RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 C7orf61Q8IZ16 206 aa12.03□□□□□ -0.48
USP28-205ENST00000537706 CSADQ9Y600 493 aa12.03□□□□□ -0.48
USP28-205ENST00000537706 TAF1P21675 1872 aa12.03□□□□□ -0.48
USP28-205ENST00000537706 FAM43AQ8N2R8 423 aa12.02□□□□□ -0.49
USP28-205ENST00000537706 MXD3Q9BW11 206 aa12.02□□□□□ -0.49
USP28-205ENST00000537706 CEP290O15078 2479 aa12.02□□□□□ -0.49
USP28-205ENST00000537706 FAM205AQ6ZU69 1335 aa12.02□□□□□ -0.49
USP28-205ENST00000537706 MED23Q9ULK4 1368 aa12.02□□□□□ -0.49
USP28-205ENST00000537706 TTLL5Q6EMB2 1281 aa12.01□□□□□ -0.49
USP28-205ENST00000537706 ZBED3Q96IU2 234 aaPredicted RBP12.01□□□□□ -0.49
USP28-205ENST00000537706 VEZTQ9HBM0 779 aa12.01□□□□□ -0.49
USP28-205ENST00000537706 ZMYND8Q9ULU4 1186 aaPredicted RBP12.01□□□□□ -0.49
USP28-205ENST00000537706 HSPA5P11021 654 aaKnown RBP12.01□□□□□ -0.49
USP28-205ENST00000537706 OSBPP22059 807 aa12.01□□□□□ -0.49
USP28-205ENST00000537706 TNFAIP1Q13829 316 aa12.01□□□□□ -0.49
USP28-205ENST00000537706 PDIA6Q15084 440 aa12.01□□□□□ -0.49
USP28-205ENST00000537706 NBPF12Q5TAG4 269 aaPredicted RBP12.01□□□□□ -0.49
USP28-205ENST00000537706 LRP10Q7Z4F1 713 aa12.01□□□□□ -0.49
USP28-205ENST00000537706 ANXA1P04083 346 aa12□□□□□ -0.49
USP28-205ENST00000537706 ZNF697Q5TEC3 545 aa12□□□□□ -0.49
USP28-205ENST00000537706 UNC93B1Q9H1C4 597 aa12□□□□□ -0.49
USP28-205ENST00000537706 SEC31BQ9NQW1 1179 aa12□□□□□ -0.49
USP28-205ENST00000537706 TSPYL4Q9UJ04 414 aa12□□□□□ -0.49
USP28-205ENST00000537706 TIMELESSQ9UNS1 1208 aa12□□□□□ -0.49
USP28-205ENST00000537706 LAMB1P07942 1786 aa12□□□□□ -0.49
USP28-205ENST00000537706 TNFRSF10AO00220 468 aa11.99□□□□□ -0.49
USP28-205ENST00000537706 ECM2O94769 699 aaPredicted RBP11.99□□□□□ -0.49
USP28-205ENST00000537706 MAGEA10P43363 369 aaPredicted RBP11.99□□□□□ -0.49
USP28-205ENST00000537706 MAP3K9P80192 1104 aa11.99□□□□□ -0.49
USP28-205ENST00000537706 PROSER3Q2NL68 480 aa11.99□□□□□ -0.49
USP28-205ENST00000537706 RTL5Q5HYW3 569 aaPredicted RBP11.99□□□□□ -0.49
USP28-205ENST00000537706 MTMR14Q8NCE2 650 aa11.99□□□□□ -0.49
USP28-205ENST00000537706 PSME4Q14997 1843 aa11.99□□□□□ -0.49
USP28-205ENST00000537706 SSC5DA1L4H1 1573 aa11.99□□□□□ -0.49
USP28-205ENST00000537706 FCGRTP55899 365 aa11.99□□□□□ -0.49
USP28-205ENST00000537706 SNAPC2Q13487 334 aa11.99□□□□□ -0.49
USP28-205ENST00000537706 PLBD2Q8NHP8 589 aa11.99□□□□□ -0.49
USP28-205ENST00000537706 MAFAQ8NHW3 353 aaPredicted RBP11.99□□□□□ -0.49
USP28-205ENST00000537706 ZNF428Q96B54 188 aa11.99□□□□□ -0.49
USP28-205ENST00000537706 PAWRQ96IZ0 340 aaKnown RBP11.99□□□□□ -0.49
USP28-205ENST00000537706 GUCD1Q96NT3 240 aa11.99□□□□□ -0.49
USP28-205ENST00000537706 CDC5LQ99459 802 aaKnown RBP11.99□□□□□ -0.49
USP28-205ENST00000537706 TMEM265A0A087WTH1 108 aa11.98□□□□□ -0.49
USP28-205ENST00000537706 CLRN2A0PK11 232 aa11.98□□□□□ -0.49
USP28-205ENST00000537706 ISCA1Q9BUE6 129 aa11.98□□□□□ -0.49
USP28-205ENST00000537706 RASA3Q14644 834 aa11.98□□□□□ -0.49
USP28-205ENST00000537706 ANKLE1Q8NAG6 615 aa11.98□□□□□ -0.49
USP28-205ENST00000537706 DEFB118Q96PH6 123 aa11.98□□□□□ -0.49
USP28-205ENST00000537706 CPA4Q9UI42 421 aa11.98□□□□□ -0.49
USP28-205ENST00000537706 BTBD19C9JJ37 291 aa11.97□□□□□ -0.49
USP28-205ENST00000537706 ATP5J2-PTCD1G3V325 749 aa11.97□□□□□ -0.49
USP28-205ENST00000537706 GTF2IP78347 998 aa11.97□□□□□ -0.49
USP28-205ENST00000537706 C17orf99Q6UX52 265 aa11.97□□□□□ -0.49
USP28-205ENST00000537706 ADGRA2Q96PE1 1338 aa11.96□□□□□ -0.49
USP28-205ENST00000537706 MKI67P46013 3256 aaKnown RBP11.96□□□□□ -0.49
USP28-205ENST00000537706 ADCY3O60266 1144 aa11.96□□□□□ -0.49
USP28-205ENST00000537706 PDE8AO60658 829 aa11.96□□□□□ -0.49
USP28-205ENST00000537706 SYN1P17600 705 aa11.96□□□□□ -0.49
USP28-205ENST00000537706 HOXD11P31277 338 aaPredicted RBP11.96□□□□□ -0.49
USP28-205ENST00000537706 RBM5P52756 815 aaKnown RBP eCLIP11.96□□□□□ -0.49
USP28-205ENST00000537706 CNGB1Q14028 1251 aaPredicted RBP11.96□□□□□ -0.49
USP28-205ENST00000537706 VGLL4Q14135 290 aa11.96□□□□□ -0.49
USP28-205ENST00000537706 CFAP100Q494V2 611 aa11.96□□□□□ -0.49
USP28-205ENST00000537706 ZBTB38Q8NAP3 1195 aaPredicted RBP11.96□□□□□ -0.49
USP28-205ENST00000537706 FAM161BQ96MY7 647 aa11.96□□□□□ -0.49
USP28-205ENST00000537706 LEMD3Q9Y2U8 911 aa11.96□□□□□ -0.49
USP28-205ENST00000537706 POTEB2H3BUK9 544 aa11.96□□□□□ -0.5
USP28-205ENST00000537706 TNNI2P48788 182 aa11.96□□□□□ -0.5
USP28-205ENST00000537706 CCT4P50991 539 aaKnown RBP11.96□□□□□ -0.5
USP28-205ENST00000537706 PRKCZQ05513 592 aa11.96□□□□□ -0.5
USP28-205ENST00000537706 SPDYE2BA6NHP3 402 aa11.95□□□□□ -0.5
USP28-205ENST00000537706 SPDYE5A6NIY4 337 aa11.95□□□□□ -0.5
USP28-205ENST00000537706 SPDYE6P0CI01 402 aa11.95□□□□□ -0.5
USP28-205ENST00000537706 TRIM28Q13263 835 aaKnown RBP11.95□□□□□ -0.5
USP28-205ENST00000537706 TJAP1Q5JTD0 557 aa11.95□□□□□ -0.5
USP28-205ENST00000537706 PPP1R3FQ6ZSY5 799 aaPredicted RBP11.95□□□□□ -0.5
USP28-205ENST00000537706 ERO1BQ86YB8 467 aa11.95□□□□□ -0.5
USP28-205ENST00000537706 CNKSR2Q8WXI2 1034 aa11.95□□□□□ -0.5
USP28-205ENST00000537706 NBPF3Q9H094 633 aa11.95□□□□□ -0.5
USP28-205ENST00000537706 INHAP05111 366 aa11.94□□□□□ -0.5
USP28-205ENST00000537706 PXYLP1Q8TE99 480 aa11.94□□□□□ -0.5
USP28-205ENST00000537706 BABAM1Q9NWV8 329 aa11.94□□□□□ -0.5
USP28-205ENST00000537706 ANKRD23Q86SG2 305 aa11.94□□□□□ -0.5
USP28-205ENST00000537706 HOOK2Q96ED9 719 aa11.94□□□□□ -0.5
USP28-205ENST00000537706 CRISPLD2Q9H0B8 497 aa11.94□□□□□ -0.5
USP28-205ENST00000537706 C11orf49Q9H6J7 331 aa11.94□□□□□ -0.5
USP28-205ENST00000537706 BSDC1Q9NW68 430 aaPredicted RBP11.94□□□□□ -0.5
USP28-205ENST00000537706 RAPGEFL1Q9UHV5 662 aa11.94□□□□□ -0.5
USP28-205ENST00000537706 SZT2Q5T011 3432 aa11.93□□□□□ -0.5
USP28-205ENST00000537706 F8W031 263 aaPredicted RBP11.93□□□□□ -0.5
USP28-205ENST00000537706 KCNJ4P48050 445 aa11.93□□□□□ -0.5
USP28-205ENST00000537706 PPIL2Q13356 520 aa11.93□□□□□ -0.5
USP28-205ENST00000537706 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.93□□□□□ -0.5
USP28-205ENST00000537706 CCDC85AQ96PX6 553 aaPredicted RBP11.93□□□□□ -0.5
USP28-205ENST00000537706 PARK7Q99497 189 aaKnown RBP11.93□□□□□ -0.5
USP28-205ENST00000537706 CDX2Q99626 313 aaPredicted RBP11.93□□□□□ -0.5
USP28-205ENST00000537706 LBHD1Q9BQE6 289 aaPredicted RBP11.92□□□□□ -0.5
USP28-205ENST00000537706 ANKRD2Q9GZV1 360 aa11.92□□□□□ -0.5
USP28-205ENST00000537706 PNNQ9H307 717 aaKnown RBP11.92□□□□□ -0.5
USP28-205ENST00000537706 PAK6Q9NQU5 681 aaPredicted RBP11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms