RNA–Protein interactions for RNA: ENST00000529476.1

USF1-209, Transcript of upstream transcription factor 1, humanhuman

TSL 3

Gene USF1, Length 581 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-209ENST00000529476 IQSEC3Q9UPP2 1182 aaPredicted RBP17.23■□□□□ 0.35
USF1-209ENST00000529476 CCDC102BQ68D86 513 aa17.22■□□□□ 0.35
USF1-209ENST00000529476 CIAPIN1Q6FI81 312 aa17.22■□□□□ 0.35
USF1-209ENST00000529476 TDRD7Q8NHU6 1098 aaKnown RBP17.22■□□□□ 0.35
USF1-209ENST00000529476 PRDM10Q9NQV6 1147 aa17.22■□□□□ 0.35
USF1-209ENST00000529476 DBNLQ9UJU6 430 aaKnown RBP17.22■□□□□ 0.35
USF1-209ENST00000529476 PSMD14O00487 310 aa17.21■□□□□ 0.35
USF1-209ENST00000529476 DDNO94850 711 aaPredicted RBP17.21■□□□□ 0.35
USF1-209ENST00000529476 GORABQ5T7V8 394 aa17.21■□□□□ 0.35
USF1-209ENST00000529476 SMC5Q8IY18 1101 aa17.21■□□□□ 0.35
USF1-209ENST00000529476 FBXW7Q969H0 707 aa17.21■□□□□ 0.35
USF1-209ENST00000529476 CREBZFQ9NS37 354 aa17.21■□□□□ 0.35
USF1-209ENST00000529476 GJA3Q9Y6H8 435 aa17.21■□□□□ 0.35
USF1-209ENST00000529476 USP17L3A6NCW0 530 aa17.2■□□□□ 0.34
USF1-209ENST00000529476 USP17L4A6NCW7 530 aa17.2■□□□□ 0.34
USF1-209ENST00000529476 GTF2IP78347 998 aa17.2■□□□□ 0.34
USF1-209ENST00000529476 TNIP1Q15025 636 aa17.2■□□□□ 0.34
USF1-209ENST00000529476 ANKRD45Q5TZF3 282 aa17.2■□□□□ 0.34
USF1-209ENST00000529476 DPY19L2Q6NUT2 758 aa17.2■□□□□ 0.34
USF1-209ENST00000529476 USP17L1Q7RTZ2 530 aa17.2■□□□□ 0.34
USF1-209ENST00000529476 JAG2Q9Y219 1238 aa17.2■□□□□ 0.34
USF1-209ENST00000529476 COL1A1P02452 1464 aaPredicted RBP17.19■□□□□ 0.34
USF1-209ENST00000529476 FRAT2O75474 233 aaPredicted RBP17.19■□□□□ 0.34
USF1-209ENST00000529476 IFIT2P09913 472 aaKnown RBP17.19■□□□□ 0.34
USF1-209ENST00000529476 TTLL5Q6EMB2 1281 aa17.19■□□□□ 0.34
USF1-209ENST00000529476 B4GALNT3Q6L9W6 998 aa17.19■□□□□ 0.34
USF1-209ENST00000529476 GPC2Q8N158 579 aa17.19■□□□□ 0.34
USF1-209ENST00000529476 MXD3Q9BW11 206 aa17.19■□□□□ 0.34
USF1-209ENST00000529476 GNL3LQ9NVN8 582 aaKnown RBP17.19■□□□□ 0.34
USF1-209ENST00000529476 VIL1P09327 827 aaKnown RBP17.18■□□□□ 0.34
USF1-209ENST00000529476 CHAF1AQ13111 956 aaPredicted RBP17.18■□□□□ 0.34
USF1-209ENST00000529476 DACT2Q5SW24 774 aa17.18■□□□□ 0.34
USF1-209ENST00000529476 STRIP1Q5VSL9 837 aa17.18■□□□□ 0.34
USF1-209ENST00000529476 ZBTB12Q9Y330 459 aaPredicted RBP17.18■□□□□ 0.34
USF1-209ENST00000529476 FAM205AQ6ZU69 1335 aa17.18■□□□□ 0.34
USF1-209ENST00000529476 POTEIP0CG38 1075 aa17.17■□□□□ 0.34
USF1-209ENST00000529476 POTEJP0CG39 1038 aa17.17■□□□□ 0.34
USF1-209ENST00000529476 RASGRF1Q13972 1273 aa17.17■□□□□ 0.34
USF1-209ENST00000529476 CCDC158Q5M9N0 1113 aa17.17■□□□□ 0.34
USF1-209ENST00000529476 TTC39AQ5SRH9 613 aa17.17■□□□□ 0.34
USF1-209ENST00000529476 AKAP11Q9UKA4 1901 aa17.17■□□□□ 0.34
USF1-209ENST00000529476 CNTNAP1P78357 1384 aa17.16■□□□□ 0.34
USF1-209ENST00000529476 UQCRFS1P1P0C7P4 283 aa17.16■□□□□ 0.34
USF1-209ENST00000529476 ARID4AP29374 1257 aaPredicted RBP17.16■□□□□ 0.34
USF1-209ENST00000529476 CTCFP49711 727 aaPredicted RBP17.16■□□□□ 0.34
USF1-209ENST00000529476 GMPSP49915 693 aaPredicted RBP17.16■□□□□ 0.34
USF1-209ENST00000529476 SCARF1Q14162 830 aa17.16■□□□□ 0.34
USF1-209ENST00000529476 CHADLQ6NUI6 762 aa17.16■□□□□ 0.34
USF1-209ENST00000529476 RSBN1LQ6PCB5 846 aaPredicted RBP17.16■□□□□ 0.34
USF1-209ENST00000529476 ZBTB47Q9UFB7 747 aaPredicted RBP17.16■□□□□ 0.34
USF1-209ENST00000529476 SEMA3EO15041 775 aa17.15■□□□□ 0.34
USF1-209ENST00000529476 MCAMP43121 646 aa17.15■□□□□ 0.34
USF1-209ENST00000529476 NUCB1Q02818 461 aa17.15■□□□□ 0.34
USF1-209ENST00000529476 ERICH6BQ5W0A0 696 aa17.15■□□□□ 0.34
USF1-209ENST00000529476 PI16Q6UXB8 463 aa17.15■□□□□ 0.34
USF1-209ENST00000529476 CERS5Q8N5B7 392 aa17.15■□□□□ 0.34
USF1-209ENST00000529476 OTUD7AQ8TE49 926 aaPredicted RBP17.15■□□□□ 0.34
USF1-209ENST00000529476 LNPKQ9C0E8 428 aa17.15■□□□□ 0.34
USF1-209ENST00000529476 DENND2AQ9ULE3 1009 aa17.15■□□□□ 0.34
USF1-209ENST00000529476 ZBTB22O15209 634 aa17.14■□□□□ 0.33
USF1-209ENST00000529476 SCNN1DP51172 638 aa17.14■□□□□ 0.33
USF1-209ENST00000529476 LBX1P52954 281 aa17.14■□□□□ 0.33
USF1-209ENST00000529476 MFSD14BQ5SR56 506 aa17.14■□□□□ 0.33
USF1-209ENST00000529476 CHD1LQ86WJ1 897 aa17.14■□□□□ 0.33
USF1-209ENST00000529476 SPATA5Q8NB90 893 aa17.14■□□□□ 0.33
USF1-209ENST00000529476 L3MBTL3Q96JM7 780 aaPredicted RBP17.14■□□□□ 0.33
USF1-209ENST00000529476 CCDC136Q96JN2 1154 aa17.14■□□□□ 0.33
USF1-209ENST00000529476 ZNF512BQ96KM6 892 aaPredicted RBP17.14■□□□□ 0.33
USF1-209ENST00000529476 GMLQ99445 158 aa17.14■□□□□ 0.33
USF1-209ENST00000529476 SNRKQ9NRH2 765 aa17.14■□□□□ 0.33
USF1-209ENST00000529476 HMG20BQ9P0W2 317 aa17.14■□□□□ 0.33
USF1-209ENST00000529476 SCN4AP35499 1836 aa17.13■□□□□ 0.33
USF1-209ENST00000529476 SHTN1A0MZ66 631 aa17.13■□□□□ 0.33
USF1-209ENST00000529476 RPS12P25398 132 aaKnown RBP17.13■□□□□ 0.33
USF1-209ENST00000529476 VEGFBP49765 207 aa17.13■□□□□ 0.33
USF1-209ENST00000529476 FKBP1AP62942 108 aaKnown RBP17.13■□□□□ 0.33
USF1-209ENST00000529476 AGBL3Q8NEM8 1001 aa17.13■□□□□ 0.33
USF1-209ENST00000529476 ABHD8Q96I13 439 aa17.13■□□□□ 0.33
USF1-209ENST00000529476 PCDH10Q9P2E7 1040 aa17.13■□□□□ 0.33
USF1-209ENST00000529476 GRIK5Q16478 980 aa17.12■□□□□ 0.33
USF1-209ENST00000529476 TSHZ3Q63HK5 1081 aa17.12■□□□□ 0.33
USF1-209ENST00000529476 KIAA0825Q8IV33 1275 aa17.12■□□□□ 0.33
USF1-209ENST00000529476 WDR66Q8TBY9 1149 aa17.12■□□□□ 0.33
USF1-209ENST00000529476 DPF2Q92785 391 aa17.12■□□□□ 0.33
USF1-209ENST00000529476 AIDAQ96BJ3 306 aa17.12■□□□□ 0.33
USF1-209ENST00000529476 PPP4R2Q9NY27 417 aa17.12■□□□□ 0.33
USF1-209ENST00000529476 GPRC5DQ9NZD1 345 aa17.12■□□□□ 0.33
USF1-209ENST00000529476 PDS5AQ29RF7 1337 aaKnown RBP17.12■□□□□ 0.33
USF1-209ENST00000529476 MYO3BQ8WXR4 1341 aa17.12■□□□□ 0.33
USF1-209ENST00000529476 F8W031 263 aaPredicted RBP17.11■□□□□ 0.33
USF1-209ENST00000529476 LMOD1P29536 600 aaPredicted RBP17.11■□□□□ 0.33
USF1-209ENST00000529476 EPS15P42566 896 aa17.11■□□□□ 0.33
USF1-209ENST00000529476 CENPQQ7L2Z9 268 aaPredicted RBP17.11■□□□□ 0.33
USF1-209ENST00000529476 MICALL2Q8IY33 904 aa17.11■□□□□ 0.33
USF1-209ENST00000529476 TBC1D22AQ8WUA7 517 aa17.11■□□□□ 0.33
USF1-209ENST00000529476 ECHDC1Q9NTX5 307 aa17.11■□□□□ 0.33
USF1-209ENST00000529476 WBP1LQ9NX94 342 aa17.11■□□□□ 0.33
USF1-209ENST00000529476 CNOT7Q9UIV1 285 aaKnown RBP17.11■□□□□ 0.33
USF1-209ENST00000529476 NDUFB9Q9Y6M9 179 aa17.11■□□□□ 0.33
USF1-209ENST00000529476 PASKQ96RG2 1323 aa17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms