RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 LONRF2Q1L5Z9 754 aa9.85□□□□□ -0.83
YBX3-208ENST00000540447 RRAGBQ5VZM2 374 aa9.85□□□□□ -0.83
YBX3-208ENST00000540447 PPP1R21Q6ZMI0 780 aa9.85□□□□□ -0.83
YBX3-208ENST00000540447 SDCCAG8Q86SQ7 713 aaPredicted RBP9.85□□□□□ -0.83
YBX3-208ENST00000540447 NECAB1Q8N987 351 aa9.85□□□□□ -0.83
YBX3-208ENST00000540447 ANKRD36BQ8N2N9 1353 aa9.85□□□□□ -0.83
YBX3-208ENST00000540447 BAG2O95816 211 aa9.85□□□□□ -0.83
YBX3-208ENST00000540447 CCHCR1Q8TD31 782 aa9.85□□□□□ -0.83
YBX3-208ENST00000540447 RABGGTAQ92696 567 aa9.85□□□□□ -0.83
YBX3-208ENST00000540447 PLCB1Q9NQ66 1216 aa9.85□□□□□ -0.83
YBX3-208ENST00000540447 ATP2A1O14983 1001 aa9.85□□□□□ -0.83
YBX3-208ENST00000540447 PNMA6AP0CW24 399 aaPredicted RBP9.85□□□□□ -0.83
YBX3-208ENST00000540447 MTMR3Q13615 1198 aa9.85□□□□□ -0.83
YBX3-208ENST00000540447 GRAMD4Q6IC98 578 aa9.85□□□□□ -0.83
YBX3-208ENST00000540447 SPAG5Q96R06 1193 aa9.85□□□□□ -0.83
YBX3-208ENST00000540447 KIF2CQ99661 725 aa9.85□□□□□ -0.83
YBX3-208ENST00000540447 DNAI2Q9GZS0 605 aa9.85□□□□□ -0.83
YBX3-208ENST00000540447 KLHL14Q9P2G3 628 aa9.85□□□□□ -0.83
YBX3-208ENST00000540447 CTDP1Q9Y5B0 961 aaPredicted RBP9.85□□□□□ -0.83
YBX3-208ENST00000540447 TTC39AQ5SRH9 613 aa9.84□□□□□ -0.83
YBX3-208ENST00000540447 FBXO41Q8TF61 875 aa9.84□□□□□ -0.83
YBX3-208ENST00000540447 MGEA5O60502 916 aa9.84□□□□□ -0.83
YBX3-208ENST00000540447 MYL5Q02045 173 aa9.84□□□□□ -0.83
YBX3-208ENST00000540447 FBXO38Q6PIJ6 1188 aa9.84□□□□□ -0.83
YBX3-208ENST00000540447 TMEM51Q9NW97 253 aa9.84□□□□□ -0.83
YBX3-208ENST00000540447 G3BP2Q9UN86 482 aaKnown RBP9.84□□□□□ -0.83
YBX3-208ENST00000540447 ERBB4Q15303 1308 aa9.84□□□□□ -0.83
YBX3-208ENST00000540447 DYTNA2CJ06 578 aa9.84□□□□□ -0.83
YBX3-208ENST00000540447 PRKAR2BP31323 418 aa9.84□□□□□ -0.83
YBX3-208ENST00000540447 RWDD2BP57060 319 aa9.84□□□□□ -0.83
YBX3-208ENST00000540447 IKQ13123 557 aaPredicted RBP9.84□□□□□ -0.83
YBX3-208ENST00000540447 PRPF38AQ8NAV1 312 aaKnown RBP9.84□□□□□ -0.83
YBX3-208ENST00000540447 UIMC1Q96RL1 719 aa9.84□□□□□ -0.83
YBX3-208ENST00000540447 PYM1Q9BRP8 204 aaKnown RBP9.84□□□□□ -0.83
YBX3-208ENST00000540447 RMND1Q9NWS8 449 aa9.84□□□□□ -0.83
YBX3-208ENST00000540447 ZNF711Q9Y462 761 aa9.84□□□□□ -0.83
YBX3-208ENST00000540447 ENO4A6NNW6 628 aa9.84□□□□□ -0.83
YBX3-208ENST00000540447 SKIP12755 728 aa9.84□□□□□ -0.83
YBX3-208ENST00000540447 PHEXP78562 749 aa9.84□□□□□ -0.83
YBX3-208ENST00000540447 SLC30A9Q6PML9 568 aa9.84□□□□□ -0.83
YBX3-208ENST00000540447 RPGRIP1Q96KN7 1286 aa9.84□□□□□ -0.83
YBX3-208ENST00000540447 ETF1P62495 437 aaKnown RBP9.84□□□□□ -0.83
YBX3-208ENST00000540447 TRPC3Q13507 836 aa9.84□□□□□ -0.83
YBX3-208ENST00000540447 SRLQ86TD4 932 aa9.84□□□□□ -0.83
YBX3-208ENST00000540447 MORC2Q9Y6X9 1032 aaPredicted RBP9.84□□□□□ -0.83
YBX3-208ENST00000540447 hCG_2014768A0A024R1R8 64 aa9.83□□□□□ -0.84
YBX3-208ENST00000540447 NCBP1Q09161 790 aaKnown RBP9.83□□□□□ -0.84
YBX3-208ENST00000540447 PPIL4Q8WUA2 492 aaKnown RBP eCLIP9.83□□□□□ -0.84
YBX3-208ENST00000540447 SPG7Q9UQ90 795 aa9.83□□□□□ -0.84
YBX3-208ENST00000540447 RRBP1Q9P2E9 1410 aaKnown RBP9.83□□□□□ -0.84
YBX3-208ENST00000540447 KRT71Q3SY84 523 aa9.83□□□□□ -0.84
YBX3-208ENST00000540447 TTC5Q8N0Z6 440 aa9.83□□□□□ -0.84
YBX3-208ENST00000540447 SSH1Q8WYL5 1049 aa9.83□□□□□ -0.84
YBX3-208ENST00000540447 DONSONQ9NYP3 566 aa9.83□□□□□ -0.84
YBX3-208ENST00000540447 NUB1Q9Y5A7 615 aa9.83□□□□□ -0.84
YBX3-208ENST00000540447 ATICP31939 592 aa9.83□□□□□ -0.84
YBX3-208ENST00000540447 CALCOCO2Q13137 446 aa9.83□□□□□ -0.84
YBX3-208ENST00000540447 CCDC197Q8NCU1 140 aa9.83□□□□□ -0.84
YBX3-208ENST00000540447 NACAP1Q9BZK3 213 aa9.83□□□□□ -0.84
YBX3-208ENST00000540447 AKAP2Q9Y2D5 859 aa9.83□□□□□ -0.84
YBX3-208ENST00000540447 PDE6BP35913 854 aa9.83□□□□□ -0.84
YBX3-208ENST00000540447 FANCCQ00597 558 aa9.83□□□□□ -0.84
YBX3-208ENST00000540447 UBXN1Q04323 297 aa9.83□□□□□ -0.84
YBX3-208ENST00000540447 TRIM58Q8NG06 486 aa9.83□□□□□ -0.84
YBX3-208ENST00000540447 CEP70Q8NHQ1 597 aa9.83□□□□□ -0.84
YBX3-208ENST00000540447 KIF1BPQ96EK5 621 aa9.83□□□□□ -0.84
YBX3-208ENST00000540447 ACTN3Q08043 901 aaPredicted RBP9.83□□□□□ -0.84
YBX3-208ENST00000540447 HIBCHQ6NVY1 386 aaPredicted RBP9.83□□□□□ -0.84
YBX3-208ENST00000540447 PSMD6Q15008 389 aa9.82□□□□□ -0.84
YBX3-208ENST00000540447 ABCF2Q9UG63 623 aa9.82□□□□□ -0.84
YBX3-208ENST00000540447 FAM169AQ9Y6X4 670 aa9.82□□□□□ -0.84
YBX3-208ENST00000540447 CYP26C1Q6V0L0 522 aa9.82□□□□□ -0.84
YBX3-208ENST00000540447 LRRC8AQ8IWT6 810 aa9.82□□□□□ -0.84
YBX3-208ENST00000540447 RMDN2Q96LZ7 410 aa9.82□□□□□ -0.84
YBX3-208ENST00000540447 CLSTN2Q9H4D0 955 aa9.82□□□□□ -0.84
YBX3-208ENST00000540447 ADAM21Q9UKJ8 722 aa9.82□□□□□ -0.84
YBX3-208ENST00000540447 GCFC2P16383 781 aaKnown RBP9.82□□□□□ -0.84
YBX3-208ENST00000540447 CUL3Q13618 768 aa9.82□□□□□ -0.84
YBX3-208ENST00000540447 NAA16Q6N069 864 aaPredicted RBP9.82□□□□□ -0.84
YBX3-208ENST00000540447 UTP11Q9Y3A2 253 aaKnown RBP9.82□□□□□ -0.84
YBX3-208ENST00000540447 TRIM66O15016 1216 aa9.82□□□□□ -0.84
YBX3-208ENST00000540447 ACBD5Q5T8D3 534 aaPredicted RBP9.82□□□□□ -0.84
YBX3-208ENST00000540447 MAP3K21Q5TCX8 1036 aa9.82□□□□□ -0.84
YBX3-208ENST00000540447 TCERG1LQ5VWI1 586 aa9.82□□□□□ -0.84
YBX3-208ENST00000540447 PCDHB15Q9Y5E8 787 aa9.82□□□□□ -0.84
YBX3-208ENST00000540447 CHMP2AO43633 222 aa9.82□□□□□ -0.84
YBX3-208ENST00000540447 IGSF22Q8N9C0 903 aa9.82□□□□□ -0.84
YBX3-208ENST00000540447 NGDNQ8NEJ9 315 aaKnown RBP9.82□□□□□ -0.84
YBX3-208ENST00000540447 GGNBP2Q9H3C7 697 aa9.82□□□□□ -0.84
YBX3-208ENST00000540447 SDSP20132 328 aa9.81□□□□□ -0.84
YBX3-208ENST00000540447 ALDH1L2Q3SY69 923 aa9.81□□□□□ -0.84
YBX3-208ENST00000540447 ANKRD20A3Q5VUR7 823 aa9.81□□□□□ -0.84
YBX3-208ENST00000540447 GOLGA8BA8MQT2 603 aa9.81□□□□□ -0.84
YBX3-208ENST00000540447 TRIM27P14373 513 aa9.81□□□□□ -0.84
YBX3-208ENST00000540447 AFMP43652 599 aa9.81□□□□□ -0.84
YBX3-208ENST00000540447 NUTM2DQ5VT03 806 aaPredicted RBP9.81□□□□□ -0.84
YBX3-208ENST00000540447 NUTM2AQ8IVF1 878 aaPredicted RBP9.81□□□□□ -0.84
YBX3-208ENST00000540447 CNKSR2Q8WXI2 1034 aa9.81□□□□□ -0.84
YBX3-208ENST00000540447 JAKMIP2Q96AA8 810 aa9.81□□□□□ -0.84
YBX3-208ENST00000540447 RASSF10A6NK89 507 aa9.81□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms