RNA–Protein interactions for RNA: ENST00000542717.1

CHD4-209, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 3

Gene CHD4, Length 204 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-209ENST00000542717 FBXL18Q96ME1 805 aa4.46□□□□□ -1.7
CHD4-209ENST00000542717 CRISPLD2Q9H0B8 497 aa4.46□□□□□ -1.7
CHD4-209ENST00000542717 C11orf16Q9NQ32 467 aa4.46□□□□□ -1.7
CHD4-209ENST00000542717 USP16Q9Y5T5 823 aa4.46□□□□□ -1.7
CHD4-209ENST00000542717 ADGRA2Q96PE1 1338 aa4.46□□□□□ -1.7
CHD4-209ENST00000542717 KIF20BQ96Q89 1820 aa4.45□□□□□ -1.7
CHD4-209ENST00000542717 USP17L3A6NCW0 530 aa4.45□□□□□ -1.7
CHD4-209ENST00000542717 USP17L4A6NCW7 530 aa4.45□□□□□ -1.7
CHD4-209ENST00000542717 UNCXA6NJT0 531 aa4.45□□□□□ -1.7
CHD4-209ENST00000542717 BMP1P13497 986 aa4.45□□□□□ -1.7
CHD4-209ENST00000542717 ITGB8P26012 769 aa4.45□□□□□ -1.7
CHD4-209ENST00000542717 CTGFP29279 349 aa4.45□□□□□ -1.7
CHD4-209ENST00000542717 KCNQ1P51787 676 aa4.45□□□□□ -1.7
CHD4-209ENST00000542717 KCTD2Q14681 263 aa4.45□□□□□ -1.7
CHD4-209ENST00000542717 C9orf50Q5SZB4 431 aa4.45□□□□□ -1.7
CHD4-209ENST00000542717 AKNAD1Q5T1N1 836 aa4.45□□□□□ -1.7
CHD4-209ENST00000542717 USP17L1Q7RTZ2 530 aa4.45□□□□□ -1.7
CHD4-209ENST00000542717 TMC4Q7Z404 712 aa4.45□□□□□ -1.7
CHD4-209ENST00000542717 MICALL1Q8N3F8 863 aa4.45□□□□□ -1.7
CHD4-209ENST00000542717 XRN2Q9H0D6 950 aaKnown RBP eCLIP4.45□□□□□ -1.7
CHD4-209ENST00000542717 DEFB129Q9H1M3 183 aa4.45□□□□□ -1.7
CHD4-209ENST00000542717 ZNF576Q9H609 170 aa4.45□□□□□ -1.7
CHD4-209ENST00000542717 PAK6Q9NQU5 681 aaPredicted RBP4.45□□□□□ -1.7
CHD4-209ENST00000542717 POLLQ9UGP5 575 aa4.45□□□□□ -1.7
CHD4-209ENST00000542717 GABRQQ9UN88 632 aa4.45□□□□□ -1.7
CHD4-209ENST00000542717 BTBD19C9JJ37 291 aa4.44□□□□□ -1.7
CHD4-209ENST00000542717 USP2O75604 605 aaPredicted RBP4.44□□□□□ -1.7
CHD4-209ENST00000542717 NTSR2O95665 410 aa4.44□□□□□ -1.7
CHD4-209ENST00000542717 CETPP11597 493 aa4.44□□□□□ -1.7
CHD4-209ENST00000542717 FLT3LGP49771 235 aa4.44□□□□□ -1.7
CHD4-209ENST00000542717 GPSM2P81274 684 aa4.44□□□□□ -1.7
CHD4-209ENST00000542717 TFF2Q03403 129 aa4.44□□□□□ -1.7
CHD4-209ENST00000542717 C17orf99Q6UX52 265 aa4.44□□□□□ -1.7
CHD4-209ENST00000542717 ERMP1Q7Z2K6 904 aa4.44□□□□□ -1.7
CHD4-209ENST00000542717 UTP14AQ9BVJ6 771 aaKnown RBP4.44□□□□□ -1.7
CHD4-209ENST00000542717 PRDM12Q9H4Q4 367 aa4.44□□□□□ -1.7
CHD4-209ENST00000542717 ZBTB3Q9H5J0 574 aa4.44□□□□□ -1.7
CHD4-209ENST00000542717 HMX1Q9NP08 348 aaPredicted RBP4.44□□□□□ -1.7
CHD4-209ENST00000542717 CXXC1Q9P0U4 656 aaPredicted RBP4.44□□□□□ -1.7
CHD4-209ENST00000542717 CSADQ9Y600 493 aa4.44□□□□□ -1.7
CHD4-209ENST00000542717 MYO9BQ13459 2157 aa4.44□□□□□ -1.7
CHD4-209ENST00000542717 UBN2Q6ZU65 1347 aa4.44□□□□□ -1.7
CHD4-209ENST00000542717 IBTKQ9P2D0 1353 aaPredicted RBP4.43□□□□□ -1.7
CHD4-209ENST00000542717 UBR2Q8IWV8 1755 aa4.43□□□□□ -1.7
CHD4-209ENST00000542717 BTBD11A6QL63 1104 aa4.43□□□□□ -1.7
CHD4-209ENST00000542717 ERVV-1B6SEH8 477 aa4.43□□□□□ -1.7
CHD4-209ENST00000542717 TNPO2O14787 897 aaKnown RBP4.43□□□□□ -1.7
CHD4-209ENST00000542717 KCNQ3O43525 872 aa4.43□□□□□ -1.7
CHD4-209ENST00000542717 GFRA3O60609 400 aa4.43□□□□□ -1.7
CHD4-209ENST00000542717 UFL1O94874 794 aa4.43□□□□□ -1.7
CHD4-209ENST00000542717 SNRPA1P09661 255 aaKnown RBP4.43□□□□□ -1.7
CHD4-209ENST00000542717 U2AF1L5P0DN76 240 aaPredicted RBP4.43□□□□□ -1.7
CHD4-209ENST00000542717 HCLS1P14317 486 aaPredicted RBP4.43□□□□□ -1.7
CHD4-209ENST00000542717 DNAJB2P25686 324 aa4.43□□□□□ -1.7
CHD4-209ENST00000542717 U2AF1Q01081 240 aaKnown RBP eCLIP4.43□□□□□ -1.7
CHD4-209ENST00000542717 COL9A2Q14055 689 aaPredicted RBP4.43□□□□□ -1.7
CHD4-209ENST00000542717 LRRC26Q2I0M4 334 aa4.43□□□□□ -1.7
CHD4-209ENST00000542717 NBPF12Q5TAG4 269 aaPredicted RBP4.43□□□□□ -1.7
CHD4-209ENST00000542717 NBPF10Q6P3W6 841 aaKnown RBP4.43□□□□□ -1.7
CHD4-209ENST00000542717 RIC3Q7Z5B4 369 aa4.43□□□□□ -1.7
CHD4-209ENST00000542717 TBC1D16Q8TBP0 767 aa4.43□□□□□ -1.7
CHD4-209ENST00000542717 PXYLP1Q8TE99 480 aa4.43□□□□□ -1.7
CHD4-209ENST00000542717 TIFAQ96CG3 184 aa4.43□□□□□ -1.7
CHD4-209ENST00000542717 RNPC3Q96LT9 517 aaKnown RBP4.43□□□□□ -1.7
CHD4-209ENST00000542717 GMLQ99445 158 aa4.43□□□□□ -1.7
CHD4-209ENST00000542717 PHOX2BQ99453 314 aa4.43□□□□□ -1.7
CHD4-209ENST00000542717 KCNH6Q9H252 994 aa4.43□□□□□ -1.7
CHD4-209ENST00000542717 VEZTQ9HBM0 779 aa4.43□□□□□ -1.7
CHD4-209ENST00000542717 ZCCHC17Q9NP64 241 aaKnown RBP4.43□□□□□ -1.7
CHD4-209ENST00000542717 PRDM5Q9NQX1 630 aaPredicted RBP4.43□□□□□ -1.7
CHD4-209ENST00000542717 ANKIB1Q9P2G1 1089 aa4.43□□□□□ -1.7
CHD4-209ENST00000542717 SSC5DA1L4H1 1573 aa4.43□□□□□ -1.7
CHD4-209ENST00000542717 DDX60Q8IY21 1712 aaKnown RBP4.43□□□□□ -1.7
CHD4-209ENST00000542717 PFASO15067 1338 aa4.43□□□□□ -1.7
CHD4-209ENST00000542717 MAP3K15Q6ZN16 1313 aa4.43□□□□□ -1.7
CHD4-209ENST00000542717 SCN9AQ15858 1988 aa4.42□□□□□ -1.7
CHD4-209ENST00000542717 PI4K2BG5E9Z4 385 aa4.42□□□□□ -1.7
CHD4-209ENST00000542717 MYO1BO43795 1136 aa4.42□□□□□ -1.7
CHD4-209ENST00000542717 HMOX1P09601 288 aa4.42□□□□□ -1.7
CHD4-209ENST00000542717 SNAPC2Q13487 334 aa4.42□□□□□ -1.7
CHD4-209ENST00000542717 DLGAP5Q15398 846 aa4.42□□□□□ -1.7
CHD4-209ENST00000542717 MTHFSDQ2M296 383 aaKnown RBP4.42□□□□□ -1.7
CHD4-209ENST00000542717 PARP10Q53GL7 1025 aa4.42□□□□□ -1.7
CHD4-209ENST00000542717 DDX60LQ5H9U9 1706 aaKnown RBP4.42□□□□□ -1.7
CHD4-209ENST00000542717 SLC10A5Q5PT55 438 aa4.42□□□□□ -1.7
CHD4-209ENST00000542717 CCDC129Q6ZRS4 1044 aa4.42□□□□□ -1.7
CHD4-209ENST00000542717 KHSRPQ92945 711 aaKnown RBP eCLIP4.42□□□□□ -1.7
CHD4-209ENST00000542717 COA7Q96BR5 231 aa4.42□□□□□ -1.7
CHD4-209ENST00000542717 MXD3Q9BW11 206 aa4.42□□□□□ -1.7
CHD4-209ENST00000542717 DUOX1Q9NRD9 1551 aa4.42□□□□□ -1.7
CHD4-209ENST00000542717 BAHCC1Q9P281 2608 aa4.42□□□□□ -1.7
CHD4-209ENST00000542717 GGA1Q9UJY5 639 aa4.42□□□□□ -1.7
CHD4-209ENST00000542717 KCNH4Q9UQ05 1017 aa4.42□□□□□ -1.7
CHD4-209ENST00000542717 RRP7AQ9Y3A4 280 aaKnown RBP4.42□□□□□ -1.7
CHD4-209ENST00000542717 PPP2R3BQ9Y5P8 575 aa4.42□□□□□ -1.7
CHD4-209ENST00000542717 COL1A1P02452 1464 aaPredicted RBP4.42□□□□□ -1.7
CHD4-209ENST00000542717 BDP1A6H8Y1 2624 aa4.42□□□□□ -1.7
CHD4-209ENST00000542717 HSFX4A0A1B0GTS1 333 aaPredicted RBP4.41□□□□□ -1.7
CHD4-209ENST00000542717 HSFX3A0A1B0GWH4 333 aaPredicted RBP4.41□□□□□ -1.7
CHD4-209ENST00000542717 CLRN2A0PK11 232 aa4.41□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms