RNA–Protein interactions for RNA: ENST00000540304.5

CLIP1-212, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5

Gene CLIP1, Length 2,554 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-212ENST00000540304 LARGE1O95461 756 aa11.47□□□□□ -0.57
CLIP1-212ENST00000540304 HSPD1P10809 573 aaKnown RBP11.47□□□□□ -0.57
CLIP1-212ENST00000540304 PHKA1P46020 1223 aa11.47□□□□□ -0.57
CLIP1-212ENST00000540304 SF3B3Q15393 1217 aaKnown RBP11.47□□□□□ -0.57
CLIP1-212ENST00000540304 ZSCAN25Q6NSZ9 544 aa11.47□□□□□ -0.57
CLIP1-212ENST00000540304 APPBP2Q92624 585 aa11.47□□□□□ -0.57
CLIP1-212ENST00000540304 OSBP2Q969R2 916 aa11.47□□□□□ -0.57
CLIP1-212ENST00000540304 NEK1Q96PY6 1258 aa11.47□□□□□ -0.57
CLIP1-212ENST00000540304 ZPR1O75312 459 aa11.46□□□□□ -0.57
CLIP1-212ENST00000540304 WASHC4Q2M389 1173 aa11.46□□□□□ -0.57
CLIP1-212ENST00000540304 BICDL1Q6ZP65 573 aa11.46□□□□□ -0.57
CLIP1-212ENST00000540304 NYXQ9GZU5 481 aa11.46□□□□□ -0.57
CLIP1-212ENST00000540304 IRX3P78415 501 aaPredicted RBP11.46□□□□□ -0.58
CLIP1-212ENST00000540304 SLC10A5Q5PT55 438 aa11.46□□□□□ -0.58
CLIP1-212ENST00000540304 MCTP1Q6DN14 999 aa11.46□□□□□ -0.58
CLIP1-212ENST00000540304 TCEANC2Q96MN5 208 aa11.46□□□□□ -0.58
CLIP1-212ENST00000540304 SRP68Q9UHB9 627 aaKnown RBP11.46□□□□□ -0.58
CLIP1-212ENST00000540304 TPCN1Q9ULQ1 816 aa11.46□□□□□ -0.58
CLIP1-212ENST00000540304 SMC3Q9UQE7 1217 aa11.46□□□□□ -0.58
CLIP1-212ENST00000540304 MYO5AQ9Y4I1 1855 aaKnown RBP11.45□□□□□ -0.58
CLIP1-212ENST00000540304 WDR33Q9C0J8 1336 aaKnown RBP11.45□□□□□ -0.58
CLIP1-212ENST00000540304 COL4A1P02462 1669 aa11.45□□□□□ -0.58
CLIP1-212ENST00000540304 DOCK2Q92608 1830 aa11.45□□□□□ -0.58
CLIP1-212ENST00000540304 ME3Q16798 604 aa11.45□□□□□ -0.58
CLIP1-212ENST00000540304 PPP4R3CPQ6ZMV5 832 aa11.45□□□□□ -0.58
CLIP1-212ENST00000540304 CCDC83Q8IWF9 413 aa11.45□□□□□ -0.58
CLIP1-212ENST00000540304 SETDB2Q96T68 719 aa11.45□□□□□ -0.58
CLIP1-212ENST00000540304 IGSF3O75054 1194 aa11.45□□□□□ -0.58
CLIP1-212ENST00000540304 HMGB1P09429 215 aaKnown RBP11.45□□□□□ -0.58
CLIP1-212ENST00000540304 CHRNDQ07001 517 aa11.45□□□□□ -0.58
CLIP1-212ENST00000540304 TOB2Q14106 344 aaPredicted RBP11.45□□□□□ -0.58
CLIP1-212ENST00000540304 FOXD4L6Q3SYB3 417 aaPredicted RBP11.45□□□□□ -0.58
CLIP1-212ENST00000540304 FOXD4L3Q6VB84 417 aaPredicted RBP11.45□□□□□ -0.58
CLIP1-212ENST00000540304 ANKRD18AQ8IVF6 992 aa11.45□□□□□ -0.58
CLIP1-212ENST00000540304 ADD2P35612 726 aa11.44□□□□□ -0.58
CLIP1-212ENST00000540304 C3orf67Q6ZVT6 689 aa11.44□□□□□ -0.58
CLIP1-212ENST00000540304 PIH1D3Q9NQM4 214 aaKnown RBP11.44□□□□□ -0.58
CLIP1-212ENST00000540304 ST3GAL1Q11201 340 aa11.44□□□□□ -0.58
CLIP1-212ENST00000540304 STOX1Q6ZVD7 989 aa11.44□□□□□ -0.58
CLIP1-212ENST00000540304 ANP32BQ92688 251 aaKnown RBP11.44□□□□□ -0.58
CLIP1-212ENST00000540304 ARHGEF1Q92888 912 aaKnown RBP11.44□□□□□ -0.58
CLIP1-212ENST00000540304 QTRT2Q9H974 415 aaKnown RBP11.44□□□□□ -0.58
CLIP1-212ENST00000540304 CTNNA3Q9UI47 895 aa11.44□□□□□ -0.58
CLIP1-212ENST00000540304 TAF1P21675 1872 aa11.44□□□□□ -0.58
CLIP1-212ENST00000540304 MYCNP04198 464 aaPredicted RBP11.43□□□□□ -0.58
CLIP1-212ENST00000540304 UBE3CQ15386 1083 aa11.43□□□□□ -0.58
CLIP1-212ENST00000540304 SLC9C2Q5TAH2 1124 aa11.43□□□□□ -0.58
CLIP1-212ENST00000540304 FAM43BQ6ZT52 329 aaPredicted RBP11.43□□□□□ -0.58
CLIP1-212ENST00000540304 NBPF5PQ86XG9 351 aaPredicted RBP11.43□□□□□ -0.58
CLIP1-212ENST00000540304 SPATA5Q8NB90 893 aa11.43□□□□□ -0.58
CLIP1-212ENST00000540304 PUS7LQ9H0K6 701 aaKnown RBP11.43□□□□□ -0.58
CLIP1-212ENST00000540304 BRWD3Q6RI45 1802 aa11.43□□□□□ -0.58
CLIP1-212ENST00000540304 IDH1O75874 414 aaKnown RBP11.43□□□□□ -0.58
CLIP1-212ENST00000540304 AMIGO3Q86WK7 504 aa11.43□□□□□ -0.58
CLIP1-212ENST00000540304 NECAB1Q8N987 351 aa11.43□□□□□ -0.58
CLIP1-212ENST00000540304 BSDC1Q9NW68 430 aaPredicted RBP11.43□□□□□ -0.58
CLIP1-212ENST00000540304 SNAP23O00161 211 aa11.42□□□□□ -0.58
CLIP1-212ENST00000540304 FOXP2O15409 715 aa11.42□□□□□ -0.58
CLIP1-212ENST00000540304 GPAA1O43292 621 aa11.42□□□□□ -0.58
CLIP1-212ENST00000540304 GJB2P29033 226 aa11.42□□□□□ -0.58
CLIP1-212ENST00000540304 RASGRF1Q13972 1273 aa11.42□□□□□ -0.58
CLIP1-212ENST00000540304 KLHL40Q2TBA0 621 aa11.42□□□□□ -0.58
CLIP1-212ENST00000540304 TPTE2Q6XPS3 522 aa11.42□□□□□ -0.58
CLIP1-212ENST00000540304 DHX32Q7L7V1 743 aaKnown RBP11.42□□□□□ -0.58
CLIP1-212ENST00000540304 LMBRD1Q9NUN5 540 aa11.42□□□□□ -0.58
CLIP1-212ENST00000540304 PATL2C9JE40 543 aaKnown RBP11.42□□□□□ -0.58
CLIP1-212ENST00000540304 E7EWF7 191 aa11.42□□□□□ -0.58
CLIP1-212ENST00000540304 STX6O43752 255 aa11.42□□□□□ -0.58
CLIP1-212ENST00000540304 PDE6AP16499 860 aa11.42□□□□□ -0.58
CLIP1-212ENST00000540304 SYT1P21579 422 aa11.42□□□□□ -0.58
CLIP1-212ENST00000540304 RFC4P35249 363 aa11.42□□□□□ -0.58
CLIP1-212ENST00000540304 TRAPPC3LQ5T215 181 aa11.42□□□□□ -0.58
CLIP1-212ENST00000540304 Q6ZUG5 572 aa11.42□□□□□ -0.58
CLIP1-212ENST00000540304 NLRP3Q96P20 1036 aa11.42□□□□□ -0.58
CLIP1-212ENST00000540304 DDX49Q9Y6V7 483 aaKnown RBP11.42□□□□□ -0.58
CLIP1-212ENST00000540304 UBR3Q6ZT12 1888 aa11.42□□□□□ -0.58
CLIP1-212ENST00000540304 GOLGB1Q14789 3259 aaKnown RBP11.42□□□□□ -0.58
CLIP1-212ENST00000540304 FAM193AP78312 1265 aa11.41□□□□□ -0.58
CLIP1-212ENST00000540304 CACNB1Q02641 598 aaPredicted RBP11.41□□□□□ -0.58
CLIP1-212ENST00000540304 IMMTQ16891 758 aaKnown RBP11.41□□□□□ -0.58
CLIP1-212ENST00000540304 FAM196AQ6ZSG2 479 aa11.41□□□□□ -0.58
CLIP1-212ENST00000540304 ZNF532Q9HCE3 1301 aa11.41□□□□□ -0.58
CLIP1-212ENST00000540304 A0A0G2JLW4 131 aa11.41□□□□□ -0.58
CLIP1-212ENST00000540304 PHF14O94880 888 aa11.41□□□□□ -0.58
CLIP1-212ENST00000540304 ZSCAN22P10073 491 aaPredicted RBP11.41□□□□□ -0.58
CLIP1-212ENST00000540304 TTLL5Q6EMB2 1281 aa11.41□□□□□ -0.58
CLIP1-212ENST00000540304 WWC3Q9ULE0 1092 aa11.41□□□□□ -0.58
CLIP1-212ENST00000540304 TCRBV5S4A2TA0A5A2 114 aa11.4□□□□□ -0.58
CLIP1-212ENST00000540304 FGAP02671 866 aa11.4□□□□□ -0.58
CLIP1-212ENST00000540304 TPM2P07951 284 aa11.4□□□□□ -0.58
CLIP1-212ENST00000540304 BCAMP50895 628 aa11.4□□□□□ -0.58
CLIP1-212ENST00000540304 MAP3K12Q12852 859 aa11.4□□□□□ -0.58
CLIP1-212ENST00000540304 UBE4AQ14139 1066 aa11.4□□□□□ -0.58
CLIP1-212ENST00000540304 LRRC4BQ9NT99 713 aa11.4□□□□□ -0.58
CLIP1-212ENST00000540304 CARMIL3Q8ND23 1372 aa11.4□□□□□ -0.58
CLIP1-212ENST00000540304 PRPF40AO75400 957 aaKnown RBP11.4□□□□□ -0.58
CLIP1-212ENST00000540304 EXOSC10Q01780 885 aaKnown RBP11.4□□□□□ -0.58
CLIP1-212ENST00000540304 KRT27Q7Z3Y8 459 aa11.4□□□□□ -0.58
CLIP1-212ENST00000540304 CERS3Q8IU89 383 aa11.4□□□□□ -0.58
CLIP1-212ENST00000540304 CELF1Q92879 486 aaKnown RBP11.4□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms