RNA–Protein interactions for RNA: ENST00000539599.5

UBE3B-210, Transcript of ubiquitin protein ligase E3B, humanhuman

TSL 1 (best)

Gene UBE3B, Length 2,763 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3B-210ENST00000539599 NBPF3Q9H094 633 aa16.49■□□□□ 0.23
UBE3B-210ENST00000539599 SPTLC3Q9NUV7 552 aa16.49■□□□□ 0.23
UBE3B-210ENST00000539599 HPS5Q9UPZ3 1129 aa16.49■□□□□ 0.23
UBE3B-210ENST00000539599 ZNF335Q9H4Z2 1342 aaPredicted RBP16.48■□□□□ 0.23
UBE3B-210ENST00000539599 IDH1O75874 414 aaKnown RBP16.48■□□□□ 0.23
UBE3B-210ENST00000539599 HMGB1P09429 215 aaKnown RBP16.48■□□□□ 0.23
UBE3B-210ENST00000539599 MYRIPQ8NFW9 859 aa16.48■□□□□ 0.23
UBE3B-210ENST00000539599 ATG3Q9NT62 314 aa16.48■□□□□ 0.23
UBE3B-210ENST00000539599 PCDHA7Q9UN72 937 aa16.48■□□□□ 0.23
UBE3B-210ENST00000539599 BIN1O00499 593 aa16.48■□□□□ 0.23
UBE3B-210ENST00000539599 CACTINQ8WUQ7 758 aaKnown RBP16.48■□□□□ 0.23
UBE3B-210ENST00000539599 PIH1D3Q9NQM4 214 aaKnown RBP16.48■□□□□ 0.23
UBE3B-210ENST00000539599 RCOR1Q9UKL0 485 aa16.48■□□□□ 0.23
UBE3B-210ENST00000539599 CIAO1O76071 339 aa16.47■□□□□ 0.23
UBE3B-210ENST00000539599 APPP05067 770 aa16.47■□□□□ 0.23
UBE3B-210ENST00000539599 ATP2B3Q16720 1220 aa16.47■□□□□ 0.23
UBE3B-210ENST00000539599 PLA2G4DQ86XP0 818 aa16.47■□□□□ 0.23
UBE3B-210ENST00000539599 SLAIN2Q9P270 581 aa16.47■□□□□ 0.23
UBE3B-210ENST00000539599 CLIP2Q9UDT6 1046 aa16.47■□□□□ 0.23
UBE3B-210ENST00000539599 ZBTB1Q9Y2K1 713 aa16.47■□□□□ 0.23
UBE3B-210ENST00000539599 RIC1Q4ADV7 1423 aa16.47■□□□□ 0.23
UBE3B-210ENST00000539599 DYNC1I1O14576 645 aa16.47■□□□□ 0.23
UBE3B-210ENST00000539599 IQCB1Q15051 598 aa16.47■□□□□ 0.23
UBE3B-210ENST00000539599 NAA16Q6N069 864 aaPredicted RBP16.47■□□□□ 0.23
UBE3B-210ENST00000539599 KIF6Q6ZMV9 814 aa16.47■□□□□ 0.23
UBE3B-210ENST00000539599 TBC1D10CQ8IV04 446 aa16.47■□□□□ 0.23
UBE3B-210ENST00000539599 TDRD7Q8NHU6 1098 aaKnown RBP16.47■□□□□ 0.23
UBE3B-210ENST00000539599 LLPHQ9BRT6 129 aaKnown RBP16.47■□□□□ 0.23
UBE3B-210ENST00000539599 CARD10Q9BWT7 1032 aa16.47■□□□□ 0.23
UBE3B-210ENST00000539599 CNNM1Q9NRU3 951 aa16.47■□□□□ 0.23
UBE3B-210ENST00000539599 UBR2Q8IWV8 1755 aa16.47■□□□□ 0.23
UBE3B-210ENST00000539599 MYO5AQ9Y4I1 1855 aaKnown RBP16.47■□□□□ 0.23
UBE3B-210ENST00000539599 TOGARAM1Q9Y4F4 1720 aa16.46■□□□□ 0.23
UBE3B-210ENST00000539599 RIOK3O14730 519 aaKnown RBP16.46■□□□□ 0.23
UBE3B-210ENST00000539599 PHKA1P46020 1223 aa16.46■□□□□ 0.23
UBE3B-210ENST00000539599 NDUFA8P51970 172 aa16.46■□□□□ 0.23
UBE3B-210ENST00000539599 NKX1-1Q15270 411 aaPredicted RBP16.46■□□□□ 0.23
UBE3B-210ENST00000539599 IMMTQ16891 758 aaKnown RBP16.46■□□□□ 0.23
UBE3B-210ENST00000539599 SLC9C2Q5TAH2 1124 aa16.46■□□□□ 0.23
UBE3B-210ENST00000539599 MB21D2Q8IYB1 491 aaPredicted RBP16.46■□□□□ 0.23
UBE3B-210ENST00000539599 ZSCAN25Q6NSZ9 544 aa16.46■□□□□ 0.23
UBE3B-210ENST00000539599 CYB5R4Q7L1T6 521 aa16.46■□□□□ 0.23
UBE3B-210ENST00000539599 PHKBQ93100 1093 aa16.46■□□□□ 0.23
UBE3B-210ENST00000539599 ORC3Q9UBD5 711 aaPredicted RBP16.46■□□□□ 0.23
UBE3B-210ENST00000539599 WWC3Q9ULE0 1092 aa16.46■□□□□ 0.23
UBE3B-210ENST00000539599 HMGN5P82970 282 aaKnown RBP16.45■□□□□ 0.22
UBE3B-210ENST00000539599 CCDC73Q6ZRK6 1079 aa16.45■□□□□ 0.22
UBE3B-210ENST00000539599 ENGASEQ8NFI3 743 aa16.45■□□□□ 0.22
UBE3B-210ENST00000539599 TTLL11Q8NHH1 800 aa16.45■□□□□ 0.22
UBE3B-210ENST00000539599 BTG4Q9NY30 223 aa16.45■□□□□ 0.22
UBE3B-210ENST00000539599 USP27XA6NNY8 438 aa16.45■□□□□ 0.22
UBE3B-210ENST00000539599 MARCKSP29966 332 aaPredicted RBP16.45■□□□□ 0.22
UBE3B-210ENST00000539599 FILIP1Q7Z7B0 1213 aa16.45■□□□□ 0.22
UBE3B-210ENST00000539599 NLRP10Q86W26 655 aa16.45■□□□□ 0.22
UBE3B-210ENST00000539599 ZNF274Q96GC6 653 aaPredicted RBP16.45■□□□□ 0.22
UBE3B-210ENST00000539599 C8orf76Q96K31 380 aa16.45■□□□□ 0.22
UBE3B-210ENST00000539599 SHANK3Q9BYB0 1731 aa16.45■□□□□ 0.22
UBE3B-210ENST00000539599 KINO60870 393 aaKnown RBP16.44■□□□□ 0.22
UBE3B-210ENST00000539599 PCCAP05165 728 aaPredicted RBP16.44■□□□□ 0.22
UBE3B-210ENST00000539599 NAA30Q147X3 362 aaPredicted RBP16.44■□□□□ 0.22
UBE3B-210ENST00000539599 PTPN21Q16825 1174 aa16.44■□□□□ 0.22
UBE3B-210ENST00000539599 AOPEPQ8N6M6 819 aa16.44■□□□□ 0.22
UBE3B-210ENST00000539599 ZBTB38Q8NAP3 1195 aaPredicted RBP16.44■□□□□ 0.22
UBE3B-210ENST00000539599 APPBP2Q92624 585 aa16.44■□□□□ 0.22
UBE3B-210ENST00000539599 RIPOR2Q9Y4F9 1068 aa16.44■□□□□ 0.22
UBE3B-210ENST00000539599 DCCP43146 1447 aa16.44■□□□□ 0.22
UBE3B-210ENST00000539599 ZNF213O14771 459 aa16.44■□□□□ 0.22
UBE3B-210ENST00000539599 DHX40Q8IX18 779 aaKnown RBP16.44■□□□□ 0.22
UBE3B-210ENST00000539599 TRMT112Q9UI30 125 aaKnown RBP16.44■□□□□ 0.22
UBE3B-210ENST00000539599 PARP4Q9UKK3 1724 aaKnown RBP16.44■□□□□ 0.22
UBE3B-210ENST00000539599 TNS2Q63HR2 1409 aa16.44■□□□□ 0.22
UBE3B-210ENST00000539599 B4E1Z4 1266 aa16.43■□□□□ 0.22
UBE3B-210ENST00000539599 MICU3Q86XE3 530 aa16.43■□□□□ 0.22
UBE3B-210ENST00000539599 XIRP1Q702N8 1843 aaKnown RBP16.43■□□□□ 0.22
UBE3B-210ENST00000539599 GOLGA6L6A8MZA4 724 aa16.43■□□□□ 0.22
UBE3B-210ENST00000539599 GOLGA6L19H0YKK7 550 aa16.43■□□□□ 0.22
UBE3B-210ENST00000539599 IRS4O14654 1257 aaPredicted RBP16.43■□□□□ 0.22
UBE3B-210ENST00000539599 CSF1RP07333 972 aa16.43■□□□□ 0.22
UBE3B-210ENST00000539599 RALYLQ86SE5 291 aaKnown RBP16.43■□□□□ 0.22
UBE3B-210ENST00000539599 CPLX1O14810 134 aa16.43■□□□□ 0.22
UBE3B-210ENST00000539599 STK38Q15208 465 aa16.43■□□□□ 0.22
UBE3B-210ENST00000539599 SF3A1Q15459 793 aaKnown RBP16.43■□□□□ 0.22
UBE3B-210ENST00000539599 DPCR1Q3MIW9 517 aa16.43■□□□□ 0.22
UBE3B-210ENST00000539599 SDF4Q9BRK5 362 aa16.43■□□□□ 0.22
UBE3B-210ENST00000539599 BCL2L12Q9HB09 334 aa16.43■□□□□ 0.22
UBE3B-210ENST00000539599 PRDM10Q9NQV6 1147 aa16.43■□□□□ 0.22
UBE3B-210ENST00000539599 AKAP2Q9Y2D5 859 aa16.43■□□□□ 0.22
UBE3B-210ENST00000539599 ZNF532Q9HCE3 1301 aa16.42■□□□□ 0.22
UBE3B-210ENST00000539599 MYH15Q9Y2K3 1946 aa16.42■□□□□ 0.22
UBE3B-210ENST00000539599 CDC27P30260 824 aa16.42■□□□□ 0.22
UBE3B-210ENST00000539599 FAM160A1Q05DH4 1040 aa16.42■□□□□ 0.22
UBE3B-210ENST00000539599 TACC3Q9Y6A5 838 aa16.42■□□□□ 0.22
UBE3B-210ENST00000539599 SOS2Q07890 1332 aaPredicted RBP16.42■□□□□ 0.22
UBE3B-210ENST00000539599 MAP3K15Q6ZN16 1313 aa16.42■□□□□ 0.22
UBE3B-210ENST00000539599 BECN2A8MW95 431 aa16.42■□□□□ 0.22
UBE3B-210ENST00000539599 SMIM22K7EJ46 135 aa16.42■□□□□ 0.22
UBE3B-210ENST00000539599 PDIA4P13667 645 aaKnown RBP16.42■□□□□ 0.22
UBE3B-210ENST00000539599 CTDSPL2Q05D32 466 aa16.42■□□□□ 0.22
UBE3B-210ENST00000539599 GIGYF2Q6Y7W6 1299 aaKnown RBP16.42■□□□□ 0.22
UBE3B-210ENST00000539599 CCDC82Q8N4S0 544 aa16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms