38
NPIPB3-211ENST00000542953 LAMB2P55268 1798 aa6.42□□□□□ -1.38
NPIPB3-211ENST00000542953 WTIPA6NIX2 430 aaPredicted RBP6.42□□□□□ -1.38
NPIPB3-211ENST00000542953 C6orf229H3BNL8 230 aa6.42□□□□□ -1.38
NPIPB3-211ENST00000542953 HSPA5P11021 654 aaKnown RBP6.42□□□□□ -1.38
NPIPB3-211ENST00000542953 HCLS1P14317 486 aaPredicted RBP6.42□□□□□ -1.38
NPIPB3-211ENST00000542953 GPSM2P81274 684 aa6.42□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms