RNA–Protein interactions for RNA: ENST00000533897.1

CTSC-208, Transcript of cathepsin C, human

TSL 2

Gene CTSC, Length 4,344 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CTSC-208	ENST00000533897	SNRPA1	P09661	255 aa	Known RBP	5.2	□□□□□ -1.58
CTSC-208	ENST00000533897	MDM2	Q00987	491 aa	Predicted RBP	5.2	□□□□□ -1.58
CTSC-208	ENST00000533897	PTPA	Q15257	358 aa		5.2	□□□□□ -1.58
CTSC-208	ENST00000533897	C1orf141	Q5JVX7	400 aa		5.2	□□□□□ -1.58
CTSC-208	ENST00000533897	E4F1	Q66K89	784 aa	Predicted RBP	5.2	□□□□□ -1.58
CTSC-208	ENST00000533897	ANKLE2	Q86XL3	938 aa		5.2	□□□□□ -1.58
CTSC-208	ENST00000533897	DDX11	Q96FC9	970 aa		5.2	□□□□□ -1.58
CTSC-208	ENST00000533897	TUBE1	Q9UJT0	475 aa		5.2	□□□□□ -1.58
CTSC-208	ENST00000533897	ZMYM6	O95789	1325 aa		5.2	□□□□□ -1.58
CTSC-208	ENST00000533897	PTPDC1	A2A3K4	754 aa		5.2	□□□□□ -1.58
CTSC-208	ENST00000533897	H2AFX	P16104	143 aa	Predicted RBP	5.2	□□□□□ -1.58
CTSC-208	ENST00000533897	FAM160A1	Q05DH4	1040 aa		5.2	□□□□□ -1.58
CTSC-208	ENST00000533897	ADAL	Q6DHV7	355 aa		5.2	□□□□□ -1.58
CTSC-208	ENST00000533897	ARMCX5	Q6P1M9	558 aa		5.2	□□□□□ -1.58
CTSC-208	ENST00000533897	ELOA2	Q8IYF1	753 aa	Predicted RBP	5.2	□□□□□ -1.58
CTSC-208	ENST00000533897	OSBP2	Q969R2	916 aa		5.2	□□□□□ -1.58
CTSC-208	ENST00000533897	RBM33	Q96EV2	1170 aa	Known RBP	5.2	□□□□□ -1.58
CTSC-208	ENST00000533897	PCDHA7	Q9UN72	937 aa		5.2	□□□□□ -1.58
CTSC-208	ENST00000533897	FOCAD	Q5VW36	1801 aa		5.2	□□□□□ -1.58
CTSC-208	ENST00000533897	TCRBV5S4A2T	A0A5A2	114 aa		5.2	□□□□□ -1.58
CTSC-208	ENST00000533897	CTAGE5	O15320	804 aa		5.2	□□□□□ -1.58
CTSC-208	ENST00000533897	ZNF165	P49910	485 aa		5.2	□□□□□ -1.58
CTSC-208	ENST00000533897	NAA30	Q147X3	362 aa	Predicted RBP	5.2	□□□□□ -1.58
CTSC-208	ENST00000533897	SIL1	Q9H173	461 aa		5.2	□□□□□ -1.58
CTSC-208	ENST00000533897	MYH14	Q7Z406	1995 aa	Known RBP	5.2	□□□□□ -1.58
CTSC-208	ENST00000533897	COL14A1	Q05707	1796 aa	Known RBP	5.19	□□□□□ -1.58
CTSC-208	ENST00000533897	PSME1	Q06323	249 aa		5.19	□□□□□ -1.58
CTSC-208	ENST00000533897	TRIM28	Q13263	835 aa	Known RBP	5.19	□□□□□ -1.58
CTSC-208	ENST00000533897	NTRK3	Q16288	839 aa		5.19	□□□□□ -1.58
CTSC-208	ENST00000533897	TRIM65	Q6PJ69	517 aa		5.19	□□□□□ -1.58
CTSC-208	ENST00000533897	CCAR2	Q8N163	923 aa	Known RBP	5.19	□□□□□ -1.58
CTSC-208	ENST00000533897	FEZ1	Q99689	392 aa		5.19	□□□□□ -1.58
CTSC-208	ENST00000533897	GTPBP4	Q9BZE4	634 aa	Known RBP	5.19	□□□□□ -1.58
CTSC-208	ENST00000533897	FAM217B	Q9NTX9	383 aa	Predicted RBP	5.19	□□□□□ -1.58
CTSC-208	ENST00000533897	INTS13	Q9NVM9	706 aa		5.19	□□□□□ -1.58
CTSC-208	ENST00000533897	PAG1	Q9NWQ8	432 aa		5.19	□□□□□ -1.58
CTSC-208	ENST00000533897	PAXBP1	Q9Y5B6	917 aa		5.19	□□□□□ -1.58
CTSC-208	ENST00000533897	ATAD5	Q96QE3	1844 aa		5.19	□□□□□ -1.58
CTSC-208	ENST00000533897	SLFN14	P0C7P3	912 aa		5.19	□□□□□ -1.58
CTSC-208	ENST00000533897	APOBR	Q0VD83	1088 aa		5.19	□□□□□ -1.58
CTSC-208	ENST00000533897	TBX2	Q13207	712 aa	Predicted RBP	5.19	□□□□□ -1.58
CTSC-208	ENST00000533897	STX1A	Q16623	288 aa		5.19	□□□□□ -1.58
CTSC-208	ENST00000533897	PPP4R3B	Q5MIZ7	849 aa		5.19	□□□□□ -1.58
CTSC-208	ENST00000533897	KRT28	Q7Z3Y7	464 aa		5.19	□□□□□ -1.58
CTSC-208	ENST00000533897	SPC24	Q8NBT2	197 aa		5.19	□□□□□ -1.58
CTSC-208	ENST00000533897	KIF18A	Q8NI77	898 aa		5.19	□□□□□ -1.58
CTSC-208	ENST00000533897	FBXO3	Q9UK99	471 aa		5.19	□□□□□ -1.58
CTSC-208	ENST00000533897	WDHD1	O75717	1129 aa	Predicted RBP	5.19	□□□□□ -1.58
CTSC-208	ENST00000533897	BMP6	P22004	513 aa		5.19	□□□□□ -1.58
CTSC-208	ENST00000533897	NDUFA8	P51970	172 aa		5.19	□□□□□ -1.58
CTSC-208	ENST00000533897	SCARF1	Q14162	830 aa		5.19	□□□□□ -1.58
CTSC-208	ENST00000533897	KMT5B	Q4FZB7	885 aa		5.19	□□□□□ -1.58
CTSC-208	ENST00000533897	LRRC24	Q50LG9	513 aa		5.19	□□□□□ -1.58
CTSC-208	ENST00000533897	NT5DC1	Q5TFE4	455 aa		5.19	□□□□□ -1.58
CTSC-208	ENST00000533897	LRRN4CL	Q8ND94	238 aa		5.19	□□□□□ -1.58
CTSC-208	ENST00000533897	MED15	Q96RN5	788 aa		5.19	□□□□□ -1.58
CTSC-208	ENST00000533897	GPHN	Q9NQX3	736 aa	Predicted RBP	5.19	□□□□□ -1.58
CTSC-208	ENST00000533897	IMPACT	Q9P2X3	320 aa		5.19	□□□□□ -1.58
CTSC-208	ENST00000533897	CFAP45	Q9UL16	551 aa		5.19	□□□□□ -1.58
CTSC-208	ENST00000533897	SPATA31A3	Q5VYP0	1347 aa		5.19	□□□□□ -1.58
CTSC-208	ENST00000533897		A0A087WWV3	80 aa		5.19	□□□□□ -1.58
CTSC-208	ENST00000533897	U2AF2	P26368	475 aa	Known RBP eCLIP	5.19	□□□□□ -1.58
CTSC-208	ENST00000533897	DDX46	Q7L014	1031 aa	Known RBP	5.19	□□□□□ -1.58
CTSC-208	ENST00000533897	UBE3B	Q7Z3V4	1068 aa		5.19	□□□□□ -1.58
CTSC-208	ENST00000533897	CCAR1	Q8IX12	1150 aa	Known RBP	5.19	□□□□□ -1.58
CTSC-208	ENST00000533897	IFNL2	Q8IZJ0	200 aa		5.19	□□□□□ -1.58
CTSC-208	ENST00000533897	SHISA4	Q96DD7	197 aa		5.19	□□□□□ -1.58
CTSC-208	ENST00000533897	CLIC4	Q9Y696	253 aa		5.19	□□□□□ -1.58
CTSC-208	ENST00000533897	RNF113A	O15541	343 aa	Known RBP	5.18	□□□□□ -1.58
CTSC-208	ENST00000533897	NEMF	O60524	1076 aa		5.18	□□□□□ -1.58
CTSC-208	ENST00000533897	YEATS4	O95619	227 aa		5.18	□□□□□ -1.58
CTSC-208	ENST00000533897	STK3	Q13188	491 aa		5.18	□□□□□ -1.58
CTSC-208	ENST00000533897	DPCR1	Q3MIW9	517 aa		5.18	□□□□□ -1.58
CTSC-208	ENST00000533897	APTX	Q7Z2E3	356 aa	Known RBP	5.18	□□□□□ -1.58
CTSC-208	ENST00000533897	SPATA20	Q8TB22	786 aa		5.18	□□□□□ -1.58
CTSC-208	ENST00000533897	TIGD1	Q96MW7	591 aa		5.18	□□□□□ -1.58
CTSC-208	ENST00000533897	CLIP2	Q9UDT6	1046 aa		5.18	□□□□□ -1.58
CTSC-208	ENST00000533897	NHS	Q6T4R5	1651 aa		5.18	□□□□□ -1.58
CTSC-208	ENST00000533897	TAF1	P21675	1872 aa		5.18	□□□□□ -1.58
CTSC-208	ENST00000533897	ZRANB2	O95218	330 aa	Known RBP eCLIP	5.18	□□□□□ -1.58
CTSC-208	ENST00000533897	KIF23	Q02241	960 aa	Predicted RBP	5.18	□□□□□ -1.58
CTSC-208	ENST00000533897	TTLL7	Q6ZT98	887 aa		5.18	□□□□□ -1.58
CTSC-208	ENST00000533897	RIC3	Q7Z5B4	369 aa		5.18	□□□□□ -1.58
CTSC-208	ENST00000533897	FBXO18	Q8NFZ0	1043 aa		5.18	□□□□□ -1.58
CTSC-208	ENST00000533897	FMNL2	Q96PY5	1086 aa		5.18	□□□□□ -1.58
CTSC-208	ENST00000533897	NCOA5	Q9HCD5	579 aa	Known RBP	5.18	□□□□□ -1.58
CTSC-208	ENST00000533897	EYA2	O00167	538 aa		5.18	□□□□□ -1.58
CTSC-208	ENST00000533897	IKBKB	O14920	756 aa		5.18	□□□□□ -1.58
CTSC-208	ENST00000533897	PTMA	P06454	111 aa	Known RBP	5.18	□□□□□ -1.58
CTSC-208	ENST00000533897	MYL6B	P14649	208 aa		5.18	□□□□□ -1.58
CTSC-208	ENST00000533897	IL15	P40933	162 aa	Predicted RBP	5.18	□□□□□ -1.58
CTSC-208	ENST00000533897	OS9	Q13438	667 aa	Predicted RBP	5.18	□□□□□ -1.58
CTSC-208	ENST00000533897	TTLL5	Q6EMB2	1281 aa		5.18	□□□□□ -1.58
CTSC-208	ENST00000533897	LMBR1L	Q6UX01	489 aa		5.18	□□□□□ -1.58
CTSC-208	ENST00000533897	FOXP4	Q8IVH2	680 aa	Predicted RBP	5.18	□□□□□ -1.58
CTSC-208	ENST00000533897	CCDC191	Q8NCU4	936 aa		5.18	□□□□□ -1.58
CTSC-208	ENST00000533897	LRRC2	Q9BYS8	371 aa		5.18	□□□□□ -1.58
CTSC-208	ENST00000533897	EIF4ENIF1	Q9NRA8	985 aa	Known RBP	5.18	□□□□□ -1.58
CTSC-208	ENST00000533897	OGFR	Q9NZT2	677 aa		5.18	□□□□□ -1.58
CTSC-208	ENST00000533897	KIAA1468	Q9P260	1216 aa		5.18	□□□□□ -1.58

Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms