RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 EAF2Q96CJ1 260 aaPredicted RBP21.44■■□□□ 1.02
CLSTN3-210ENST00000540931 SUGT1Q9Y2Z0 365 aa21.44■■□□□ 1.02
CLSTN3-210ENST00000540931 FAM205AQ6ZU69 1335 aa21.44■■□□□ 1.02
CLSTN3-210ENST00000540931 SNAP23O00161 211 aa21.43■■□□□ 1.02
CLSTN3-210ENST00000540931 VIL1P09327 827 aaKnown RBP21.43■■□□□ 1.02
CLSTN3-210ENST00000540931 BCAMP50895 628 aa21.43■■□□□ 1.02
CLSTN3-210ENST00000540931 CXCL9Q07325 125 aa21.43■■□□□ 1.02
CLSTN3-210ENST00000540931 TTC39AQ5SRH9 613 aa21.43■■□□□ 1.02
CLSTN3-210ENST00000540931 ANKRD45Q5TZF3 282 aa21.43■■□□□ 1.02
CLSTN3-210ENST00000540931 CENPQQ7L2Z9 268 aaPredicted RBP21.43■■□□□ 1.02
CLSTN3-210ENST00000540931 PPIL4Q8WUA2 492 aaKnown RBP eCLIP21.43■■□□□ 1.02
CLSTN3-210ENST00000540931 DPF2Q92785 391 aa21.43■■□□□ 1.02
CLSTN3-210ENST00000540931 CCDC136Q96JN2 1154 aa21.43■■□□□ 1.02
CLSTN3-210ENST00000540931 GPR101Q96P66 508 aaPredicted RBP21.43■■□□□ 1.02
CLSTN3-210ENST00000540931 IL1RAPL2Q9NP60 686 aa21.43■■□□□ 1.02
CLSTN3-210ENST00000540931 TIAM2Q8IVF5 1701 aa21.43■■□□□ 1.02
CLSTN3-210ENST00000540931 IQCA1LA6NCM1 817 aa21.42■■□□□ 1.02
CLSTN3-210ENST00000540931 ARID4AP29374 1257 aaPredicted RBP21.42■■□□□ 1.02
CLSTN3-210ENST00000540931 TMED8Q6PL24 325 aaPredicted RBP21.42■■□□□ 1.02
CLSTN3-210ENST00000540931 PPP4R2Q9NY27 417 aa21.42■■□□□ 1.02
CLSTN3-210ENST00000540931 IGHDP01880 384 aa21.41■■□□□ 1.02
CLSTN3-210ENST00000540931 KLRK1P26718 216 aa21.41■■□□□ 1.02
CLSTN3-210ENST00000540931 LMOD1P29536 600 aaPredicted RBP21.41■■□□□ 1.02
CLSTN3-210ENST00000540931 L3MBTL3Q96JM7 780 aaPredicted RBP21.41■■□□□ 1.02
CLSTN3-210ENST00000540931 TTC41PQ6P2S7 1318 aa21.4■■□□□ 1.02
CLSTN3-210ENST00000540931 WTIPA6NIX2 430 aaPredicted RBP21.4■■□□□ 1.02
CLSTN3-210ENST00000540931 YDJCA8MPS7 323 aa21.4■■□□□ 1.02
CLSTN3-210ENST00000540931 ERC2O15083 957 aa21.4■■□□□ 1.02
CLSTN3-210ENST00000540931 SPTY2D1Q68D10 685 aaPredicted RBP21.4■■□□□ 1.02
CLSTN3-210ENST00000540931 RSBN1LQ6PCB5 846 aaPredicted RBP21.4■■□□□ 1.02
CLSTN3-210ENST00000540931 OGFOD1Q8N543 542 aa21.4■■□□□ 1.02
CLSTN3-210ENST00000540931 DBNDD2Q9BQY9 259 aa21.4■■□□□ 1.02
CLSTN3-210ENST00000540931 CCDC8Q9H0W5 538 aaPredicted RBP21.4■■□□□ 1.02
CLSTN3-210ENST00000540931 DBNLQ9UJU6 430 aaKnown RBP21.4■■□□□ 1.02
CLSTN3-210ENST00000540931 MAST3O60307 1309 aa21.39■■□□□ 1.01
CLSTN3-210ENST00000540931 SALL1Q9NSC2 1324 aa21.39■■□□□ 1.01
CLSTN3-210ENST00000540931 POTECB2RU33 542 aa21.39■■□□□ 1.01
CLSTN3-210ENST00000540931 RAD17O75943 681 aa21.39■■□□□ 1.01
CLSTN3-210ENST00000540931 GTF2IP78347 998 aa21.39■■□□□ 1.01
CLSTN3-210ENST00000540931 NUCB1Q02818 461 aa21.39■■□□□ 1.01
CLSTN3-210ENST00000540931 HDAC9Q9UKV0 1011 aa21.39■■□□□ 1.01
CLSTN3-210ENST00000540931 PSMD14O00487 310 aa21.38■■□□□ 1.01
CLSTN3-210ENST00000540931 ADORA1P30542 326 aa21.38■■□□□ 1.01
CLSTN3-210ENST00000540931 PHKA1P46020 1223 aa21.38■■□□□ 1.01
CLSTN3-210ENST00000540931 TTF1Q15361 905 aaPredicted RBP21.38■■□□□ 1.01
CLSTN3-210ENST00000540931 CHD1LQ86WJ1 897 aa21.38■■□□□ 1.01
CLSTN3-210ENST00000540931 TNS4Q8IZW8 715 aa21.38■■□□□ 1.01
CLSTN3-210ENST00000540931 ECHDC1Q9NTX5 307 aa21.38■■□□□ 1.01
CLSTN3-210ENST00000540931 GJA3Q9Y6H8 435 aa21.38■■□□□ 1.01
CLSTN3-210ENST00000540931 PSME4Q14997 1843 aa21.37■■□□□ 1.01
CLSTN3-210ENST00000540931 DACT2Q5SW24 774 aa21.37■■□□□ 1.01
CLSTN3-210ENST00000540931 FBXW7Q969H0 707 aa21.37■■□□□ 1.01
CLSTN3-210ENST00000540931 ZNF541Q9H0D2 1346 aa21.36■■□□□ 1.01
CLSTN3-210ENST00000540931 H7C1D1 291 aa21.36■■□□□ 1.01
CLSTN3-210ENST00000540931 ATP5JP18859 108 aa21.36■■□□□ 1.01
CLSTN3-210ENST00000540931 MFSD14BQ5SR56 506 aa21.36■■□□□ 1.01
CLSTN3-210ENST00000540931 SLF2Q8IX21 1173 aa21.36■■□□□ 1.01
CLSTN3-210ENST00000540931 SPATA5Q8NB90 893 aa21.36■■□□□ 1.01
CLSTN3-210ENST00000540931 MRIQ9BWK5 157 aa21.36■■□□□ 1.01
CLSTN3-210ENST00000540931 COL4A5P29400 1685 aa21.36■■□□□ 1.01
CLSTN3-210ENST00000540931 CAPN15O75808 1086 aa21.35■■□□□ 1.01
CLSTN3-210ENST00000540931 DDNO94850 711 aaPredicted RBP21.35■■□□□ 1.01
CLSTN3-210ENST00000540931 PNMA8AQ86V59 439 aaPredicted RBP21.35■■□□□ 1.01
CLSTN3-210ENST00000540931 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP21.35■■□□□ 1.01
CLSTN3-210ENST00000540931 AOX1Q06278 1338 aa21.34■■□□□ 1.01
CLSTN3-210ENST00000540931 GLRX3O76003 335 aaKnown RBP21.34■■□□□ 1.01
CLSTN3-210ENST00000540931 USP17L8P0C7I0 530 aa21.34■■□□□ 1.01
CLSTN3-210ENST00000540931 HSPA1AP0DMV8 641 aaKnown RBP21.34■■□□□ 1.01
CLSTN3-210ENST00000540931 HSPA1BP0DMV9 641 aaKnown RBP21.34■■□□□ 1.01
CLSTN3-210ENST00000540931 MX1P20591 662 aa21.34■■□□□ 1.01
CLSTN3-210ENST00000540931 HDLBPQ00341 1268 aaKnown RBP21.34■■□□□ 1.01
CLSTN3-210ENST00000540931 RASGRF1Q13972 1273 aa21.34■■□□□ 1.01
CLSTN3-210ENST00000540931 LRRFIP1Q32MZ4 808 aaKnown RBP21.34■■□□□ 1.01
CLSTN3-210ENST00000540931 TICAM2Q86XR7 235 aa21.34■■□□□ 1.01
CLSTN3-210ENST00000540931 HACL1Q9UJ83 578 aa21.34■■□□□ 1.01
CLSTN3-210ENST00000540931 SMARCA5O60264 1052 aaPredicted RBP21.33■■□□□ 1.01
CLSTN3-210ENST00000540931 CHAF1AQ13111 956 aaPredicted RBP21.33■■□□□ 1.01
CLSTN3-210ENST00000540931 B4GALNT3Q6L9W6 998 aa21.33■■□□□ 1.01
CLSTN3-210ENST00000540931 GPRC5DQ9NZD1 345 aa21.33■■□□□ 1.01
CLSTN3-210ENST00000540931 SCN4AP35499 1836 aa21.33■■□□□ 1.01
CLSTN3-210ENST00000540931 MYH13Q9UKX3 1938 aa21.33■■□□□ 1
CLSTN3-210ENST00000540931 LDHBP07195 334 aaKnown RBP21.32■■□□□ 1
CLSTN3-210ENST00000540931 GMPSP49915 693 aaPredicted RBP21.32■■□□□ 1
CLSTN3-210ENST00000540931 GMLQ99445 158 aa21.32■■□□□ 1
CLSTN3-210ENST00000540931 ADARB2Q9NS39 739 aaKnown RBP21.32■■□□□ 1
CLSTN3-210ENST00000540931 HMG20BQ9P0W2 317 aa21.32■■□□□ 1
CLSTN3-210ENST00000540931 STAP2Q9UGK3 403 aa21.32■■□□□ 1
CLSTN3-210ENST00000540931 IQSEC3Q9UPP2 1182 aaPredicted RBP21.32■■□□□ 1
CLSTN3-210ENST00000540931 MCAMP43121 646 aa21.31■■□□□ 1
CLSTN3-210ENST00000540931 GSTO1P78417 241 aa21.31■■□□□ 1
CLSTN3-210ENST00000540931 USP50Q70EL3 339 aaPredicted RBP21.31■■□□□ 1
CLSTN3-210ENST00000540931 ERICH6Q7L0X2 663 aa21.31■■□□□ 1
CLSTN3-210ENST00000540931 LNPKQ9C0E8 428 aa21.31■■□□□ 1
CLSTN3-210ENST00000540931 KCNQ5Q9NR82 932 aa21.31■■□□□ 1
CLSTN3-210ENST00000540931 TLR7Q9NYK1 1049 aaKnown RBP21.31■■□□□ 1
CLSTN3-210ENST00000540931 CNOT7Q9UIV1 285 aaKnown RBP21.31■■□□□ 1
CLSTN3-210ENST00000540931 LDHCP07864 332 aa21.3■■□□□ 1
CLSTN3-210ENST00000540931 ZNF280AP59817 542 aaPredicted RBP21.3■■□□□ 1
CLSTN3-210ENST00000540931 HAUS7Q99871 368 aa21.3■■□□□ 1
CLSTN3-210ENST00000540931 OSBPL3Q9H4L5 887 aa21.3■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms