RNA–Protein interactions for RNA: ENST00000541488.1

PRKDC-210, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 3

Gene PRKDC, Length 719 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-210ENST00000541488 SALL4Q9UJQ4 1053 aa7.7□□□□□ -1.18
PRKDC-210ENST00000541488 TNFRSF21O75509 655 aa7.69□□□□□ -1.18
PRKDC-210ENST00000541488 NPR3P17342 541 aa7.69□□□□□ -1.18
PRKDC-210ENST00000541488 EPHA1P21709 976 aa7.69□□□□□ -1.18
PRKDC-210ENST00000541488 B4GALNT3Q6L9W6 998 aa7.69□□□□□ -1.18
PRKDC-210ENST00000541488 XKR5Q6UX68 686 aa7.69□□□□□ -1.18
PRKDC-210ENST00000541488 SPOCD1Q6ZMY3 1216 aa7.69□□□□□ -1.18
PRKDC-210ENST00000541488 TRIM42Q8IWZ5 723 aa7.69□□□□□ -1.18
PRKDC-210ENST00000541488 GALNT11Q8NCW6 608 aa7.69□□□□□ -1.18
PRKDC-210ENST00000541488 ASIC4Q96FT7 647 aa7.69□□□□□ -1.18
PRKDC-210ENST00000541488 DBNDD2Q9BQY9 259 aa7.69□□□□□ -1.18
PRKDC-210ENST00000541488 ICMTO60725 284 aa7.68□□□□□ -1.18
PRKDC-210ENST00000541488 POLR3DP05423 398 aaPredicted RBP7.68□□□□□ -1.18
PRKDC-210ENST00000541488 RNF43Q68DV7 783 aa7.68□□□□□ -1.18
PRKDC-210ENST00000541488 LATS2Q9NRM7 1088 aa7.68□□□□□ -1.18
PRKDC-210ENST00000541488 FAM177BA6PVY3 158 aa7.67□□□□□ -1.18
PRKDC-210ENST00000541488 DDX3YO15523 660 aaKnown RBP7.67□□□□□ -1.18
PRKDC-210ENST00000541488 PTPRAP18433 802 aa7.67□□□□□ -1.18
PRKDC-210ENST00000541488 LCE5AQ5TCM9 118 aa7.67□□□□□ -1.18
PRKDC-210ENST00000541488 ZC3HAV1Q7Z2W4 902 aaKnown RBP7.67□□□□□ -1.18
PRKDC-210ENST00000541488 SLC7A3Q8WY07 619 aa7.67□□□□□ -1.18
PRKDC-210ENST00000541488 OSMRQ99650 979 aa7.67□□□□□ -1.18
PRKDC-210ENST00000541488 KCNK4Q9NYG8 393 aa7.67□□□□□ -1.18
PRKDC-210ENST00000541488 HMX2A2RU54 273 aa7.66□□□□□ -1.18
PRKDC-210ENST00000541488 WISP1O95388 367 aa7.66□□□□□ -1.18
PRKDC-210ENST00000541488 SNX29Q8TEQ0 813 aa7.66□□□□□ -1.18
PRKDC-210ENST00000541488 DZANK1Q9NVP4 752 aa7.66□□□□□ -1.18
PRKDC-210ENST00000541488 BRPF3Q9ULD4 1205 aa7.66□□□□□ -1.18
PRKDC-210ENST00000541488 NFKBIEO00221 500 aa7.65□□□□□ -1.18
PRKDC-210ENST00000541488 PDE2AO00408 941 aaPredicted RBP7.65□□□□□ -1.18
PRKDC-210ENST00000541488 FSCN2O14926 492 aa7.65□□□□□ -1.18
PRKDC-210ENST00000541488 USP5P45974 858 aa7.65□□□□□ -1.18
PRKDC-210ENST00000541488 FAM117BQ6P1L5 589 aa7.65□□□□□ -1.18
PRKDC-210ENST00000541488 CBLL1Q75N03 491 aa7.65□□□□□ -1.18
PRKDC-210ENST00000541488 GJD3Q8N144 294 aa7.65□□□□□ -1.18
PRKDC-210ENST00000541488 ASAP3Q8TDY4 903 aa7.65□□□□□ -1.18
PRKDC-210ENST00000541488 ZKSCAN3Q9BRR0 538 aa7.65□□□□□ -1.18
PRKDC-210ENST00000541488 MUC3BQ9H195 1237 aa7.65□□□□□ -1.18
PRKDC-210ENST00000541488 HOXA10P31260 410 aaPredicted RBP7.64□□□□□ -1.19
PRKDC-210ENST00000541488 CD68P34810 354 aaPredicted RBP7.64□□□□□ -1.19
PRKDC-210ENST00000541488 EHHADHQ08426 723 aa7.64□□□□□ -1.19
PRKDC-210ENST00000541488 HGSNATQ68CP4 663 aa7.64□□□□□ -1.19
PRKDC-210ENST00000541488 ACAD11Q709F0 780 aa7.64□□□□□ -1.19
PRKDC-210ENST00000541488 SHKBP1Q8TBC3 707 aa7.64□□□□□ -1.19
PRKDC-210ENST00000541488 PMEPA1Q969W9 287 aa7.64□□□□□ -1.19
PRKDC-210ENST00000541488 UTP4Q969X6 686 aaKnown RBP7.64□□□□□ -1.19
PRKDC-210ENST00000541488 KLHDC7BQ96G42 594 aa7.64□□□□□ -1.19
PRKDC-210ENST00000541488 EGFL7Q9UHF1 273 aa7.64□□□□□ -1.19
PRKDC-210ENST00000541488 METTL12A8MUP2 240 aa7.63□□□□□ -1.19
PRKDC-210ENST00000541488 ITGB5P18084 799 aa7.63□□□□□ -1.19
PRKDC-210ENST00000541488 CABP4P57796 275 aa7.63□□□□□ -1.19
PRKDC-210ENST00000541488 NLRP12P59046 1061 aa7.63□□□□□ -1.19
PRKDC-210ENST00000541488 ECM1Q16610 540 aa7.63□□□□□ -1.19
PRKDC-210ENST00000541488 KRTAP5-3Q6L8H2 238 aa7.63□□□□□ -1.19
PRKDC-210ENST00000541488 MAP4K3Q8IVH8 894 aa7.63□□□□□ -1.19
PRKDC-210ENST00000541488 CACTIN-AS1Q8N1I8 211 aa7.63□□□□□ -1.19
PRKDC-210ENST00000541488 TMC1Q8TDI8 760 aa7.63□□□□□ -1.19
PRKDC-210ENST00000541488 UBASH3BQ8TF42 649 aa7.63□□□□□ -1.19
PRKDC-210ENST00000541488 SRA1Q9HD15 236 aaKnown RBP7.63□□□□□ -1.19
PRKDC-210ENST00000541488 AMOTL2Q9Y2J4 779 aa7.63□□□□□ -1.19
PRKDC-210ENST00000541488 ADAM11O75078 769 aa7.62□□□□□ -1.19
PRKDC-210ENST00000541488 ARHGAP4P98171 946 aa7.62□□□□□ -1.19
PRKDC-210ENST00000541488 USPL1Q5W0Q7 1092 aa7.62□□□□□ -1.19
PRKDC-210ENST00000541488 TXNDC2Q86VQ3 553 aa7.62□□□□□ -1.19
PRKDC-210ENST00000541488 ADAM19Q9H013 955 aa7.62□□□□□ -1.19
PRKDC-210ENST00000541488 ZFYVE28Q9HCC9 887 aa7.62□□□□□ -1.19
PRKDC-210ENST00000541488 SEC31BQ9NQW1 1179 aa7.62□□□□□ -1.19
PRKDC-210ENST00000541488 ANGEL1Q9UNK9 670 aaKnown RBP7.62□□□□□ -1.19
PRKDC-210ENST00000541488 H3BRJ5 948 aa7.61□□□□□ -1.19
PRKDC-210ENST00000541488 NDUFB5O43674 189 aa7.61□□□□□ -1.19
PRKDC-210ENST00000541488 EDN3P14138 238 aa7.61□□□□□ -1.19
PRKDC-210ENST00000541488 ZNF124Q15973 351 aa7.61□□□□□ -1.19
PRKDC-210ENST00000541488 DUOXA2Q1HG44 320 aa7.61□□□□□ -1.19
PRKDC-210ENST00000541488 UVSSAQ2YD98 709 aa7.61□□□□□ -1.19
PRKDC-210ENST00000541488 ZNF648Q5T619 568 aaPredicted RBP7.61□□□□□ -1.19
PRKDC-210ENST00000541488 PEAR1Q5VY43 1037 aaPredicted RBP7.61□□□□□ -1.19
PRKDC-210ENST00000541488 DCAF11Q8TEB1 546 aa7.61□□□□□ -1.19
PRKDC-210ENST00000541488 FOXD4L4Q8WXT5 416 aaPredicted RBP7.61□□□□□ -1.19
PRKDC-210ENST00000541488 NXPE3Q969Y0 559 aa7.61□□□□□ -1.19
PRKDC-210ENST00000541488 CEP41Q9BYV8 373 aa7.61□□□□□ -1.19
PRKDC-210ENST00000541488 ORC1Q13415 861 aa7.6□□□□□ -1.19
PRKDC-210ENST00000541488 TMEM102Q8N9M5 508 aaPredicted RBP7.6□□□□□ -1.19
PRKDC-210ENST00000541488 FAM46AQ96IP4 442 aaKnown RBP7.6□□□□□ -1.19
PRKDC-210ENST00000541488 DBX1A6NMT0 343 aa7.59□□□□□ -1.19
PRKDC-210ENST00000541488 TM4SF5O14894 197 aa7.59□□□□□ -1.19
PRKDC-210ENST00000541488 JUNBP17275 347 aaPredicted RBP7.59□□□□□ -1.19
PRKDC-210ENST00000541488 KLHL23Q8NBE8 558 aa7.59□□□□□ -1.19
PRKDC-210ENST00000541488 MYRFLQ96LU7 910 aa7.59□□□□□ -1.19
PRKDC-210ENST00000541488 BIN2Q9UBW5 565 aaPredicted RBP7.59□□□□□ -1.19
PRKDC-210ENST00000541488 SOX13Q9UN79 622 aa7.59□□□□□ -1.19
PRKDC-210ENST00000541488 IKBKEQ14164 716 aa7.58□□□□□ -1.2
PRKDC-210ENST00000541488 KIAA1211Q6ZU35 1233 aa7.58□□□□□ -1.2
PRKDC-210ENST00000541488 VN1R5Q7Z5H4 357 aa7.58□□□□□ -1.2
PRKDC-210ENST00000541488 BSNDQ8WZ55 320 aa7.58□□□□□ -1.2
PRKDC-210ENST00000541488 NIF3L1Q9GZT8 377 aa7.58□□□□□ -1.2
PRKDC-210ENST00000541488 WDR64B1ANS9 1081 aa7.57□□□□□ -1.2
PRKDC-210ENST00000541488 SOX1O00570 391 aaPredicted RBP7.57□□□□□ -1.2
PRKDC-210ENST00000541488 PIP4K2BP78356 416 aa7.57□□□□□ -1.2
PRKDC-210ENST00000541488 PDE4CQ08493 712 aa7.57□□□□□ -1.2
PRKDC-210ENST00000541488 NFXL1Q6ZNB6 911 aa7.57□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms