RNA–Protein interactions for RNA: ENST00000539506.5

SFSWAP-208, Transcript of splicing factor SWAP, humanhuman

TSL 5

Gene SFSWAP, Length 3,149 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-208ENST00000539506 FKBP4Q02790 459 aaKnown RBP eCLIP14.73□□□□□ -0.05
SFSWAP-208ENST00000539506 ANKRD7Q92527 254 aa14.73□□□□□ -0.05
SFSWAP-208ENST00000539506 TOGARAM1Q9Y4F4 1720 aa14.73□□□□□ -0.05
SFSWAP-208ENST00000539506 FGD1P98174 961 aa14.72□□□□□ -0.05
SFSWAP-208ENST00000539506 TCIRG1Q13488 830 aa14.72□□□□□ -0.05
SFSWAP-208ENST00000539506 HSP90AB3PQ58FF7 597 aa14.72□□□□□ -0.05
SFSWAP-208ENST00000539506 ISM2Q6H9L7 571 aa14.72□□□□□ -0.05
SFSWAP-208ENST00000539506 ATG3Q9NT62 314 aa14.72□□□□□ -0.05
SFSWAP-208ENST00000539506 H3BQV1 296 aa14.72□□□□□ -0.05
SFSWAP-208ENST00000539506 IFFO2Q5TF58 517 aa14.72□□□□□ -0.05
SFSWAP-208ENST00000539506 RBM43Q6ZSC3 357 aaKnown RBP14.72□□□□□ -0.05
SFSWAP-208ENST00000539506 DNAJC10Q8IXB1 793 aa14.72□□□□□ -0.05
SFSWAP-208ENST00000539506 XAGE2Q96GT9 111 aa14.72□□□□□ -0.05
SFSWAP-208ENST00000539506 ZNF215Q9UL58 517 aaPredicted RBP14.72□□□□□ -0.05
SFSWAP-208ENST00000539506 PTPDC1A2A3K4 754 aa14.71□□□□□ -0.05
SFSWAP-208ENST00000539506 GORABQ5T7V8 394 aa14.71□□□□□ -0.05
SFSWAP-208ENST00000539506 ILDR1Q86SU0 546 aaPredicted RBP14.71□□□□□ -0.05
SFSWAP-208ENST00000539506 PIGBQ92521 554 aa14.71□□□□□ -0.05
SFSWAP-208ENST00000539506 SLAIN2Q9P270 581 aa14.71□□□□□ -0.05
SFSWAP-208ENST00000539506 PDIA3P30101 505 aaKnown RBP14.71□□□□□ -0.05
SFSWAP-208ENST00000539506 UTP14CQ5TAP6 766 aaKnown RBP14.71□□□□□ -0.05
SFSWAP-208ENST00000539506 SALL1Q9NSC2 1324 aa14.71□□□□□ -0.06
SFSWAP-208ENST00000539506 HLFQ16534 295 aa14.7□□□□□ -0.06
SFSWAP-208ENST00000539506 CEP135Q66GS9 1140 aa14.7□□□□□ -0.06
SFSWAP-208ENST00000539506 NKX2-3Q8TAU0 364 aa14.7□□□□□ -0.06
SFSWAP-208ENST00000539506 CLSTN2Q9H4D0 955 aa14.7□□□□□ -0.06
SFSWAP-208ENST00000539506 GOLGA6L19H0YKK7 550 aa14.7□□□□□ -0.06
SFSWAP-208ENST00000539506 HAND2P61296 217 aa14.7□□□□□ -0.06
SFSWAP-208ENST00000539506 RAB11FIP4Q86YS3 637 aa14.7□□□□□ -0.06
SFSWAP-208ENST00000539506 CEP126Q9P2H0 1117 aa14.7□□□□□ -0.06
SFSWAP-208ENST00000539506 NWD2Q9ULI1 1742 aa14.7□□□□□ -0.06
SFSWAP-208ENST00000539506 CTIFO43310 598 aaKnown RBP14.7□□□□□ -0.06
SFSWAP-208ENST00000539506 HMGB1P09429 215 aaKnown RBP14.7□□□□□ -0.06
SFSWAP-208ENST00000539506 FDPSP14324 419 aaKnown RBP14.7□□□□□ -0.06
SFSWAP-208ENST00000539506 CCDC57Q2TAC2 916 aa14.7□□□□□ -0.06
SFSWAP-208ENST00000539506 PUS7LQ9H0K6 701 aaKnown RBP14.7□□□□□ -0.06
SFSWAP-208ENST00000539506 CTNNA3Q9UI47 895 aa14.7□□□□□ -0.06
SFSWAP-208ENST00000539506 VGLL3A8MV65 326 aa14.69□□□□□ -0.06
SFSWAP-208ENST00000539506 ZAP70P43403 619 aa14.69□□□□□ -0.06
SFSWAP-208ENST00000539506 ELF2Q15723 593 aa14.69□□□□□ -0.06
SFSWAP-208ENST00000539506 LLPHQ9BRT6 129 aaKnown RBP14.69□□□□□ -0.06
SFSWAP-208ENST00000539506 GTPBP4Q9BZE4 634 aaKnown RBP14.69□□□□□ -0.06
SFSWAP-208ENST00000539506 BIN1O00499 593 aa14.69□□□□□ -0.06
SFSWAP-208ENST00000539506 CSF1RP07333 972 aa14.69□□□□□ -0.06
SFSWAP-208ENST00000539506 SKILP12757 684 aa14.69□□□□□ -0.06
SFSWAP-208ENST00000539506 LRRN4CLQ8ND94 238 aa14.69□□□□□ -0.06
SFSWAP-208ENST00000539506 SLC4A9Q96Q91 983 aa14.69□□□□□ -0.06
SFSWAP-208ENST00000539506 GOLPH3LQ9H4A5 285 aa14.69□□□□□ -0.06
SFSWAP-208ENST00000539506 BECN2A8MW95 431 aa14.68□□□□□ -0.06
SFSWAP-208ENST00000539506 TMOD3Q9NYL9 352 aa14.68□□□□□ -0.06
SFSWAP-208ENST00000539506 OTUD7BQ6GQQ9 843 aa14.68□□□□□ -0.06
SFSWAP-208ENST00000539506 PPIL4Q8WUA2 492 aaKnown RBP eCLIP14.68□□□□□ -0.06
SFSWAP-208ENST00000539506 USP28Q96RU2 1077 aa14.68□□□□□ -0.06
SFSWAP-208ENST00000539506 TMX1Q9H3N1 280 aa14.68□□□□□ -0.06
SFSWAP-208ENST00000539506 ZSCAN16Q9H4T2 348 aaPredicted RBP14.68□□□□□ -0.06
SFSWAP-208ENST00000539506 DENND2AQ9ULE3 1009 aa14.68□□□□□ -0.06
SFSWAP-208ENST00000539506 FGAP02671 866 aa14.68□□□□□ -0.06
SFSWAP-208ENST00000539506 GPTP24298 496 aa14.68□□□□□ -0.06
SFSWAP-208ENST00000539506 TRIM28Q13263 835 aaKnown RBP14.68□□□□□ -0.06
SFSWAP-208ENST00000539506 DDX19AQ9NUU7 478 aaKnown RBP14.68□□□□□ -0.06
SFSWAP-208ENST00000539506 PCCAP05165 728 aaPredicted RBP14.67□□□□□ -0.06
SFSWAP-208ENST00000539506 EVA1CP58658 441 aa14.67□□□□□ -0.06
SFSWAP-208ENST00000539506 KMT5BQ4FZB7 885 aa14.67□□□□□ -0.06
SFSWAP-208ENST00000539506 TTC39AQ5SRH9 613 aa14.67□□□□□ -0.06
SFSWAP-208ENST00000539506 NAA16Q6N069 864 aaPredicted RBP14.67□□□□□ -0.06
SFSWAP-208ENST00000539506 RIC1Q4ADV7 1423 aa14.67□□□□□ -0.06
SFSWAP-208ENST00000539506 ZNF335Q9H4Z2 1342 aaPredicted RBP14.67□□□□□ -0.06
SFSWAP-208ENST00000539506 SMTNL1A8MU46 457 aa14.67□□□□□ -0.06
SFSWAP-208ENST00000539506 PLA2G4DQ86XP0 818 aa14.67□□□□□ -0.06
SFSWAP-208ENST00000539506 ZBTB38Q8NAP3 1195 aaPredicted RBP14.67□□□□□ -0.06
SFSWAP-208ENST00000539506 GREM2Q9H772 168 aa14.67□□□□□ -0.06
SFSWAP-208ENST00000539506 ABCA3Q99758 1704 aa14.67□□□□□ -0.06
SFSWAP-208ENST00000539506 SNW1Q13573 536 aaKnown RBP14.66□□□□□ -0.06
SFSWAP-208ENST00000539506 WASHC4Q2M389 1173 aa14.66□□□□□ -0.06
SFSWAP-208ENST00000539506 CCDC158Q5M9N0 1113 aa14.66□□□□□ -0.06
SFSWAP-208ENST00000539506 LRRC8AQ8IWT6 810 aa14.66□□□□□ -0.06
SFSWAP-208ENST00000539506 RCOR1Q9UKL0 485 aa14.66□□□□□ -0.06
SFSWAP-208ENST00000539506 RIPOR2Q9Y4F9 1068 aa14.66□□□□□ -0.06
SFSWAP-208ENST00000539506 CCDC69A6NI79 296 aa14.66□□□□□ -0.06
SFSWAP-208ENST00000539506 ANTXR2P58335 489 aa14.66□□□□□ -0.06
SFSWAP-208ENST00000539506 PTPN14Q15678 1187 aa14.66□□□□□ -0.06
SFSWAP-208ENST00000539506 CCAR1Q8IX12 1150 aaKnown RBP14.66□□□□□ -0.06
SFSWAP-208ENST00000539506 ZNF274Q96GC6 653 aaPredicted RBP14.66□□□□□ -0.06
SFSWAP-208ENST00000539506 PLA2G12BQ9BX93 195 aa14.66□□□□□ -0.06
SFSWAP-208ENST00000539506 GJB4Q9NTQ9 266 aa14.66□□□□□ -0.06
SFSWAP-208ENST00000539506 OGFRQ9NZT2 677 aa14.66□□□□□ -0.06
SFSWAP-208ENST00000539506 TPM3P06753 285 aa14.66□□□□□ -0.06
SFSWAP-208ENST00000539506 MCAMP43121 646 aa14.66□□□□□ -0.06
SFSWAP-208ENST00000539506 NBPF3Q9H094 633 aa14.66□□□□□ -0.06
SFSWAP-208ENST00000539506 HPS5Q9UPZ3 1129 aa14.66□□□□□ -0.06
SFSWAP-208ENST00000539506 EVCP57679 992 aa14.65□□□□□ -0.06
SFSWAP-208ENST00000539506 AOPEPQ8N6M6 819 aa14.65□□□□□ -0.06
SFSWAP-208ENST00000539506 TTLL11Q8NHH1 800 aa14.65□□□□□ -0.06
SFSWAP-208ENST00000539506 CFAP45Q9UL16 551 aa14.65□□□□□ -0.06
SFSWAP-208ENST00000539506 CARMIL3Q8ND23 1372 aa14.65□□□□□ -0.06
SFSWAP-208ENST00000539506 GOLGA8FQ08AF8 430 aa14.65□□□□□ -0.06
SFSWAP-208ENST00000539506 GOLGA8DPQ0D2H9 430 aa14.65□□□□□ -0.06
SFSWAP-208ENST00000539506 IFIT5Q13325 482 aaKnown RBP14.65□□□□□ -0.06
SFSWAP-208ENST00000539506 TICAM2Q86XR7 235 aa14.65□□□□□ -0.06
SFSWAP-208ENST00000539506 FAM177A1Q8N128 213 aaPredicted RBP14.65□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 62.4 ms