RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 PARP3Q9Y6F1 533 aa10.89□□□□□ -0.67
CLIP1-214ENST00000540539 CD163L1Q9NR16 1453 aa10.89□□□□□ -0.67
CLIP1-214ENST00000540539 PSDA5PKW4 1024 aaPredicted RBP10.89□□□□□ -0.67
CLIP1-214ENST00000540539 TUBB4AP04350 444 aa10.89□□□□□ -0.67
CLIP1-214ENST00000540539 ZSCAN22P10073 491 aaPredicted RBP10.89□□□□□ -0.67
CLIP1-214ENST00000540539 TTC22Q5TAA0 569 aa10.89□□□□□ -0.67
CLIP1-214ENST00000540539 MYSM1Q5VVJ2 828 aa10.89□□□□□ -0.67
CLIP1-214ENST00000540539 SARM1Q6SZW1 724 aa10.89□□□□□ -0.67
CLIP1-214ENST00000540539 RSRC2Q7L4I2 434 aaKnown RBP10.89□□□□□ -0.67
CLIP1-214ENST00000540539 HOMER1Q86YM7 354 aa10.89□□□□□ -0.67
CLIP1-214ENST00000540539 SPDYE1Q8NFV5 336 aaPredicted RBP10.89□□□□□ -0.67
CLIP1-214ENST00000540539 CARD14Q9BXL6 1004 aa10.89□□□□□ -0.67
CLIP1-214ENST00000540539 G3BP2Q9UN86 482 aaKnown RBP10.89□□□□□ -0.67
CLIP1-214ENST00000540539 A0A1W2PP64 1363 aa10.89□□□□□ -0.67
CLIP1-214ENST00000540539 PLEKHG3A1L390 1219 aa10.88□□□□□ -0.67
CLIP1-214ENST00000540539 NAA25Q14CX7 972 aa10.88□□□□□ -0.67
CLIP1-214ENST00000540539 CCDC27Q2M243 656 aa10.88□□□□□ -0.67
CLIP1-214ENST00000540539 PLEKHM2Q8IWE5 1019 aa10.88□□□□□ -0.67
CLIP1-214ENST00000540539 FAM71BQ8TC56 605 aa10.88□□□□□ -0.67
CLIP1-214ENST00000540539 MKL1Q969V6 931 aa10.88□□□□□ -0.67
CLIP1-214ENST00000540539 THUMPD2Q9BTF0 503 aaKnown RBP10.88□□□□□ -0.67
CLIP1-214ENST00000540539 BLOC1S6Q9UL45 172 aa10.88□□□□□ -0.67
CLIP1-214ENST00000540539 RTL1A6NKG5 1358 aa10.88□□□□□ -0.67
CLIP1-214ENST00000540539 IQSEC2Q5JU85 1478 aa10.88□□□□□ -0.67
CLIP1-214ENST00000540539 ENO4A6NNW6 628 aa10.88□□□□□ -0.67
CLIP1-214ENST00000540539 EBAG9O00559 213 aa10.88□□□□□ -0.67
CLIP1-214ENST00000540539 SETSIPP0DME0 302 aa10.88□□□□□ -0.67
CLIP1-214ENST00000540539 PYGBP11216 843 aa10.88□□□□□ -0.67
CLIP1-214ENST00000540539 BEND6Q5SZJ8 279 aaPredicted RBP10.88□□□□□ -0.67
CLIP1-214ENST00000540539 HDXQ7Z353 690 aa10.88□□□□□ -0.67
CLIP1-214ENST00000540539 HDGFL2Q7Z4V5 671 aaPredicted RBP10.88□□□□□ -0.67
CLIP1-214ENST00000540539 MSL3Q8N5Y2 521 aaKnown RBP10.88□□□□□ -0.67
CLIP1-214ENST00000540539 RABGGTAQ92696 567 aa10.88□□□□□ -0.67
CLIP1-214ENST00000540539 DNAJC25Q9H1X3 360 aa10.88□□□□□ -0.67
CLIP1-214ENST00000540539 BIN2Q9UBW5 565 aaPredicted RBP10.88□□□□□ -0.67
CLIP1-214ENST00000540539 TBC1D2BQ9UPU7 963 aa10.88□□□□□ -0.67
CLIP1-214ENST00000540539 MST1RQ04912 1400 aa10.88□□□□□ -0.67
CLIP1-214ENST00000540539 C1orf167Q5SNV9 1468 aa10.88□□□□□ -0.67
CLIP1-214ENST00000540539 CD151P48509 253 aa10.87□□□□□ -0.67
CLIP1-214ENST00000540539 BRD3Q15059 726 aa10.87□□□□□ -0.67
CLIP1-214ENST00000540539 ESCO1Q5FWF5 840 aa10.87□□□□□ -0.67
CLIP1-214ENST00000540539 HHATQ5VTY9 493 aa10.87□□□□□ -0.67
CLIP1-214ENST00000540539 TLDC1Q6P9B6 456 aa10.87□□□□□ -0.67
CLIP1-214ENST00000540539 AMOTL1Q8IY63 956 aa10.87□□□□□ -0.67
CLIP1-214ENST00000540539 SSH1Q8WYL5 1049 aa10.87□□□□□ -0.67
CLIP1-214ENST00000540539 SPDL1Q96EA4 605 aa10.87□□□□□ -0.67
CLIP1-214ENST00000540539 FAM163AQ96GL9 167 aaPredicted RBP10.87□□□□□ -0.67
CLIP1-214ENST00000540539 TMX4Q9H1E5 349 aaPredicted RBP10.87□□□□□ -0.67
CLIP1-214ENST00000540539 NOB1Q9ULX3 412 aaKnown RBP10.87□□□□□ -0.67
CLIP1-214ENST00000540539 IL16Q14005 1332 aa10.87□□□□□ -0.67
CLIP1-214ENST00000540539 NRDCO43847 1150 aa10.87□□□□□ -0.67
CLIP1-214ENST00000540539 HOXD11P31277 338 aaPredicted RBP10.87□□□□□ -0.67
CLIP1-214ENST00000540539 ACTN3Q08043 901 aaPredicted RBP10.87□□□□□ -0.67
CLIP1-214ENST00000540539 AMOTQ4VCS5 1084 aa10.87□□□□□ -0.67
CLIP1-214ENST00000540539 BICD2Q8TD16 824 aa10.87□□□□□ -0.67
CLIP1-214ENST00000540539 MMTAG2Q9BU76 263 aaKnown RBP10.87□□□□□ -0.67
CLIP1-214ENST00000540539 UTP14AQ9BVJ6 771 aaKnown RBP10.87□□□□□ -0.67
CLIP1-214ENST00000540539 PHF8Q9UPP1 1060 aa10.87□□□□□ -0.67
CLIP1-214ENST00000540539 CHMP3Q9Y3E7 222 aa10.87□□□□□ -0.67
CLIP1-214ENST00000540539 ACEP12821 1306 aa10.87□□□□□ -0.67
CLIP1-214ENST00000540539 AKAP12Q02952 1782 aa10.87□□□□□ -0.67
CLIP1-214ENST00000540539 IMPDH2P12268 514 aa10.86□□□□□ -0.67
CLIP1-214ENST00000540539 TRIM65Q6PJ69 517 aa10.86□□□□□ -0.67
CLIP1-214ENST00000540539 NGDNQ8NEJ9 315 aaKnown RBP10.86□□□□□ -0.67
CLIP1-214ENST00000540539 SAAL1Q96ER3 474 aa10.86□□□□□ -0.67
CLIP1-214ENST00000540539 ORAI2Q96SN7 254 aa10.86□□□□□ -0.67
CLIP1-214ENST00000540539 RMI1Q9H9A7 625 aa10.86□□□□□ -0.67
CLIP1-214ENST00000540539 DDX20Q9UHI6 824 aaKnown RBP10.86□□□□□ -0.67
CLIP1-214ENST00000540539 CPSF1Q10570 1443 aaKnown RBP10.86□□□□□ -0.67
CLIP1-214ENST00000540539 NSD3Q9BZ95 1437 aa10.86□□□□□ -0.67
CLIP1-214ENST00000540539 F13A1P00488 732 aa10.86□□□□□ -0.67
CLIP1-214ENST00000540539 DNM1Q05193 864 aaKnown RBP10.86□□□□□ -0.67
CLIP1-214ENST00000540539 PDIA5Q14554 519 aa10.86□□□□□ -0.67
CLIP1-214ENST00000540539 KCNB1Q14721 858 aa10.86□□□□□ -0.67
CLIP1-214ENST00000540539 HSP90B2PQ58FF3 399 aa10.86□□□□□ -0.67
CLIP1-214ENST00000540539 RCSD1Q6JBY9 416 aa10.86□□□□□ -0.67
CLIP1-214ENST00000540539 TTC21BQ7Z4L5 1316 aa10.86□□□□□ -0.67
CLIP1-214ENST00000540539 TCP11L2Q8N4U5 519 aa10.86□□□□□ -0.67
CLIP1-214ENST00000540539 TBC1D5Q92609 795 aa10.86□□□□□ -0.67
CLIP1-214ENST00000540539 CCDC102AQ96A19 550 aa10.86□□□□□ -0.67
CLIP1-214ENST00000540539 ZNF396Q96N95 335 aaPredicted RBP10.86□□□□□ -0.67
CLIP1-214ENST00000540539 TNMDQ9H2S6 317 aa10.86□□□□□ -0.67
CLIP1-214ENST00000540539 SUGCTQ9HAC7 445 aa10.86□□□□□ -0.67
CLIP1-214ENST00000540539 UTP3Q9NQZ2 479 aaKnown RBP eCLIP10.86□□□□□ -0.672e-9■■■■■ 74.8
CLIP1-214ENST00000540539 RGS12O14924 1447 aa10.85□□□□□ -0.67
CLIP1-214ENST00000540539 OATP04181 439 aa10.85□□□□□ -0.67
CLIP1-214ENST00000540539 MAP3K9P80192 1104 aa10.85□□□□□ -0.67
CLIP1-214ENST00000540539 MYLK4Q86YV6 388 aaPredicted RBP10.85□□□□□ -0.67
CLIP1-214ENST00000540539 HNRNPLLQ8WVV9 542 aaKnown RBP10.85□□□□□ -0.67
CLIP1-214ENST00000540539 C1orf115Q9H7X2 142 aa10.85□□□□□ -0.67
CLIP1-214ENST00000540539 MON2Q7Z3U7 1717 aa10.85□□□□□ -0.67
CLIP1-214ENST00000540539 POLR3AO14802 1390 aaPredicted RBP10.85□□□□□ -0.67
CLIP1-214ENST00000540539 CDKL5O76039 1030 aa10.85□□□□□ -0.67
CLIP1-214ENST00000540539 FSBPO95073 299 aa10.85□□□□□ -0.67
CLIP1-214ENST00000540539 RTN3O95197 1032 aaPredicted RBP10.85□□□□□ -0.67
CLIP1-214ENST00000540539 TXLNAP40222 546 aa10.85□□□□□ -0.67
CLIP1-214ENST00000540539 GSDMDP57764 484 aa10.85□□□□□ -0.67
CLIP1-214ENST00000540539 PPP2R3AQ06190 1150 aa10.85□□□□□ -0.67
CLIP1-214ENST00000540539 CEP112Q8N8E3 955 aa10.85□□□□□ -0.67
CLIP1-214ENST00000540539 ACRBPQ8NEB7 543 aa10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms