RNA–Protein interactions for RNA: ENST00000528930.5

SSBP3-212, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 1 (best)

Gene SSBP3, Length 862 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-212ENST00000528930 SULF1Q8IWU6 871 aa11.11□□□□□ -0.63
SSBP3-212ENST00000528930 CCDC146Q8IYE0 955 aa11.11□□□□□ -0.63
SSBP3-212ENST00000528930 CD99L2Q8TCZ2 262 aa11.11□□□□□ -0.63
SSBP3-212ENST00000528930 THUMPD2Q9BTF0 503 aaKnown RBP11.11□□□□□ -0.63
SSBP3-212ENST00000528930 HTATIP2Q9BUP3 242 aa11.11□□□□□ -0.63
SSBP3-212ENST00000528930 RTFDC1Q9BY42 306 aaPredicted RBP11.11□□□□□ -0.63
SSBP3-212ENST00000528930 EFCC1Q9HA90 598 aa11.11□□□□□ -0.63
SSBP3-212ENST00000528930 USP16Q9Y5T5 823 aa11.11□□□□□ -0.63
SSBP3-212ENST00000528930 ABCC12Q96J65 1359 aa11.11□□□□□ -0.63
SSBP3-212ENST00000528930 PRUNE2Q8WUY3 3088 aa11.11□□□□□ -0.63
SSBP3-212ENST00000528930 LAMA2P24043 3122 aaKnown RBP11.1□□□□□ -0.63
SSBP3-212ENST00000528930 RIPK4P57078 832 aa11.1□□□□□ -0.63
SSBP3-212ENST00000528930 SLC9C1Q4G0N8 1177 aa11.1□□□□□ -0.63
SSBP3-212ENST00000528930 NBPF11Q86T75 865 aa11.1□□□□□ -0.63
SSBP3-212ENST00000528930 RUNDC1Q96C34 613 aa11.1□□□□□ -0.63
SSBP3-212ENST00000528930 LARP6Q9BRS8 491 aaKnown RBP11.1□□□□□ -0.63
SSBP3-212ENST00000528930 GGA3Q9NZ52 723 aa11.1□□□□□ -0.63
SSBP3-212ENST00000528930 ANKRD36CQ5JPF3 1778 aa11.09□□□□□ -0.63
SSBP3-212ENST00000528930 YDJCA8MPS7 323 aa11.09□□□□□ -0.63
SSBP3-212ENST00000528930 A1BGP04217 495 aa11.09□□□□□ -0.63
SSBP3-212ENST00000528930 BMP8BP34820 402 aa11.09□□□□□ -0.63
SSBP3-212ENST00000528930 KIAA2012Q0VF49 1180 aa11.09□□□□□ -0.63
SSBP3-212ENST00000528930 WDR43Q15061 677 aaKnown RBP eCLIP11.09□□□□□ -0.63
SSBP3-212ENST00000528930 CCDC184Q52MB2 194 aa11.09□□□□□ -0.63
SSBP3-212ENST00000528930 MOB2Q70IA6 237 aa11.09□□□□□ -0.63
SSBP3-212ENST00000528930 SYMPKQ92797 1274 aaKnown RBP11.09□□□□□ -0.63
SSBP3-212ENST00000528930 IRX2Q9BZI1 471 aaPredicted RBP11.09□□□□□ -0.63
SSBP3-212ENST00000528930 NCOR1O75376 2440 aa11.08□□□□□ -0.64
SSBP3-212ENST00000528930 PPEF1O14829 653 aaPredicted RBP11.08□□□□□ -0.64
SSBP3-212ENST00000528930 SNRPA1P09661 255 aaKnown RBP11.08□□□□□ -0.64
SSBP3-212ENST00000528930 DZIP3Q86Y13 1208 aaKnown RBP11.08□□□□□ -0.64
SSBP3-212ENST00000528930 PNISRQ8TF01 805 aaKnown RBP11.08□□□□□ -0.64
SSBP3-212ENST00000528930 GUCD1Q96NT3 240 aa11.08□□□□□ -0.64
SSBP3-212ENST00000528930 STAP2Q9UGK3 403 aa11.08□□□□□ -0.64
SSBP3-212ENST00000528930 RRP7AQ9Y3A4 280 aaKnown RBP11.08□□□□□ -0.64
SSBP3-212ENST00000528930 ZNF330Q9Y3S2 320 aaPredicted RBP11.08□□□□□ -0.64
SSBP3-212ENST00000528930 PTCH2Q9Y6C5 1203 aa11.08□□□□□ -0.64
SSBP3-212ENST00000528930 ASTN2O75129 1339 aaPredicted RBP11.08□□□□□ -0.64
SSBP3-212ENST00000528930 UBE2Q2LH0YL09 131 aa11.07□□□□□ -0.64
SSBP3-212ENST00000528930 TNFRSF10AO00220 468 aa11.07□□□□□ -0.64
SSBP3-212ENST00000528930 EIF4A1P60842 406 aaKnown RBP11.07□□□□□ -0.64
SSBP3-212ENST00000528930 MAP3K9P80192 1104 aa11.07□□□□□ -0.64
SSBP3-212ENST00000528930 MAP3K12Q12852 859 aa11.07□□□□□ -0.64
SSBP3-212ENST00000528930 PROX2Q3B8N5 592 aa11.07□□□□□ -0.64
SSBP3-212ENST00000528930 SUPT20HQ8NEM7 779 aa11.07□□□□□ -0.64
SSBP3-212ENST00000528930 CRAMP1Q96RY5 1269 aa11.07□□□□□ -0.64
SSBP3-212ENST00000528930 GDF15Q99988 308 aa11.07□□□□□ -0.64
SSBP3-212ENST00000528930 ARIH1Q9Y4X5 557 aaPredicted RBP11.07□□□□□ -0.64
SSBP3-212ENST00000528930 COL2A1P02458 1487 aaPredicted RBP11.06□□□□□ -0.64
SSBP3-212ENST00000528930 NBPF26B4DH59 902 aa11.06□□□□□ -0.64
SSBP3-212ENST00000528930 PIP4K2AP48426 406 aaPredicted RBP11.06□□□□□ -0.64
SSBP3-212ENST00000528930 NEUROD2Q15784 382 aa11.06□□□□□ -0.64
SSBP3-212ENST00000528930 KIF4BQ2VIQ3 1234 aa11.06□□□□□ -0.64
SSBP3-212ENST00000528930 NBPF10Q6P3W6 841 aaKnown RBP11.06□□□□□ -0.64
SSBP3-212ENST00000528930 NBPF3Q9H094 633 aa11.06□□□□□ -0.64
SSBP3-212ENST00000528930 RYDENQ9NUL5 291 aaKnown RBP11.06□□□□□ -0.64
SSBP3-212ENST00000528930 TMEM265A0A087WTH1 108 aa11.05□□□□□ -0.64
SSBP3-212ENST00000528930 LMOD3Q0VAK6 560 aa11.05□□□□□ -0.64
SSBP3-212ENST00000528930 BABAM1Q9NWV8 329 aa11.05□□□□□ -0.64
SSBP3-212ENST00000528930 ZNF652Q9Y2D9 606 aa11.05□□□□□ -0.64
SSBP3-212ENST00000528930 IGF2BP3O00425 579 aaKnown RBP eCLIP11.04□□□□□ -0.64
SSBP3-212ENST00000528930 ANP32CO43423 234 aa11.04□□□□□ -0.64
SSBP3-212ENST00000528930 RGS20O76081 388 aa11.04□□□□□ -0.64
SSBP3-212ENST00000528930 RPS12P25398 132 aaKnown RBP11.04□□□□□ -0.64
SSBP3-212ENST00000528930 BCAMP50895 628 aa11.04□□□□□ -0.64
SSBP3-212ENST00000528930 FAM109BQ6ICB4 259 aaPredicted RBP11.04□□□□□ -0.64
SSBP3-212ENST00000528930 RPGRQ92834 1020 aaKnown RBP11.04□□□□□ -0.64
SSBP3-212ENST00000528930 DDX27Q96GQ7 796 aaKnown RBP11.04□□□□□ -0.64
SSBP3-212ENST00000528930 TSPYL4Q9UJ04 414 aa11.04□□□□□ -0.64
SSBP3-212ENST00000528930 NIP7Q9Y221 180 aaKnown RBP eCLIP11.04□□□□□ -0.64
SSBP3-212ENST00000528930 ATP6V0A2Q9Y487 856 aa11.04□□□□□ -0.64
SSBP3-212ENST00000528930 PSMD14O00487 310 aa11.03□□□□□ -0.64
SSBP3-212ENST00000528930 CHL1O00533 1208 aa11.03□□□□□ -0.64
SSBP3-212ENST00000528930 APAF1O14727 1248 aa11.03□□□□□ -0.64
SSBP3-212ENST00000528930 GTPBP6O43824 516 aaPredicted RBP11.03□□□□□ -0.64
SSBP3-212ENST00000528930 INHBEP58166 350 aa11.03□□□□□ -0.64
SSBP3-212ENST00000528930 SP3Q02447 781 aa11.03□□□□□ -0.64
SSBP3-212ENST00000528930 CRHR2Q13324 411 aa11.03□□□□□ -0.64
SSBP3-212ENST00000528930 SPRYD7Q5W111 196 aa11.03□□□□□ -0.64
SSBP3-212ENST00000528930 EMILIN3Q9NT22 766 aa11.03□□□□□ -0.64
SSBP3-212ENST00000528930 PCDHGA10Q9Y5H3 936 aa11.03□□□□□ -0.64
SSBP3-212ENST00000528930 IBTKQ9P2D0 1353 aaPredicted RBP11.03□□□□□ -0.64
SSBP3-212ENST00000528930 MANSC4A6NHS7 340 aaPredicted RBP11.02□□□□□ -0.65
SSBP3-212ENST00000528930 MYCP01106 439 aaPredicted RBP11.02□□□□□ -0.65
SSBP3-212ENST00000528930 RBM26Q5T8P6 1007 aaKnown RBP11.02□□□□□ -0.65
SSBP3-212ENST00000528930 NKX2-3Q8TAU0 364 aa11.02□□□□□ -0.65
SSBP3-212ENST00000528930 SH3TC2Q8TF17 1288 aa11.02□□□□□ -0.65
SSBP3-212ENST00000528930 TCERG1O14776 1098 aaKnown RBP11.01□□□□□ -0.65
SSBP3-212ENST00000528930 GJA8P48165 433 aa11.01□□□□□ -0.65
SSBP3-212ENST00000528930 ANGEL2Q5VTE6 544 aaKnown RBP11.01□□□□□ -0.65
SSBP3-212ENST00000528930 NPM2Q86SE8 214 aaKnown RBP11.01□□□□□ -0.65
SSBP3-212ENST00000528930 RBM17Q96I25 401 aaKnown RBP11.01□□□□□ -0.65
SSBP3-212ENST00000528930 OTOFQ9HC10 1997 aa11.01□□□□□ -0.65
SSBP3-212ENST00000528930 RTL9Q8NET4 1388 aa11.01□□□□□ -0.65
SSBP3-212ENST00000528930 FAM177BA6PVY3 158 aa11□□□□□ -0.65
SSBP3-212ENST00000528930 ZNF853P0CG23 659 aa11□□□□□ -0.65
SSBP3-212ENST00000528930 PTPN12Q05209 780 aaKnown RBP11□□□□□ -0.65
SSBP3-212ENST00000528930 PDIA6Q15084 440 aa11□□□□□ -0.65
SSBP3-212ENST00000528930 TDHQ8IZJ6 230 aa11□□□□□ -0.65
SSBP3-212ENST00000528930 MRS2Q9HD23 443 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 59.6 ms