RNA–Protein interactions for RNA: ENST00000536218.5

LIG1-203, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,179 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-203ENST00000536218 ISCA1Q9BUE6 129 aa16.28■□□□□ 0.2
LIG1-203ENST00000536218 LIMCH1Q9UPQ0 1083 aa16.28■□□□□ 0.2
LIG1-203ENST00000536218 GPS2Q13227 327 aa16.28■□□□□ 0.2
LIG1-203ENST00000536218 MAP3K11Q16584 847 aa16.28■□□□□ 0.2
LIG1-203ENST00000536218 CCDC83Q8IWF9 413 aa16.28■□□□□ 0.2
LIG1-203ENST00000536218 MAP4K1Q92918 833 aa16.28■□□□□ 0.2
LIG1-203ENST00000536218 MYCBPQ99417 103 aaPredicted RBP16.28■□□□□ 0.2
LIG1-203ENST00000536218 STX6O43752 255 aa16.27■□□□□ 0.2
LIG1-203ENST00000536218 ARHGAP29Q52LW3 1261 aa16.27■□□□□ 0.2
LIG1-203ENST00000536218 FILIP1Q7Z7B0 1213 aa16.27■□□□□ 0.2
LIG1-203ENST00000536218 SNRKQ9NRH2 765 aa16.27■□□□□ 0.2
LIG1-203ENST00000536218 ARFGEF2Q9Y6D5 1785 aa16.27■□□□□ 0.2
LIG1-203ENST00000536218 GLI3P10071 1580 aa16.27■□□□□ 0.2
LIG1-203ENST00000536218 SLC27A2O14975 620 aa16.27■□□□□ 0.19
LIG1-203ENST00000536218 SKILP12757 684 aa16.27■□□□□ 0.19
LIG1-203ENST00000536218 IL15P40933 162 aaPredicted RBP16.27■□□□□ 0.19
LIG1-203ENST00000536218 CEP126Q9P2H0 1117 aa16.27■□□□□ 0.19
LIG1-203ENST00000536218 MRVI1Q9Y6F6 885 aa16.27■□□□□ 0.19
LIG1-203ENST00000536218 A0A1B0GUL7 405 aa16.26■□□□□ 0.19
LIG1-203ENST00000536218 CLGNO14967 610 aa16.26■□□□□ 0.19
LIG1-203ENST00000536218 SYT1P21579 422 aa16.26■□□□□ 0.19
LIG1-203ENST00000536218 NECAB1Q8N987 351 aa16.26■□□□□ 0.19
LIG1-203ENST00000536218 MMP14P50281 582 aa16.26■□□□□ 0.19
LIG1-203ENST00000536218 TMCO3Q6UWJ1 677 aa16.26■□□□□ 0.19
LIG1-203ENST00000536218 GOLGA6L1Q8N7Z2 621 aa16.26■□□□□ 0.19
LIG1-203ENST00000536218 LRRN4CLQ8ND94 238 aa16.26■□□□□ 0.19
LIG1-203ENST00000536218 NUP62CLQ9H1M0 184 aa16.26■□□□□ 0.19
LIG1-203ENST00000536218 CWC15Q9P013 229 aaKnown RBP16.26■□□□□ 0.19
LIG1-203ENST00000536218 FKBP4Q02790 459 aaKnown RBP eCLIP16.26■□□□□ 0.19
LIG1-203ENST00000536218 ATP6V1DQ9Y5K8 247 aa16.26■□□□□ 0.19
LIG1-203ENST00000536218 TNS2Q63HR2 1409 aa16.25■□□□□ 0.19
LIG1-203ENST00000536218 F13A1P00488 732 aa16.25■□□□□ 0.19
LIG1-203ENST00000536218 CYP19A1P11511 503 aaPredicted RBP16.25■□□□□ 0.19
LIG1-203ENST00000536218 SART3Q15020 963 aaKnown RBP16.25■□□□□ 0.19
LIG1-203ENST00000536218 CTR9Q6PD62 1173 aa16.25■□□□□ 0.19
LIG1-203ENST00000536218 DDB1Q16531 1140 aa16.25■□□□□ 0.19
LIG1-203ENST00000536218 ABCA3Q99758 1704 aa16.25■□□□□ 0.19
LIG1-203ENST00000536218 HAUS7Q99871 368 aa16.25■□□□□ 0.19
LIG1-203ENST00000536218 RPAP1Q9BWH6 1393 aaPredicted RBP16.25■□□□□ 0.19
LIG1-203ENST00000536218 VPS37CA5D8V6 355 aaPredicted RBP16.24■□□□□ 0.19
LIG1-203ENST00000536218 TAF5LO75529 589 aa16.24■□□□□ 0.19
LIG1-203ENST00000536218 IFIT1P09914 478 aaKnown RBP16.24■□□□□ 0.19
LIG1-203ENST00000536218 MUM1L1Q5H9M0 696 aa16.24■□□□□ 0.19
LIG1-203ENST00000536218 GIGYF2Q6Y7W6 1299 aaKnown RBP16.24■□□□□ 0.19
LIG1-203ENST00000536218 IL17RAQ96F46 866 aa16.24■□□□□ 0.19
LIG1-203ENST00000536218 TRMT112Q9UI30 125 aaKnown RBP16.24■□□□□ 0.19
LIG1-203ENST00000536218 SMC3Q9UQE7 1217 aa16.24■□□□□ 0.19
LIG1-203ENST00000536218 MAP3K15Q6ZN16 1313 aa16.24■□□□□ 0.19
LIG1-203ENST00000536218 IFIT5Q13325 482 aaKnown RBP16.24■□□□□ 0.19
LIG1-203ENST00000536218 NCAPGQ9BPX3 1015 aa16.24■□□□□ 0.19
LIG1-203ENST00000536218 TNMDQ9H2S6 317 aa16.24■□□□□ 0.19
LIG1-203ENST00000536218 ZSWIM6Q9HCJ5 1215 aa16.24■□□□□ 0.19
LIG1-203ENST00000536218 SEC31AO94979 1220 aaKnown RBP16.24■□□□□ 0.19
LIG1-203ENST00000536218 ADORA1P30542 326 aa16.24■□□□□ 0.19
LIG1-203ENST00000536218 LMAN1P49257 510 aa16.24■□□□□ 0.19
LIG1-203ENST00000536218 RNF20Q5VTR2 975 aa16.24■□□□□ 0.19
LIG1-203ENST00000536218 LRRC8AQ8IWT6 810 aa16.24■□□□□ 0.19
LIG1-203ENST00000536218 PAG1Q9NWQ8 432 aa16.24■□□□□ 0.19
LIG1-203ENST00000536218 RRP15Q9Y3B9 282 aaKnown RBP16.24■□□□□ 0.19
LIG1-203ENST00000536218 JRKLQ9Y4A0 524 aa16.24■□□□□ 0.19
LIG1-203ENST00000536218 H2AFXP16104 143 aaPredicted RBP16.23■□□□□ 0.19
LIG1-203ENST00000536218 CCDC34Q96HJ3 373 aa16.23■□□□□ 0.19
LIG1-203ENST00000536218 STK3Q13188 491 aa16.23■□□□□ 0.19
LIG1-203ENST00000536218 BLOC1S2Q6QNY1 142 aa16.23■□□□□ 0.19
LIG1-203ENST00000536218 DZIP3Q86Y13 1208 aaKnown RBP16.23■□□□□ 0.19
LIG1-203ENST00000536218 ZBTB38Q8NAP3 1195 aaPredicted RBP16.23■□□□□ 0.19
LIG1-203ENST00000536218 NHSL1Q5SYE7 1610 aa16.23■□□□□ 0.19
LIG1-203ENST00000536218 COL15A1P39059 1388 aa16.22■□□□□ 0.19
LIG1-203ENST00000536218 GOLGA6L4A6NEF3 574 aa16.22■□□□□ 0.19
LIG1-203ENST00000536218 PCCAP05165 728 aaPredicted RBP16.22■□□□□ 0.19
LIG1-203ENST00000536218 NLRP10Q86W26 655 aa16.22■□□□□ 0.19
LIG1-203ENST00000536218 PLA2G4DQ86XP0 818 aa16.22■□□□□ 0.19
LIG1-203ENST00000536218 DNAJC25Q9H1X3 360 aa16.22■□□□□ 0.19
LIG1-203ENST00000536218 ARGLU1Q9NWB6 273 aaPredicted RBP16.22■□□□□ 0.19
LIG1-203ENST00000536218 LIG1P18858 919 aa16.22■□□□□ 0.19
LIG1-203ENST00000536218 OAS2P29728 719 aaKnown RBP16.22■□□□□ 0.19
LIG1-203ENST00000536218 ZNF165P49910 485 aa16.22■□□□□ 0.19
LIG1-203ENST00000536218 E2F4Q16254 413 aa16.22■□□□□ 0.19
LIG1-203ENST00000536218 ME3Q16798 604 aa16.22■□□□□ 0.19
LIG1-203ENST00000536218 VPS53Q5VIR6 699 aa16.22■□□□□ 0.19
LIG1-203ENST00000536218 KBTBD3Q8NAB2 608 aa16.22■□□□□ 0.19
LIG1-203ENST00000536218 BANK1Q8NDB2 785 aa16.22■□□□□ 0.19
LIG1-203ENST00000536218 MCMDC2Q4G0Z9 681 aa16.22■□□□□ 0.19
LIG1-203ENST00000536218 LDHAL6AQ6ZMR3 332 aa16.22■□□□□ 0.19
LIG1-203ENST00000536218 NYAP1Q6ZVC0 841 aa16.22■□□□□ 0.19
LIG1-203ENST00000536218 GREM2Q9H772 168 aa16.22■□□□□ 0.19
LIG1-203ENST00000536218 SHANK3Q9BYB0 1731 aa16.21■□□□□ 0.19
LIG1-203ENST00000536218 BCL9O00512 1426 aa16.21■□□□□ 0.19
LIG1-203ENST00000536218 KCNG1Q9UIX4 513 aa16.21■□□□□ 0.19
LIG1-203ENST00000536218 TPCN1Q9ULQ1 816 aa16.21■□□□□ 0.19
LIG1-203ENST00000536218 LAMB4A4D0S4 1761 aa16.21■□□□□ 0.19
LIG1-203ENST00000536218 TOGARAM1Q9Y4F4 1720 aa16.21■□□□□ 0.19
LIG1-203ENST00000536218 TCHHQ07283 1943 aa16.21■□□□□ 0.19
LIG1-203ENST00000536218 GUCY2CP25092 1073 aa16.21■□□□□ 0.19
LIG1-203ENST00000536218 PSMA5P28066 241 aa16.21■□□□□ 0.19
LIG1-203ENST00000536218 ATP6V1AP38606 617 aa16.21■□□□□ 0.19
LIG1-203ENST00000536218 TTC31Q49AM3 519 aaPredicted RBP16.21■□□□□ 0.19
LIG1-203ENST00000536218 SRLQ86TD4 932 aa16.21■□□□□ 0.19
LIG1-203ENST00000536218 LRRC2Q9BYS8 371 aa16.21■□□□□ 0.19
LIG1-203ENST00000536218 CCDC69A6NI79 296 aa16.2■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 8 ms